IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
828	 57.49	0	866943..867650	+	235	62289819	-	BruAb1_0886	-	hypothetical protein
829	 54.74	0	867730..868056	-	108	62289820	-	BruAb1_0887	-	HesB/YadR/YfhF family protein
830	 58.56	0	868223..869431	+	402	62289821	dgt	BruAb1_0888	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
831	 56.94	0	869654..871411	+	585	62289822	argS	BruAb1_0889	-	arginyl-tRNA synthetase
832	 59.30	0	871623..874595	+	990	62289823	-	BruAb1_0890	-	hypothetical protein
833	 59.22	0	874796..875815	+	339	62289824	-	BruAb1_0891	-	glycosy hydrolase family protein
834	 60.92	0	875888..876739	+	283	62289825	-	BruAb1_0892	-	hypothetical protein
835	 60.74	0	876732..877457	+	241	62289826	-	BruAb1_0893	-	hypothetical protein
836	 56.16	0	877603..877821	+	72	62289827	tatA	BruAb1_0894	-	twin argininte translocase protein A
837	 56.05	0	877902..878513	+	203	62289828	-	BruAb1_0895	-	sec-independent translocase
838	 57.21	0	878510..879334	+	274	62289829	tatC	BruAb1_0896	-	TatC, Sec-independent protein translocase protein TatC
839	 59.35	0	879411..880694	+	427	62289830	serS	BruAb1_0897	-	seryl-tRNA synthetase
840	 60.81	0	880843..881610	+	255	62289831	surE	BruAb1_0898	-	stationary phase survival protein SurE
841	 58.45	0	881607..882275	+	222	62289832	pcm	BruAb1_0899	-	protein-L-isoaspartate O-methyltransferase
842	 60.67	0	882669..883952	+	427	62289833	-	BruAb1_0900	-	M24/M37 family peptidase
843	 54.90	0	884001..884867	-	288	62289834	-	BruAb1_0901	-	hypothetical protein
844	 54.39	0	885028..885369	+	113	62289835	-	BruAb1_0902	-	preprotein translocase, YajC subunit
845	 56.87	0	885539..887815	+	758	62289836	-	BruAb1_0903	-	SecD/SecF family protein-export membrane protein
846	 60.51	0	887818..888207	+	129	62289837	-	BruAb1_0904	-	hypothetical protein
847	 58.03	0	888213..889046	+	277	62289838	-	BruAb1_0905	-	hypothetical protein
848	 59.74	0	889098..890498	-	466	62289839	-	BruAb1_0906	-	tRNA (uracil-5-)-methyltransferase Gid
849	 59.86	0	890740..890886	-	48	62289840	-	BruAb1_0907	-	hypothetical protein
850	 56.73	0	891160..892296	+	378	62289841	-	BruAb1_0908	-	hypothetical protein
851	 56.14	0	892293..892862	+	189	62289842	-	BruAb1_0909	-	hypothetical protein
852	 56.11	0	893242..894681	+	479	62289843	tig	BruAb1_0910	-	trigger factor
853	 57.22	0	894831..896333	+	500	62289844	gatB	BruAb1_0911	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
854	 53.37	0	896333..896836	+	167	62289845	-	BruAb1_0912	-	acetyltransferase
855	 46.83	-2	897466..897591	+	41	62289846	-	BruAb1_0914	-	hypothetical protein
856	 57.96	0	897600..898070	+	156	62289847	-	BruAb1_0915	-	hypothetical protein
857	 59.19	0	898114..898728	-	204	62289848	aat	BruAb1_0916	-	leucyl/phenylalanyl-tRNA--protein transferase
858	 57.54	0	898734..900092	-	452	62289849	accC	BruAb1_0917	-	acetyl-CoA carboxylase biotin carboxylase subunit
