IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
54	 53.21	0	52911..54314	-	467	62317015	-	BruAb2_0056	-	amino acid permease family protein
55	 58.77	0	54532..55683	-	383	62317016	-	BruAb2_0057	-	hypothetical protein
56	 57.42	0	55934..56452	-	172	62317017	-	BruAb2_0058	-	lipoprotein
57	 58.40	0	56598..57686	-	362	62317018	-	BruAb2_0059	-	type IV secretion system protein VirB11
58	 58.53	0	57667..58833	-	388	62317019	-	BruAb2_0060	-	type IV secretion system protein VirB10
59	 57.59	0	58830..59699	-	289	62317020	-	BruAb2_0061	-	type IV secretion system protein VirB9
60	 55.69	0	59696..60415	-	239	62317021	-	BruAb2_0062	-	type IV secretion system protein VirB8
61	 58.05	0	60418..60591	-	57	62317022	-	BruAb2_0063	-	type IV secretion system protein VirB7
62	 55.56	0	60755..61798	-	347	62317023	-	BruAb2_0064	-	type IV secretion system protein VirB6
63	 56.07	0	61982..62698	-	238	62317024	-	BruAb2_0065	-	type IV secretion system protein VirB5
64	 55.57	0	62703..65198	-	831	62317025	-	BruAb2_0066	-	type IV secretion system protein VirB4
65	 55.27	0	65198..65548	-	116	62317026	-	BruAb2_0067	-	type IV secretion system protein VirB3
66	 56.29	0	65562..65879	-	105	62317027	-	BruAb2_0068	-	type IV secretion system protein VirB2
67	 56.49	0	66315..67031	-	238	62317028	-	BruAb2_0069	-	type IV secretion system protein VirB1
68	 59.32	0	67535..68773	-	412	62317029	-	BruAb2_0070	-	transglycosylase
69	 56.94	0	69173..70066	+	297	62317030	galU	BruAb2_0071	-	GalU, UTP--glucose-1-phosphate uridylyltransferase
70	 60.23	0	70119..71657	-	512	62317031	-	BruAb2_0072	-	hypothetical protein
71	 59.68	0	71798..72799	+	333	62317032	-	BruAb2_0073	-	sugar isomerase, KpsF/GutQ
72	 57.48	0	72906..73373	-	155	62317033	-	BruAb2_0074	-	hypothetical protein
73	 58.97	0	73394..74380	-	328	62317034	-	BruAb2_0075	-	SPFH domain-containing protein/band 7 family protein
74	 58.07	0	74513..75571	-	352	62317035	hemH	BruAb2_0076	-	ferrochelatase
75	 60.37	0	75709..76089	-	126	62317036	omp10	BruAb2_0077	-	lipoprotein Omp10
76	 58.23	0	76231..77676	-	481	62317037	-	BruAb2_0078	-	homospermidine synthase
77	 59.47	0	77788..78468	-	226	62317038	-	BruAb2_0079	-	hypothetical protein
78	 59.23	0	78402..79571	-	389	62317039	-	BruAb2_0080	-	para-aminobenzoate synthase component I
79	 56.90	0	79581..81443	-	620	62317040	pepF	BruAb2_0081	-	PepF, oligoendopeptidase F
80	 59.56	0	81791..83281	+	496	62317041	-	BruAb2_0082	-	sigma-54 dependent DNA-binding response regulator
81	 64.05	+1	83622..85535	+	637	62317042	-	BruAb2_0083	-	hypothetical protein
82	 61.50	+1	85601..86239	-	212	62317043	-	BruAb2_0084	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
83	 60.38	0	86398..86922	-	174	62317044	-	BruAb2_0085	-	hypothetical protein
84	 57.41	0	87140..88057	+	305	62317045	-	BruAb2_0086	-	rhodanese family protein
85	 55.07	0	88092..88298	+	68	62317046	-	BruAb2_0087	-	hypothetical protein
86	 56.48	0	88338..89093	+	251	62317047	modA	BruAb2_0088	-	ModeA, molybdenum ABC transporter, periplasmic molybdenum-binding protein
