IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
885	 57.62	0	930610..931029	+	139	62289876	-	BruAb1_0944	-	hypothetical protein
886	 51.65	-1	931063..932034	-	323	62289877	-	BruAb1_0945	-	glycosyl transferase, group 2 family protein
887	 54.51	0	932437..933234	+	265	62289878	ppnK	BruAb1_0946	-	inorganic polyphosphate/ATP-NAD kinase
888	 57.83	0	933562..935010	+	482	62289879	-	BruAb1_0947	-	DEAD-box ATP dependent DNA helicase
889	 57.48	0	935248..935628	-	126	62289880	-	BruAb1_0948	-	HesB/YadR/YfhF family protein
890	 54.84	0	936322..936414	+	30	62289881	-	BruAb1_0950	-	hypothetical protein
891	 59.70	0	936418..936618	+	66	62289882	-	BruAb1_0951	-	heavy metal-binding domain-containing protein
892	 56.05	0	936945..937613	+	222	62289883	-	BruAb1_0953	-	protein-L-isoaspartate O-methyltransferase
893	 59.01	0	937752..939122	+	456	62289884	-	BruAb1_0954	-	outer membrane efflux family protein
894	 58.06	0	939372..940103	+	243	62289885	-	BruAb1_0955	-	hypothetical protein
895	 49.02	-1	940198..940401	+	67	62289886	-	BruAb1_0956	-	hypothetical protein
896	 57.15	0	940394..943126	+	910	62289887	valS	BruAb1_0957	-	valyl-tRNA synthetase
897	 54.20	0	947375..948040	-	221	62289888	mobA	BruAb1_0963	-	MobA, molybdopterin-guanine dinucleotide biosynthesis protein A
898	 58.26	0	948216..949250	-	344	62289889	moaA	BruAb1_0964	-	molybdenum cofactor biosynthesis protein A
899	 55.28	0	949437..949796	+	119	62289890	-	BruAb1_0965	-	hypothetical protein
900	 58.33	0	951316..952935	-	539	62289891	fumB	BruAb1_0967	-	FumB, fumarate hydratase, class I
901	 47.62	-2	955739..955864	-	41	62289892	-	BruAb1_0969	-	hypothetical protein
902	 53.97	0	956045..956296	-	83	62289893	-	BruAb1_0970	-	hypothetical protein
903	 54.94	0	956451..956612	+	53	62289894	-	BruAb1_0971	-	hypothetical protein
904	 50.78	-1	956805..957830	-	341	62289895	-	BruAb1_0972	-	phage integrase family site specific recombinase
905	 57.12	0	958005..959051	+	348	62289896	-	BruAb1_0973	-	hypothetical protein
906	 51.52	-1	959203..959433	+	76	62289897	-	BruAb1_0974	-	hypothetical protein
907	 57.61	0	959430..959705	+	91	62289898	-	BruAb1_0975	-	hypothetical protein
908	 52.05	-1	961607..961777	-	56	62289899	-	BruAb1_0978	-	hypothetical protein
909	 49.44	-1	961795..961974	+	59	62289900	-	BruAb1_0979	-	hypothetical protein
910	 55.56	0	962125..962439	-	104	62289901	-	BruAb1_0980	-	hypothetical protein
911	 47.66	-2	962439..962759	-	106	62289902	-	BruAb1_0981	-	hypothetical protein
912	 58.33	0	963547..963858	+	103	62289903	-	BruAb1_0983	-	IS711, transposase orfA
913	 52.41	-1	963848..964282	+	144	62289904	-	BruAb1_0984	-	IS711, transposase orfB
914	 48.50	-2	965301..966836	+	511	62289905	-	BruAb1_0986	-	hypothetical protein
915	 46.63	-2	967162..968394	+	410	62289906	wboA	BruAb1_0987	-	glycosyl transferase WboA
916	 45.00	-2	968391..969950	+	519	62289907	-	BruAb1_0988	-	glycosyl transferase, group 1 family protein
917	 43.24	-2	969931..970152	-	73	62289908	-	BruAb1_0989	-	hypothetical protein
