IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
132	 55.84	0	134751..136052	-	433	62317093	-	BruAb2_0139	-	phthalate transporter
133	 56.40	0	136078..136710	-	210	62317094	-	BruAb2_0140	-	putative aldolase
134	 60.14	0	136736..137701	-	321	62317095	-	BruAb2_0141	-	hypothetical protein
135	 57.45	0	137701..138492	-	263	62317096	-	BruAb2_0142	-	DeoR family transcriptional regulator
136	 55.34	0	138489..139274	-	261	62317097	-	BruAb2_0143	-	hydroxypyruvate isomerase
137	 57.18	0	139274..140548	-	424	62317098	-	BruAb2_0144	-	hypothetical protein
138	 52.90	-1	141610..141747	+	45	62317099	-	BruAb2_0146	-	hypothetical protein
139	 59.58	0	141824..142204	+	126	62317100	flgB	BruAb2_0147	-	flagellar basal body rod protein FlgB
140	 56.97	0	142207..142629	+	140	62317101	flgC	BruAb2_0148	-	flagellar basal body rod protein FlgC
141	 61.31	0	142629..142964	+	111	62317102	fliE	BruAb2_0149	-	flagellar hook-basal body protein FliE
142	 58.94	0	143050..143838	+	262	62317103	flgG	BruAb2_0150	-	flagellar basal body rod protein FlgG
143	 59.83	0	143850..144332	+	160	62317104	flgA	BruAb2_0151	-	flagellar basal body P-ring biosynthesis protein FlgA
144	 58.29	0	145699..146259	+	186	62317105	-	BruAb2_0153	-	hypothetical protein
145	 60.11	0	146268..146984	+	238	62317106	flgH	BruAb2_0154	-	flagellar basal body L-ring protein
146	 60.57	0	146997..147488	+	163	62317107	-	BruAb2_0155	-	flagellar protein FliL
147	 57.89	0	147485..148225	+	246	62317108	fliP	BruAb2_0156	-	flagellar biosynthesis protein FliP
148	 50.30	-1	148320..148814	+	164	62317109	-	BruAb2_0157	-	hypothetical protein
149	 52.76	-1	148827..149243	+	138	62317110	-	BruAb2_0158	-	hypothetical protein
150	 57.40	0	149439..150323	-	294	62317111	-	BruAb2_0159	-	LysR family transcriptional regulator
151	 43.94	-2	150375..150506	+	43	62317112	-	BruAb2_0160	-	hypothetical protein
152	 58.29	0	150503..151720	+	405	62317113	-	BruAb2_0161	-	CAIB/BAIF family protein
153	 58.54	0	151788..152624	+	278	62317114	-	BruAb2_0162	-	hypothetical protein
154	 59.39	0	152618..153442	+	274	62317115	-	BruAb2_0163	-	citrate lyase subunit beta
155	 39.05	-2	153637..153741	-	34	62317116	-	BruAb2_0164	-	hypothetical protein
156	 50.78	-1	153892..154470	+	192	62317117	-	BruAb2_0165	-	cytochrome b561
157	 44.89	-2	154969..155193	+	74	62317118	-	BruAb2_0166	-	hypothetical protein
158	 58.02	0	155260..155664	+	134	62317119	-	BruAb2_0167	-	hypothetical protein
159	 59.34	0	155799..161750	+	1983	62317120	-	BruAb2_0168	-	outermembrane transporter
160	 50.51	-1	162525..162920	+	131	62317121	cycA	BruAb2_0169	-	CycA, cytochrome c2
161	 57.08	0	163144..163383	-	79	62317122	-	BruAb2_0170	-	hypothetical protein
162	 53.62	0	163813..163950	+	45	62317123	-	BruAb2_0171	-	hypothetical protein
163	 60.15	0	164028..164840	-	270	62317124	-	BruAb2_0172	-	GntR family transcriptional regulator
164	 61.35	0	164962..165882	-	306	62317125	-	BruAb2_0173	-	LysR family transcriptional regulator
165	 50.83	-1	166042..166161	-	39	62317126	-	BruAb2_0174	-	hypothetical protein
