IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.12   STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
926	 59.74	0	976021..977103	+	360	62289917	-	BruAb1_0999	-	DNA polymerase III subunit delta'
927	 56.00	0	977123..977272	+	49	62289918	-	BruAb1_1000	-	hypothetical protein
928	 57.82	0	977272..978819	+	515	62289919	metG	BruAb1_1001	-	methionyl-tRNA synthetase
929	 55.81	0	978828..979619	+	263	62289920	-	BruAb1_1002	-	TatD family hydrolase
930	 56.53	0	979622..980440	+	272	62289921	-	BruAb1_1003	-	hypothetical protein
931	 59.61	0	980490..982289	-	599	62289922	-	BruAb1_1004	-	cyclic beta-1,2-glucan ABC transporter
932	 59.33	0	982602..983582	+	326	62289923	-	BruAb1_1005	-	ribosomal large subunit pseudouridine synthase C
933	 54.11	0	983585..984508	+	307	62289924	-	BruAb1_1006	-	hypothetical protein
934	 57.51	0	984505..985170	+	221	62289925	-	BruAb1_1007	-	HAD superfamily hydrolase
935	 58.49	0	985212..985994	+	260	62289926	-	BruAb1_1008	-	hypothetical protein
936	 55.46	0	986120..987529	-	469	62289927	glnA	BruAb1_1009	-	GlnA, glutamine synthetase, type I
937	 53.69	0	987677..988015	-	112	62289928	glnB	BruAb1_1010	-	GlnB, nitrogen regulatory protein P-II
938	 60.49	0	988322..989827	+	501	62289929	-	BruAb1_1011	-	YjeF family protein
939	 54.58	0	989858..990130	-	90	62289930	-	BruAb1_1012	-	hypothetical protein
940	 57.45	0	990127..990831	-	234	62289931	cbbZ	BruAb1_1013	-	phosphoglycolate phosphatase
941	 51.75	-1	990886..990999	+	37	62289932	-	BruAb1_1014	-	hypothetical protein
942	 57.37	0	991178..991876	+	232	62289933	rpiA	BruAb1_1015	-	ribose-5-phosphate isomerase A
943	 59.59	0	991902..992438	+	178	62289934	-	BruAb1_1016	-	hypothetical protein
944	 55.70	0	992592..993986	+	464	62289935	gor	BruAb1_1017	-	glutathione reductase
945	 58.99	0	994195..995574	+	459	62289936	dhs	BruAb1_1018	-	Dhs, phospho-2-dehydro-3-deoxyheptonate aldolase, class II
946	 53.85	0	995688..996038	+	116	62289937	dgkA	BruAb1_1019	-	DgkA, diacylglycerol kinase
947	 56.93	0	996130..997782	+	550	62289938	nadE	BruAb1_1020	-	NAD synthetase
948	 57.28	0	997794..999167	+	457	62289939	gltX	BruAb1_1021	-	glutamyl-tRNA synthetase
949	 59.66	0	999981..1002305	-	774	62289940	maeB	BruAb1_1022	-	malic enzyme
950	 57.70	0	1002523..1003503	-	326	62289941	-	BruAb1_1023	-	mandelate racemase/muconate lactonizing enzyme family protein
951	 55.87	0	1003564..1004739	+	391	62289942	-	BruAb1_1024	-	toulene ABC transporter permease
952	 56.41	0	1004956..1005813	+	285	62289943	-	BruAb1_1025	-	ABC transporter, ATP-binding protein
953	 55.52	0	1005817..1006812	+	331	62289944	-	BruAb1_1026	-	ABC transporter, periplasmic substrate-binding protein
954	 55.56	0	1006836..1007438	+	200	62289945	-	BruAb1_1027	-	lipoprotein
955	 50.93	-1	1007500..1007607	-	35	62289946	-	BruAb1_1028	-	hypothetical protein
956	 59.65	0	1007678..1012339	-	1553	62289947	-	BruAb1_1029	-	hypothetical protein
957	 48.05	-2	1012554..1012784	+	76	62289948	-	BruAb1_1030	-	hypothetical protein
958	 60.80	0	1012955..1013278	+	107	62289949	-	BruAb1_1031	-	ferredoxin, 2Fe-2S