859	 61.15	0	900142..900612	-	156	62289850	accB	BruAb1_0918	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
860	 54.64	0	900614..901087	-	157	62289851	aroQ	BruAb1_0919	-	3-dehydroquinate dehydratase
861	 56.14	0	901331..902128	-	265	62289852	-	BruAb1_0920	-	hypothetical protein
862	 58.47	0	902176..903591	-	471	62289853	-	BruAb1_0921	-	hypothetical protein
863	 59.36	0	903783..904946	+	387	62289854	-	BruAb1_0922	-	aminotransferase, class I
864	 58.83	0	905065..907833	-	922	62289855	-	BruAb1_0923	-	ribonuclease Rne/Rng domain-containing protein
865	 60.22	0	907836..908021	+	61	62289856	-	BruAb1_0924	-	hypothetical protein
866	 56.90	0	908512..909780	+	422	62289857	-	BruAb1_0925	-	N-acetylmuramoyl-L-alanine amidase
867	 58.29	0	910060..912519	+	819	62289858	-	BruAb1_0926	-	penicillin-binding protein 1A
868	 57.76	0	912823..913788	+	321	62289859	-	BruAb1_0927	-	peptide chain release factor 2
869	 58.33	0	914004..914315	+	103	62289860	-	BruAb1_0928	-	transposase
870	 53.79	0	914305..914739	+	144	62289861	-	BruAb1_0929	-	IS711, transposase orfB
871	 52.94	0	914793..914894	-	33	62289862	-	BruAb1_0930	-	hypothetical protein
872	 61.71	+1	914891..915253	-	120	62289863	-	BruAb1_0931	-	hypothetical protein
873	 57.00	0	915424..916251	-	275	62289864	-	BruAb1_0932	-	hypothetical protein
874	 56.13	0	916273..916737	-	154	62289865	bcp	BruAb1_0933	-	Bcp, bacterioferritin comigratory protein
875	 56.60	0	917024..920422	+	1132	62289866	-	BruAb1_0934	-	hypothetical protein
876	 58.37	0	920481..921734	-	417	62289867	tyrS	BruAb1_0935	-	tyrosyl-tRNA synthetase
877	 60.52	0	921850..922971	+	373	62289868	anmK	BruAb1_0936	-	anhydro-N-acetylmuramic acid kinase
878	 55.56	0	922968..923300	-	110	62289869	qacH	BruAb1_0937	-	QacH, quaternary ammonium compound-resistance protein
879	 57.48	0	923412..924086	-	224	62289870	-	BruAb1_0938	-	hypothetical protein
880	 60.14	0	924291..925469	+	392	62289871	-	BruAb1_0939	-	cysteine desulfurase
881	 55.91	0	925650..927173	+	507	62289872	-	BruAb1_0940	-	cysteine desulfurase activator complex subunit SufB
882	 55.95	0	927241..927996	+	251	62289873	-	BruAb1_0941	-	ABC transporter, ATP-binding protein
883	 59.31	0	928010..929287	+	425	62289874	-	BruAb1_0942	-	hypothetical protein
884	 55.58	0	929369..930613	+	414	62289875	-	BruAb1_0943	-	aminotransferase, class V
885	 57.62	0	930610..931029	+	139	62289876	-	BruAb1_0944	-	hypothetical protein
886	 51.65	-1	931063..932034	-	323	62289877	-	BruAb1_0945	-	glycosyl transferase, group 2 family protein
887	 54.51	0	932437..933234	+	265	62289878	ppnK	BruAb1_0946	-	inorganic polyphosphate/ATP-NAD kinase
888	 57.83	0	933562..935010	+	482	62289879	-	BruAb1_0947	-	DEAD-box ATP dependent DNA helicase
889	 57.48	0	935248..935628	-	126	62289880	-	BruAb1_0948	-	HesB/YadR/YfhF family protein
890	 54.84	0	936322..936414	+	30	62289881	-	BruAb1_0950	-	hypothetical protein
