IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
47	 59.72	0	59692..60195	-	167	62289038	-	BruAb1_0052	-	hypothetical protein
48	 61.35	+1	60533..60739	-	68	62289039	-	BruAb1_0053	-	hypothetical protein
49	 58.61	0	60750..61754	-	334	62289040	-	BruAb1_0054	-	hypothetical protein
50	 59.65	0	61889..62287	-	132	62289041	-	BruAb1_0055	-	hypothetical protein
51	 58.33	0	62508..62903	-	131	62289042	-	BruAb1_0056	-	glyoxalase family protein
52	 62.20	+1	63100..64263	+	387	62289043	-	BruAb1_0057	-	mrp-related protein
53	 57.84	0	64492..66123	-	543	62289044	pgm	BruAb1_0058	-	phosphoglucomutase
54	 44.62	-2	66179..66364	-	61	62289045	-	BruAb1_0059	-	hypothetical protein
55	 59.73	0	66339..67232	-	297	62289046	-	BruAb1_0060	-	LysR family transcriptional regulator
56	 54.65	0	67357..68280	+	307	62289047	-	BruAb1_0061	-	dienelactone hydrolase domain-containing protein
57	 59.36	0	68395..69051	+	218	62289048	frcK	BruAb1_0062	-	putative fructose transport system kinase
58	 58.84	0	69151..69840	+	229	62289049	-	BruAb1_0063	-	fumarylacetoacetate hydrolase family protein
59	 52.60	-1	69860..70051	+	63	62289050	-	BruAb1_0064	-	hypothetical protein
60	 46.76	-2	70113..70328	+	71	62289051	-	BruAb1_0065	-	hypothetical protein
61	 51.85	-1	70494..70682	+	62	62289052	-	BruAb1_0066	-	hypothetical protein
62	 62.38	+1	70697..71560	+	287	62289053	-	BruAb1_0067	-	transglycosylase SLT domain-containing protein
63	 57.84	0	71742..72398	+	218	62289054	-	BruAb1_0068	-	hemolysin III family channel protein
64	 60.39	0	72539..75772	-	1077	62289055	dnaE2	BruAb1_0069	-	error-prone DNA polymerase
65	 65.02	+1	75772..77229	-	485	62289056	-	BruAb1_0070	-	hypothetical protein
66	 64.00	+1	77249..78112	-	287	62289057	-	BruAb1_0071	-	hypothetical protein
67	 54.03	0	80281..82551	+	756	62289058	-	BruAb1_0072	-	outer membrane protein
68	 53.92	0	82760..83308	+	182	62289059	-	BruAb1_0073	-	hypothetical protein
69	 58.23	0	83387..84607	-	406	62289060	argG	BruAb1_0074	-	argininosuccinate synthase
70	 56.40	0	84704..85453	+	249	62289061	-	BruAb1_0075	-	amino acid efflux LysE family protein
71	 57.94	0	85457..85960	-	167	62289062	-	BruAb1_0076	-	hypothetical protein
72	 59.14	0	85994..87229	-	411	62289063	-	BruAb1_0077	-	hypothetical protein
73	 57.54	0	87489..87992	-	167	62289064	-	BruAb1_0078	-	hypothetical protein
74	 63.54	+1	88432..88815	-	127	62289065	-	BruAb1_0079	-	hypothetical protein
75	 54.76	0	88903..89196	-	97	62289066	phhB	BruAb1_0080	-	pterin-4-alpha-carbinolamine dehydratase
76	 61.25	0	89936..90526	-	196	62289067	-	BruAb1_0082	-	hypothetical protein
77	 56.06	0	90707..91432	-	241	62289068	-	BruAb1_0083	-	lipase/acylhydrolase domain-containing protein
78	 61.87	+1	91579..92307	+	242	62289069	-	BruAb1_0084	-	ABC transporter, ATP-binding protein
79	 61.73	+1	92304..94853	+	849	62289070	-	BruAb1_0085	-	ABC transporter, permease protein
80	 57.86	0	95087..95824	+	245	62289071	-	BruAb1_0086	-	hypothetical protein