918	 59.68	0	970297..971055	+	252	62289909	-	BruAb1_0990	-	secretion activator protein
919	 53.70	0	971019..971288	-	89	62289910	-	BruAb1_0991	-	hypothetical protein
920	 46.08	-2	971776..971877	+	33	62289911	-	BruAb1_0993	-	hypothetical protein
921	 42.34	-2	971913..972023	+	36	62289912	-	BruAb1_0994	-	hypothetical protein
922	 55.46	0	972014..972361	+	115	62289913	-	BruAb1_0995	-	arsenate reductase ArsC
923	 57.82	0	972732..973997	+	421	62289914	-	BruAb1_0996	-	rare lipoprotein A family protein
924	 58.19	0	974108..975298	+	396	62289915	-	BruAb1_0997	-	D-alanyl-D-alanine carboxypeptidase
925	 57.39	0	975389..976024	+	211	62289916	tmk	BruAb1_0998	-	Tmk, thymidylate kinase
926	 59.74	0	976021..977103	+	360	62289917	-	BruAb1_0999	-	DNA polymerase III subunit delta'
927	 56.00	0	977123..977272	+	49	62289918	-	BruAb1_1000	-	hypothetical protein
928	 57.82	0	977272..978819	+	515	62289919	metG	BruAb1_1001	-	methionyl-tRNA synthetase
929	 55.81	0	978828..979619	+	263	62289920	-	BruAb1_1002	-	TatD family hydrolase
930	 56.53	0	979622..980440	+	272	62289921	-	BruAb1_1003	-	hypothetical protein
931	 59.61	0	980490..982289	-	599	62289922	-	BruAb1_1004	-	cyclic beta-1,2-glucan ABC transporter
932	 59.33	0	982602..983582	+	326	62289923	-	BruAb1_1005	-	ribosomal large subunit pseudouridine synthase C
933	 54.11	0	983585..984508	+	307	62289924	-	BruAb1_1006	-	hypothetical protein
934	 57.51	0	984505..985170	+	221	62289925	-	BruAb1_1007	-	HAD superfamily hydrolase
935	 58.49	0	985212..985994	+	260	62289926	-	BruAb1_1008	-	hypothetical protein
936	 55.46	0	986120..987529	-	469	62289927	glnA	BruAb1_1009	-	GlnA, glutamine synthetase, type I
937	 53.69	0	987677..988015	-	112	62289928	glnB	BruAb1_1010	-	GlnB, nitrogen regulatory protein P-II
938	 60.49	0	988322..989827	+	501	62289929	-	BruAb1_1011	-	YjeF family protein
939	 54.58	0	989858..990130	-	90	62289930	-	BruAb1_1012	-	hypothetical protein
940	 57.45	0	990127..990831	-	234	62289931	cbbZ	BruAb1_1013	-	phosphoglycolate phosphatase
941	 51.75	-1	990886..990999	+	37	62289932	-	BruAb1_1014	-	hypothetical protein
942	 57.37	0	991178..991876	+	232	62289933	rpiA	BruAb1_1015	-	ribose-5-phosphate isomerase A
943	 59.59	0	991902..992438	+	178	62289934	-	BruAb1_1016	-	hypothetical protein
944	 55.70	0	992592..993986	+	464	62289935	gor	BruAb1_1017	-	glutathione reductase
945	 58.99	0	994195..995574	+	459	62289936	dhs	BruAb1_1018	-	Dhs, phospho-2-dehydro-3-deoxyheptonate aldolase, class II
946	 53.85	0	995688..996038	+	116	62289937	dgkA	BruAb1_1019	-	DgkA, diacylglycerol kinase
947	 56.93	0	996130..997782	+	550	62289938	nadE	BruAb1_1020	-	NAD synthetase
948	 57.28	0	997794..999167	+	457	62289939	gltX	BruAb1_1021	-	glutamyl-tRNA synthetase
949	 59.66	0	999981..1002305	-	774	62289940	maeB	BruAb1_1022	-	malic enzyme
950	 57.70	0	1002523..1003503	-	326	62289941	-	BruAb1_1023	-	mandelate racemase/muconate lactonizing enzyme family protein
951	 55.87	0	1003564..1004739	+	391	62289942	-	BruAb1_1024	-	toulene ABC transporter permease