959	 56.52	0	1013924..1014544	-	206	62289950	-	BruAb1_1033	-	hypothetical protein
960	 57.98	0	1014702..1015541	+	279	62289951	folP	BruAb1_1034	-	FolP, dihydropteroate synthase
961	 52.78	-1	1015560..1015919	+	119	62289952	folB	BruAb1_1035	-	FolB, dihydroneopterin aldolase
962	 59.55	0	1015916..1016449	+	177	62289953	folK	BruAb1_1036	-	FolK, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
963	 56.81	0	1016564..1017121	-	185	62289954	-	BruAb1_1037	-	hypothetical protein
964	 59.50	0	1017373..1018446	-	357	62289955	-	BruAb1_1038	-	hypothetical protein
965	 58.59	0	1018443..1019903	-	486	62289956	-	BruAb1_1039	-	hypothetical protein
966	 54.09	0	1019996..1020496	-	166	62289957	-	BruAb1_1040	-	hypothetical protein
967	 52.04	-1	1020892..1021308	+	138	62289958	dksA	BruAb1_1041	-	DksA, dnaK suppressor protein
968	 44.79	-2	1021318..1021413	+	31	62289959	-	BruAb1_1042	-	hypothetical protein
969	 60.30	0	1021454..1022710	-	418	62289960	-	BruAb1_1043	-	hypothetical protein
970	 58.53	0	1022936..1025773	+	945	62289961	-	BruAb1_1044	-	sensory box histidine kinase/response regulator
971	 57.57	0	1025798..1027006	+	402	62289962	-	BruAb1_1045	-	hypothetical protein
972	 55.56	0	1027037..1028359	+	440	62289963	-	BruAb1_1046	-	hypothetical protein
973	 51.18	-1	1028340..1029566	-	408	62289964	-	BruAb1_1047	-	hypothetical protein
974	 57.49	0	1029656..1033438	-	1260	62289965	-	BruAb1_1048	-	ribonucleotide-diphosphate reductase subunit alpha
975	 47.50	-2	1033491..1033730	+	79	62289966	-	BruAb1_1049	-	hypothetical protein
976	 59.51	0	1034140..1034628	-	162	62289967	-	BruAb1_1050	-	MutT/nudix family protein
977	 59.34	0	1035817..1036662	-	281	62289968	-	BruAb1_1052	-	hypothetical protein
978	 57.44	0	1036740..1037498	-	252	62289969	-	BruAb1_1053	-	cinA-related protein
979	 59.00	0	1037659..1038258	+	199	62289970	wrbA	BruAb1_1054	-	TrpR binding protein WrbA
980	 50.67	-1	1038236..1038385	-	49	62289971	-	BruAb1_1055	-	hypothetical protein
981	 53.89	0	1038560..1039819	+	419	62289972	-	BruAb1_1056	-	threonine dehydratase
982	 61.97	+1	1039886..1041481	+	531	62289973	-	BruAb1_1057	-	DEAD-box ATP dependent DNA helicase
983	 58.11	0	1041652..1042680	+	342	62289974	-	BruAb1_1058	-	cysteine synthase A
984	 55.91	0	1042683..1043426	+	247	62289975	-	BruAb1_1059	-	hypothetical protein
985	 58.25	0	1043453..1044307	+	284	62289976	-	BruAb1_1060	-	rhodanese family protein
986	 55.17	0	1044309..1044830	+	173	62289977	-	BruAb1_1061	-	acetyltransferase
987	 55.33	0	1045017..1046507	-	496	62289978	-	BruAb1_1062	-	acetyl-CoA hydrolase/transferase family protein
988	 55.96	0	1051656..1052486	-	276	62289979	-	BruAb1_1068	-	hypothetical protein
989	 55.28	0	1052595..1053560	-	321	62289980	-	BruAb1_1069	-	sodium/bile acid symporter family protein
990	 51.11	-1	1053588..1053722	-	44	62289981	-	BruAb1_1070	-	hypothetical protein
991	 53.97	0	1053689..1054696	-	335	62289982	galE-1	BruAb1_1071	-	GalE-1, UDP-glucose 4-epimerase
992	 53.45	0	1054841..1055665	+	274	62289983	mazG	BruAb1_1072	-	nucleoside triphosphate pyrophosphohydrolase
993	 56.37	0	1055674..1056285	-	203	62289984	-	BruAb1_1073	-	hypothetical protein