81	 54.73	0	96497..96898	-	133	62289072	-	BruAb1_0088	-	hypothetical protein
82	 57.14	0	97448..98182	-	244	62289073	-	BruAb1_0089	-	hypothetical protein
83	 60.27	0	98459..101146	-	895	62289074	acnA	BruAb1_0090	-	aconitate hydratase
84	 58.33	0	101490..102137	+	215	62289075	ccmA	BruAb1_0091	-	cytochrome c biogenesis protein CcmA
85	 62.31	+1	102137..102802	+	221	62289076	ccmB	BruAb1_0092	-	CcmB, heme exporter protein
86	 58.40	0	102860..103645	+	261	62289077	ccmC	BruAb1_0093	-	CcmC, heme exporter protein
87	 56.90	0	103642..103815	+	57	62289078	-	BruAb1_0094	-	heme exporter protein D
88	 59.31	0	103812..104423	+	203	62289079	cycY	BruAb1_0095	-	thiol:disulfide interchange protein CycY
89	 61.00	0	104672..106507	-	611	62289080	ilvD	BruAb1_0096	-	dihydroxy-acid dehydratase
90	 54.35	0	106688..106825	+	45	62289081	-	BruAb1_0097	-	hypothetical protein
91	 61.66	+1	106906..107364	-	152	62289082	-	BruAb1_0098	-	hypothetical protein
92	 59.79	0	107364..107741	-	125	62289083	-	BruAb1_0099	-	response regulator
93	 49.37	-1	107916..108152	-	78	62289084	-	BruAb1_0100	-	transcriptional regulator
94	 56.79	0	108805..109209	+	134	62289085	-	BruAb1_0101	-	hypothetical protein
95	 57.02	0	109295..109999	-	234	62289086	-	BruAb1_0102	-	hypothetical protein
96	 53.97	0	110071..110889	+	272	62289087	-	BruAb1_0103	-	hypothetical protein
97	 57.73	0	111168..112196	+	342	62289088	-	BruAb1_0104	-	sulfate ABC transporter, sulfate-binding protein
98	 59.40	0	112291..113157	+	288	62289089	-	BruAb1_0105	-	sulfate ABC transporter, permease protein
99	 59.05	0	113147..114013	+	288	62289090	cysW-1	BruAb1_0106	-	CysW-1, sulfate ABC transporter, permease protein
100	 61.39	+1	114111..115190	+	359	62289091	-	BruAb1_0107	-	sulfate ABC transporter ATP-binding protein
101	 60.50	0	115576..124179	+	2867	62289092	-	BruAb1_0108	-	cyclic beta 1-2 glucan synthetase
102	 58.39	0	124269..125573	+	434	62289093	pncB	BruAb1_0109	-	nicotinate phosphoribosyltransferase
103	 60.77	0	125615..126445	-	276	62289094	-	BruAb1_0110	-	PhzF family phenazine biosynthesis protein
104	 55.77	0	126555..127343	-	262	62289095	-	BruAb1_0111	-	hypothetical protein
105	 59.33	0	127366..128292	-	308	62289096	cscK	BruAb1_0112	-	CscK, fructokinase
106	 59.60	0	128383..129189	-	268	62289097	-	BruAb1_0113	-	short chain dehydrogenase/reductase family oxidoreductase
107	 60.12	0	129310..131601	-	763	62289098	-	BruAb1_0114	-	1A family penicillin-binding protein
108	 56.13	0	131807..132499	-	230	62289099	-	BruAb1_0115	-	hypothetical protein
109	 56.19	0	132766..133452	-	228	62289100	-	BruAb1_0116	-	hypothetical protein
110	 56.15	0	133684..134301	-	205	62289101	-	BruAb1_0117	-	3-5 exonuclease family protein
111	 59.46	0	134340..135755	-	471	62289102	-	BruAb1_0118	-	hypothetical protein
112	 53.52	0	135908..136234	+	108	62289103	-	BruAb1_0119	-	hypothetical protein
113	 59.35	0	136316..139252	+	978	62289104	polA	BruAb1_0120	-	DNA polymerase I