952	 56.41	0	1004956..1005813	+	285	62289943	-	BruAb1_1025	-	ABC transporter, ATP-binding protein
953	 55.52	0	1005817..1006812	+	331	62289944	-	BruAb1_1026	-	ABC transporter, periplasmic substrate-binding protein
954	 55.56	0	1006836..1007438	+	200	62289945	-	BruAb1_1027	-	lipoprotein
955	 50.93	-1	1007500..1007607	-	35	62289946	-	BruAb1_1028	-	hypothetical protein
956	 59.65	0	1007678..1012339	-	1553	62289947	-	BruAb1_1029	-	hypothetical protein
957	 48.05	-2	1012554..1012784	+	76	62289948	-	BruAb1_1030	-	hypothetical protein
958	 60.80	0	1012955..1013278	+	107	62289949	-	BruAb1_1031	-	ferredoxin, 2Fe-2S
959	 56.52	0	1013924..1014544	-	206	62289950	-	BruAb1_1033	-	hypothetical protein
960	 57.98	0	1014702..1015541	+	279	62289951	folP	BruAb1_1034	-	FolP, dihydropteroate synthase
961	 52.78	-1	1015560..1015919	+	119	62289952	folB	BruAb1_1035	-	FolB, dihydroneopterin aldolase
962	 59.55	0	1015916..1016449	+	177	62289953	folK	BruAb1_1036	-	FolK, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
963	 56.81	0	1016564..1017121	-	185	62289954	-	BruAb1_1037	-	hypothetical protein
964	 59.50	0	1017373..1018446	-	357	62289955	-	BruAb1_1038	-	hypothetical protein
965	 58.59	0	1018443..1019903	-	486	62289956	-	BruAb1_1039	-	hypothetical protein
966	 54.09	0	1019996..1020496	-	166	62289957	-	BruAb1_1040	-	hypothetical protein
967	 52.04	-1	1020892..1021308	+	138	62289958	dksA	BruAb1_1041	-	DksA, dnaK suppressor protein
968	 44.79	-2	1021318..1021413	+	31	62289959	-	BruAb1_1042	-	hypothetical protein
969	 60.30	0	1021454..1022710	-	418	62289960	-	BruAb1_1043	-	hypothetical protein
970	 58.53	0	1022936..1025773	+	945	62289961	-	BruAb1_1044	-	sensory box histidine kinase/response regulator
971	 57.57	0	1025798..1027006	+	402	62289962	-	BruAb1_1045	-	hypothetical protein
972	 55.56	0	1027037..1028359	+	440	62289963	-	BruAb1_1046	-	hypothetical protein
973	 51.18	-1	1028340..1029566	-	408	62289964	-	BruAb1_1047	-	hypothetical protein
974	 57.49	0	1029656..1033438	-	1260	62289965	-	BruAb1_1048	-	ribonucleotide-diphosphate reductase subunit alpha
975	 47.50	-2	1033491..1033730	+	79	62289966	-	BruAb1_1049	-	hypothetical protein
976	 59.51	0	1034140..1034628	-	162	62289967	-	BruAb1_1050	-	MutT/nudix family protein
977	 59.34	0	1035817..1036662	-	281	62289968	-	BruAb1_1052	-	hypothetical protein
978	 57.44	0	1036740..1037498	-	252	62289969	-	BruAb1_1053	-	cinA-related protein
979	 59.00	0	1037659..1038258	+	199	62289970	wrbA	BruAb1_1054	-	TrpR binding protein WrbA
980	 50.67	-1	1038236..1038385	-	49	62289971	-	BruAb1_1055	-	hypothetical protein
981	 53.89	0	1038560..1039819	+	419	62289972	-	BruAb1_1056	-	threonine dehydratase
982	 61.97	+1	1039886..1041481	+	531	62289973	-	BruAb1_1057	-	DEAD-box ATP dependent DNA helicase
983	 58.11	0	1041652..1042680	+	342	62289974	-	BruAb1_1058	-	cysteine synthase A
984	 55.91	0	1042683..1043426	+	247	62289975	-	BruAb1_1059	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.