87	 59.97	0	89104..89790	+	228	62317048	modB	BruAb2_0089	-	molybdate ABC transporter permease protein
88	 61.48	+1	89787..90866	+	359	62317049	modC	BruAb2_0090	-	ModC, molybdenum ABC transporter, ATP-binding protein
89	 56.05	0	90936..91613	+	225	62317050	-	BruAb2_0091	-	acetyltransferase
90	 55.24	0	91600..91809	+	69	62317051	-	BruAb2_0092	-	hypothetical protein
91	 46.15	-2	91901..92056	+	51	62317052	-	BruAb2_0093	-	hypothetical protein
92	 33.73	-2	92106..92609	-	167	62317053	-	BruAb2_0094	-	hypothetical protein
93	 59.51	0	92751..93854	-	367	62317054	-	BruAb2_0095	-	hypothetical protein
94	 54.33	0	93854..94558	-	234	62317055	-	BruAb2_0096	-	hypothetical protein
95	 59.73	0	94598..95491	-	297	62317056	-	BruAb2_0097	-	LysR family transcriptional regulator
96	 60.53	0	95495..96700	-	401	62317057	-	BruAb2_0098	-	amidase
97	 60.23	0	97285..98418	+	377	62317058	-	BruAb2_0099	-	ornithine/DAP/arginine decarboxylase family decarboxylase 2
98	 59.74	0	98494..100212	-	572	62317059	-	BruAb2_0100	-	polysaccharide accessory transport protein
99	 38.41	-2	100229..100366	-	45	62317060	-	BruAb2_0101	-	hypothetical protein
100	 55.21	0	100338..101201	-	287	62317061	-	BruAb2_0102	-	hypothetical protein
101	 56.42	0	101959..103149	-	396	62317062	-	BruAb2_0104	-	hypothetical protein
102	 54.08	0	103285..104277	+	330	62317063	-	BruAb2_0105	-	glycosyl transferase, group 2 family protein
103	 56.33	0	104285..105571	+	428	62317064	-	BruAb2_0106	-	exopolysaccharide production protein
104	 56.82	0	105585..106721	+	378	62317065	-	BruAb2_0107	-	Gfo/Idh/MocA family oxidoreductase
105	 58.10	0	106718..107767	-	349	62317066	-	BruAb2_0108	-	Gfo/Idh/MocA family oxidoreductase
106	 60.00	0	108084..109493	+	469	62317067	gnd	BruAb2_0109	-	6-phosphogluconate dehydrogenase
107	 59.04	0	109589..110650	-	353	62317068	-	BruAb2_0110	-	spermidine/putrescine ABC transporter, ATP-binding protein
108	 55.31	0	110656..111474	-	272	62317069	-	BruAb2_0111	-	spermidine/putrescine ABC transporter permease
109	 57.05	0	111471..112364	-	297	62317070	-	BruAb2_0112	-	spermidine/putrescine ABC transporter permease
110	 59.06	0	112573..113676	-	367	62317071	-	BruAb2_0113	-	ABC transporter, periplasmic substrate-binding protein
111	 57.80	0	116766..117509	+	247	62317072	-	BruAb2_0116	-	TetR family transcriptional regulator
112	 53.33	0	117783..118562	+	259	62317073	-	BruAb2_0117	-	LuxR family transcriptional regulator
113	 54.41	0	118528..119049	-	173	62317074	-	BruAb2_0118	-	hypothetical protein
114	 60.04	0	119169..120239	-	356	62317075	flhB	BruAb2_0119	-	flagellar biosynthesis protein FlhB
115	 57.94	0	121245..121565	-	106	62317076	-	BruAb2_0121	-	flagellar motor switch protein FliN
116	 64.29	+1	121589..122050	-	153	62317077	-	BruAb2_0122	-	hypothetical protein
117	 58.08	0	122982..123854	-	290	62317078	motA	BruAb2_0124	-	flagellar motor protein MotA
118	 54.25	0	124000..124788	+	262	62317079	-	BruAb2_0125	-	hypothetical protein
119	 59.43	0	124788..125519	+	243	62317080	flgF	BruAb2_0126	-	flagellar basal body rod protein FlgF