994	 58.12	0	1056328..1056912	-	194	62289985	-	BruAb1_1074	-	nitroreductase family protein
995	 58.11	0	1057150..1058142	+	330	62289986	-	BruAb1_1075	-	hypothetical protein
996	 56.45	0	1058197..1060173	-	658	62289987	thrS	BruAb1_1076	-	threonyl-tRNA synthetase
997	 58.23	0	1060388..1061620	-	410	62289988	-	BruAb1_1077	-	D-alanyl-D-alanine carboxypeptidase
998	 59.68	0	1061727..1062098	-	123	62289989	-	BruAb1_1078	-	hypothetical protein
999	 57.37	0	1062100..1062540	-	146	62289990	-	BruAb1_1079	-	NifU-related protein
1000	 57.01	0	1062804..1063445	+	213	62289991	folE	BruAb1_1080	-	GTP cyclohydrolase I
1001	 57.38	0	1063468..1063887	+	139	62289992	hisI	BruAb1_1081	-	phosphoribosyl-AMP cyclohydrolase
1002	 59.39	0	1064104..1065051	+	315	62289993	-	BruAb1_1082	-	hypothetical protein
1003	 53.82	0	1065524..1066768	+	414	62289994	-	BruAb1_1083	-	phage integrase family site specific recombinase
1004	 53.58	0	1066907..1067311	+	134	62289995	-	BruAb1_1084	-	hypothetical protein
1005	 37.00	-2	1067369..1067641	+	90	62289996	-	BruAb1_1085	-	hypothetical protein
1006	 58.25	0	1070656..1071273	-	205	62289997	-	BruAb1_1087	-	resolvase family site-specific recombinase
1007	 54.86	0	1071663..1072043	-	126	62289998	-	BruAb1_1088	-	hypothetical protein
1008	 54.68	0	1072400..1072933	-	177	62289999	-	BruAb1_1089	-	hypothetical BRO family protein
1009	 56.79	0	1074725..1075909	-	394	62290000	-	BruAb1_1091	-	glutaryl-CoA dehydrogenase
1010	 59.15	0	1076011..1076862	+	283	62290001	-	BruAb1_1092	-	LysR family transcriptional regulator
1011	 59.55	0	1076912..1077895	-	327	62290002	-	BruAb1_1093	-	luciferase family protein
1012	 57.38	0	1077976..1081065	-	1029	62290003	-	BruAb1_1094	-	AcrB/AcrD/AcrF multidrug efflux protein
1013	 57.44	0	1081075..1082223	-	382	62290004	-	BruAb1_1095	-	hypothetical protein
1014	 54.14	0	1082364..1082930	+	188	62290005	-	BruAb1_1096	-	TetR family transcriptional regulator
1015	 58.99	0	1082967..1084100	-	377	62290006	tgt	BruAb1_1097	-	queuine tRNA-ribosyltransferase
1016	 58.42	0	1084097..1085188	-	363	62290007	queA	BruAb1_1098	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1017	 59.57	0	1085310..1085816	-	168	62290008	-	BruAb1_1099	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1018	 55.84	0	1085879..1086469	-	196	62290009	-	BruAb1_1100	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1019	 55.76	0	1086490..1086984	-	164	62290010	coaD	BruAb1_1101	-	phosphopantetheine adenylyltransferase
1020	 55.00	0	1087200..1087439	-	79	62290011	-	BruAb1_1102	-	hypothetical protein
1021	 58.94	0	1087495..1090263	-	922	62290012	gyrA	BruAb1_1103	-	DNA gyrase subunit A
1022	 56.67	0	1090551..1091180	+	209	62290013	-	BruAb1_1104	-	hypothetical protein
1023	 55.79	0	1091271..1091849	-	192	62290014	-	BruAb1_1105	-	guanylate kinase
1024	 54.99	0	1092036..1092797	+	253	62290015	-	BruAb1_1106	-	GntR family transcriptional regulator
1025	 44.28	-2	1092940..1093341	+	133	62290016	-	BruAb1_1107	-	hypothetical protein
57.12	MEAN

4.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.