114	 60.29	0	139394..141274	+	626	62289105	-	BruAb1_0121	-	DEAD-box ATP dependent DNA helicase
115	 59.84	0	141370..143802	-	810	62289106	gyrB	BruAb1_0122	-	DNA gyrase subunit B
116	 49.40	-1	143862..144029	-	55	62289107	-	BruAb1_0123	-	hypothetical protein
117	 57.95	0	144130..144966	-	278	62289108	-	BruAb1_0124	-	esterase
118	 56.62	0	145629..146096	-	155	62289109	-	BruAb1_0126	-	acetyltransferase
119	 60.92	0	146096..147208	-	370	62289110	-	BruAb1_0127	-	glutathione-dependent formaldehyde dehydrogenase
120	 60.94	0	150203..151495	+	430	62289111	-	BruAb1_0130	-	sensor histidine kinase
121	 58.01	0	151587..151898	+	103	62289112	-	BruAb1_0131	-	IS711, transposase orfA
122	 52.28	-1	151885..152322	+	145	62289113	-	BruAb1_0132	-	IS711, transposase orfB
123	 45.54	-2	152514..152726	+	70	62289114	-	BruAb1_0133	-	hypothetical protein
124	 60.46	0	152922..153485	+	187	62289115	-	BruAb1_0134	-	DNA-binding response regulator
125	 63.43	+1	153491..153985	-	164	62289116	-	BruAb1_0135	-	hypothetical protein
126	 57.33	0	154255..154875	+	206	62289117	-	BruAb1_0136	-	lipoprotein
127	 59.69	0	154965..155537	-	190	62289118	-	BruAb1_0137	-	NifU-related protein
128	 60.33	0	155646..156134	-	162	62289119	-	BruAb1_0138	-	hypothetical protein
129	 59.83	0	156192..157259	-	355	161611216	trpS	BruAb1_0139	-	tryptophanyl-tRNA synthetase
130	 60.00	0	157356..158945	-	529	62289121	mviN	BruAb1_0140	-	MviN, virulence factor
131	 58.54	0	158959..161763	-	934	62289122	-	BruAb1_0141	-	PII uridylyl-transferase
132	 60.37	0	164356..167088	+	910	62289123	mutS	BruAb1_0143	-	DNA mismatch repair protein
133	 59.10	0	167394..168239	-	281	62289124	-	BruAb1_0144	-	hypothetical protein
134	 52.80	-1	168562..169044	-	160	62289125	lspA	BruAb1_0145	-	LspA, lipoprotein signal peptidase
135	 59.84	0	169046..169939	-	297	62289126	-	BruAb1_0146	-	RNA methyltransferase
136	 61.26	0	169936..171081	-	381	62289127	-	BruAb1_0147	-	SAM dependent methyltransferase
137	 58.95	0	171194..171517	-	107	62289128	-	BruAb1_0148	-	hypothetical protein
138	 56.84	0	171527..171811	-	94	62289129	ihfB	BruAb1_0149	-	integration host factor subunit beta
139	 60.04	0	171858..172853	-	331	62289130	sppA	BruAb1_0150	-	SppA, signal peptide peptidase SppA
140	 55.35	0	173372..174025	+	217	62289131	-	BruAb1_0151	-	hypothetical protein
141	 60.81	0	174349..174963	+	204	62289132	-	BruAb1_0152	-	hypothetical protein
142	 59.95	0	174975..175808	+	277	62289133	-	BruAb1_0153	-	ABC transporter, ATP-binding protein
143	 57.75	0	176104..177606	+	500	62289134	rpoN	BruAb1_0154	-	RNA polymerase factor sigma-54
144	 46.72	-2	177755..178120	-	121	62289135	-	BruAb1_0155	-	hypothetical protein
145	 58.75	0	178356..178949	+	197	62289136	yfiA	BruAb1_0156	-	YfiA, ribosomal subunit interface protein
146	 58.49	0	179052..179516	+	154	62289137	ptsN	BruAb1_0157	-	PtsN, PTS system, nitrogen regulatory IIA component
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.