166	 59.72	0	166233..167729	+	498	62317127	glcD	BruAb2_0175	-	GlcD, glycolate oxidase, subunit GlcD
167	 62.69	+1	167745..168977	+	410	62317128	glcE	BruAb2_0176	-	glycolate oxidase, subunit GlcE
168	 59.52	0	168982..170283	+	433	62317129	glcF	BruAb2_0177	-	glycolate oxidase, iron-sulfur subunit
169	 55.31	0	170506..171333	-	275	62317130	-	BruAb2_0178	-	aldo/keto reductase family oxidoreductase
170	 60.09	0	171659..172342	-	227	62317131	-	BruAb2_0179	-	hypothetical protein
171	 55.10	0	172582..173238	+	218	62317132	tag	BruAb2_0180	-	DNA-3-methyladenine glycosidase I
172	 59.71	0	173357..173974	+	205	62317133	-	BruAb2_0181	-	amino acid transporter LysE
173	 60.50	0	174085..175593	+	502	62317134	hisS	BruAb2_0182	-	histidyl-tRNA synthetase
174	 60.33	0	175596..176732	+	378	62317135	hisZ	BruAb2_0183	-	ATP phosphoribosyltransferase regulatory subunit
175	 60.34	0	176729..177424	+	231	62317136	hisG	BruAb2_0184	-	ATP phosphoribosyltransferase catalytic subunit
176	 58.11	0	177497..178735	-	412	62317137	-	BruAb2_0185	-	glucose/galactose transporter
177	 55.97	0	179021..179422	-	133	62317138	-	BruAb2_0186	-	hypothetical protein
178	 59.70	0	179525..180916	-	463	62317139	fumC	BruAb2_0187	-	fumarate hydratase
179	 56.86	0	181066..181320	-	84	62317140	-	BruAb2_0188	-	hypothetical protein
180	 54.05	0	181650..181871	-	73	62317141	-	BruAb2_0189	-	hypothetical protein
181	 58.93	0	182073..183713	-	546	62317142	groEL	BruAb2_0190	-	chaperonin GroEL
182	 59.60	0	183804..184100	-	98	62317143	groES	BruAb2_0191	-	co-chaperonin GroES
183	 54.61	0	184220..184360	+	46	62317144	-	BruAb2_0192	-	hypothetical protein
184	 53.33	0	184413..184517	-	34	62317145	-	BruAb2_0193	-	hypothetical protein
185	 59.13	0	184581..185429	+	282	62317146	-	BruAb2_0194	-	HAD superfamily hydrolase
186	 53.51	0	185465..185578	+	37	62317147	-	BruAb2_0195	-	hypothetical protein
187	 59.60	0	185559..186506	+	315	62317148	ribF	BruAb2_0196	-	bifunctional riboflavin kinase/FMN adenylyltransferase
188	 58.27	0	186850..189768	+	972	62317149	ileS	BruAb2_0197	-	isoleucyl-tRNA synthetase
189	 62.35	+1	189960..190631	+	223	62317150	-	BruAb2_0198	-	hypothetical protein
190	 54.90	0	190976..191536	+	186	62317151	-	BruAb2_0199	-	cytochrome b561
191	 59.92	0	191590..192063	-	157	62317152	-	BruAb2_0200	-	cytidine and deoxycytidylate deaminase family protein
192	 64.32	+1	192204..193949	+	581	62317153	-	BruAb2_0201	-	RNA pseudouridylate synthase family protein
193	 59.40	0	193930..194493	+	187	62317154	-	BruAb2_0202	-	hypothetical protein
194	 57.71	0	194672..196123	+	483	62317155	-	BruAb2_0203	-	protease
195	 57.48	0	197497..198378	+	293	62317156	-	BruAb2_0205	-	hypothetical protein
196	 59.84	0	198391..200235	-	614	62317157	-	BruAb2_0206	-	lutathione-regulated potassium-efflux system protein
197	 61.90	+1	200437..201780	+	447	62317158	pmbA	BruAb2_0207	-	hypothetical protein
198	 59.88	0	201767..202576	+	269	62317159	-	BruAb2_0208	-	inositol monophosphatase family protein