120	 61.23	0	125516..126877	+	453	62317081	fliI	BruAb2_0127	-	flagellum-specific ATP synthase
121	 61.46	+1	126961..127479	+	172	62317082	-	BruAb2_0128	-	hypothetical protein
122	 52.45	-1	127504..128481	-	325	62317083	-	BruAb2_0129	-	PAP2 family protein
123	 48.08	-2	128469..128624	+	51	62317084	-	BruAb2_0130	-	hypothetical protein
124	 45.66	-2	128779..128997	-	72	62317085	-	BruAb2_0131	-	hypothetical protein
125	 47.73	-2	129025..129420	+	131	62317086	-	BruAb2_0132	-	hypothetical protein
126	 55.45	0	129417..130397	+	326	62317087	-	BruAb2_0133	-	glycosyl transferase, group 2 family protein
127	 59.73	0	130381..131130	+	249	62317088	-	BruAb2_0134	-	hypothetical protein
128	 59.43	0	131127..132563	+	478	62317089	-	BruAb2_0135	-	dolichyl-phosphate-mannose-protein mannosyltransferase family protein
129	 51.21	-1	132735..133763	+	342	62317090	-	BruAb2_0136	-	AraC family transcriptional regulator
130	 48.57	-2	134026..134130	+	34	62317091	-	BruAb2_0137	-	hypothetical protein
131	 46.58	-2	134120..134557	+	145	62317092	-	BruAb2_0138	-	SyrB family protein
132	 55.84	0	134751..136052	-	433	62317093	-	BruAb2_0139	-	phthalate transporter
133	 56.40	0	136078..136710	-	210	62317094	-	BruAb2_0140	-	putative aldolase
134	 60.14	0	136736..137701	-	321	62317095	-	BruAb2_0141	-	hypothetical protein
135	 57.45	0	137701..138492	-	263	62317096	-	BruAb2_0142	-	DeoR family transcriptional regulator
136	 55.34	0	138489..139274	-	261	62317097	-	BruAb2_0143	-	hydroxypyruvate isomerase
137	 57.18	0	139274..140548	-	424	62317098	-	BruAb2_0144	-	hypothetical protein
138	 52.90	-1	141610..141747	+	45	62317099	-	BruAb2_0146	-	hypothetical protein
139	 59.58	0	141824..142204	+	126	62317100	flgB	BruAb2_0147	-	flagellar basal body rod protein FlgB
140	 56.97	0	142207..142629	+	140	62317101	flgC	BruAb2_0148	-	flagellar basal body rod protein FlgC
141	 61.31	0	142629..142964	+	111	62317102	fliE	BruAb2_0149	-	flagellar hook-basal body protein FliE
142	 58.94	0	143050..143838	+	262	62317103	flgG	BruAb2_0150	-	flagellar basal body rod protein FlgG
143	 59.83	0	143850..144332	+	160	62317104	flgA	BruAb2_0151	-	flagellar basal body P-ring biosynthesis protein FlgA
144	 58.29	0	145699..146259	+	186	62317105	-	BruAb2_0153	-	hypothetical protein
145	 60.11	0	146268..146984	+	238	62317106	flgH	BruAb2_0154	-	flagellar basal body L-ring protein
146	 60.57	0	146997..147488	+	163	62317107	-	BruAb2_0155	-	flagellar protein FliL
147	 57.89	0	147485..148225	+	246	62317108	fliP	BruAb2_0156	-	flagellar biosynthesis protein FliP
148	 50.30	-1	148320..148814	+	164	62317109	-	BruAb2_0157	-	hypothetical protein
149	 52.76	-1	148827..149243	+	138	62317110	-	BruAb2_0158	-	hypothetical protein
150	 57.40	0	149439..150323	-	294	62317111	-	BruAb2_0159	-	LysR family transcriptional regulator
151	 43.94	-2	150375..150506	+	43	62317112	-	BruAb2_0160	-	hypothetical protein
152	 58.29	0	150503..151720	+	405	62317113	-	BruAb2_0161	-	CAIB/BAIF family protein
153	 58.54	0	151788..152624	+	278	62317114	-	BruAb2_0162	-	hypothetical protein
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.