199	 53.57	0	202615..202866	+	83	62317160	-	BruAb2_0209	-	hypothetical protein
200	 58.74	0	202930..203673	+	247	62317161	-	BruAb2_0210	-	hypothetical protein
201	 61.07	0	203670..205010	+	446	62317162	kdtA	BruAb2_0211	-	3-deoxy-D-manno-octulosonic-acid transferase
202	 62.18	+1	205013..206038	+	341	62317163	lpxK	BruAb2_0212	-	tetraacyldisaccharide 4'-kinase
203	 59.07	0	206052..206288	-	78	62317164	-	BruAb2_0213	-	hypothetical protein
204	 62.45	+1	206386..208257	-	623	62317165	mutL	BruAb2_0214	-	DNA mismatch repair protein
205	 58.26	0	208441..209724	-	427	62317166	mucK	BruAb2_0215	-	MucK, cis,cis-muconate transport protein
206	 58.10	0	209822..210976	-	384	62317167	-	BruAb2_0216	-	acyl-CoA dehydrogenase
207	 59.18	0	211033..211887	-	284	62317168	-	BruAb2_0217	-	IclR family transcriptional regulator
208	 59.12	0	214653..215792	+	379	62317169	-	BruAb2_0220	-	CAIB/BAIF family protein
209	 63.06	+1	215879..217153	-	424	62317170	-	BruAb2_0221	-	FMN-binding oxidoreductase
210	 56.99	0	217239..217703	+	154	62317171	-	BruAb2_0222	-	MerR family transcriptional regulator
211	 61.30	0	217801..219141	-	446	62317172	-	BruAb2_0223	-	sensor histidine kinase
212	 57.67	0	219141..219818	-	225	62317173	-	BruAb2_0224	-	two component response regulator
213	 52.12	-1	219946..220110	-	54	62317174	-	BruAb2_0225	-	hypothetical protein
214	 57.14	0	220082..220354	+	90	62317175	-	BruAb2_0226	-	hypothetical protein
215	 59.45	0	220522..220992	+	156	62317176	-	BruAb2_0227	-	hypothetical protein
216	 61.35	0	223189..224166	+	325	62317177	-	BruAb2_0229	-	ApbE family protein
217	 56.60	0	226529..227134	+	201	62317178	-	BruAb2_0232	-	glutathione S-transferase
218	 52.97	0	227317..227703	+	128	62317179	-	BruAb2_0233	-	extradiol ring-cleaving dioxygenase
219	 57.35	0	227856..228263	+	135	62317180	-	BruAb2_0234	-	hypothetical protein
220	 56.62	0	228360..230390	+	676	62317181	-	BruAb2_0235	-	TonB-dependent receptor protein
221	 55.33	0	230558..231739	+	393	62317182	-	BruAb2_0236	-	hypothetical protein
222	 55.22	0	231833..232627	-	264	62317183	-	BruAb2_0237	-	IclR family transcriptional regulator
223	 58.84	0	234004..235536	+	510	62317184	rbsA-4	BruAb2_0239	-	RbsA-4, ribose ABC transporter, ATP-binding protein
224	 57.08	0	235536..236495	+	319	62317185	rbsC-5	BruAb2_0240	-	ribose ABC transporter, permease protein
225	 61.43	+1	236492..237445	+	317	62317186	rbsC-4	BruAb2_0241	-	RbsC-4, ribose ABC transporter, permease protein
226	 53.10	0	237445..237864	+	139	62317187	-	BruAb2_0242	-	hypothetical protein
227	 58.07	0	238072..238734	-	220	62317188	-	BruAb2_0243	-	putative sulfite oxidase subunit YedZ
228	 57.19	0	238736..239695	-	319	62317189	-	BruAb2_0244	-	putative sulfite oxidase subunit YedY
229	 56.86	0	240118..240984	+	288	62317190	-	BruAb2_0245	-	hypothetical protein
230	 61.33	0	241101..242075	-	324	62317191	-	BruAb2_0246	-	WD repeat-containing protein
231	 59.04	0	242194..243333	-	379	62317192	-	BruAb2_0247	-	cobalamin synthesis protein/P47K family protein
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.