891	 59.70	0	936418..936618	+	66	62289882	-	BruAb1_0951	-	heavy metal-binding domain-containing protein
892	 56.05	0	936945..937613	+	222	62289883	-	BruAb1_0953	-	protein-L-isoaspartate O-methyltransferase
893	 59.01	0	937752..939122	+	456	62289884	-	BruAb1_0954	-	outer membrane efflux family protein
894	 58.06	0	939372..940103	+	243	62289885	-	BruAb1_0955	-	hypothetical protein
895	 49.02	-1	940198..940401	+	67	62289886	-	BruAb1_0956	-	hypothetical protein
896	 57.15	0	940394..943126	+	910	62289887	valS	BruAb1_0957	-	valyl-tRNA synthetase
897	 54.20	0	947375..948040	-	221	62289888	mobA	BruAb1_0963	-	MobA, molybdopterin-guanine dinucleotide biosynthesis protein A
898	 58.26	0	948216..949250	-	344	62289889	moaA	BruAb1_0964	-	molybdenum cofactor biosynthesis protein A
899	 55.28	0	949437..949796	+	119	62289890	-	BruAb1_0965	-	hypothetical protein
900	 58.33	0	951316..952935	-	539	62289891	fumB	BruAb1_0967	-	FumB, fumarate hydratase, class I
901	 47.62	-2	955739..955864	-	41	62289892	-	BruAb1_0969	-	hypothetical protein
902	 53.97	0	956045..956296	-	83	62289893	-	BruAb1_0970	-	hypothetical protein
903	 54.94	0	956451..956612	+	53	62289894	-	BruAb1_0971	-	hypothetical protein
904	 50.78	-1	956805..957830	-	341	62289895	-	BruAb1_0972	-	phage integrase family site specific recombinase
905	 57.12	0	958005..959051	+	348	62289896	-	BruAb1_0973	-	hypothetical protein
906	 51.52	-1	959203..959433	+	76	62289897	-	BruAb1_0974	-	hypothetical protein
907	 57.61	0	959430..959705	+	91	62289898	-	BruAb1_0975	-	hypothetical protein
908	 52.05	-1	961607..961777	-	56	62289899	-	BruAb1_0978	-	hypothetical protein
909	 49.44	-1	961795..961974	+	59	62289900	-	BruAb1_0979	-	hypothetical protein
910	 55.56	0	962125..962439	-	104	62289901	-	BruAb1_0980	-	hypothetical protein
911	 47.66	-2	962439..962759	-	106	62289902	-	BruAb1_0981	-	hypothetical protein
912	 58.33	0	963547..963858	+	103	62289903	-	BruAb1_0983	-	IS711, transposase orfA
913	 52.41	-1	963848..964282	+	144	62289904	-	BruAb1_0984	-	IS711, transposase orfB
914	 48.50	-2	965301..966836	+	511	62289905	-	BruAb1_0986	-	hypothetical protein
915	 46.63	-2	967162..968394	+	410	62289906	wboA	BruAb1_0987	-	glycosyl transferase WboA
916	 45.00	-2	968391..969950	+	519	62289907	-	BruAb1_0988	-	glycosyl transferase, group 1 family protein
917	 43.24	-2	969931..970152	-	73	62289908	-	BruAb1_0989	-	hypothetical protein
918	 59.68	0	970297..971055	+	252	62289909	-	BruAb1_0990	-	secretion activator protein
919	 53.70	0	971019..971288	-	89	62289910	-	BruAb1_0991	-	hypothetical protein
920	 46.08	-2	971776..971877	+	33	62289911	-	BruAb1_0993	-	hypothetical protein
921	 42.34	-2	971913..972023	+	36	62289912	-	BruAb1_0994	-	hypothetical protein
922	 55.46	0	972014..972361	+	115	62289913	-	BruAb1_0995	-	arsenate reductase ArsC
923	 57.82	0	972732..973997	+	421	62289914	-	BruAb1_0996	-	rare lipoprotein A family protein
924	 58.19	0	974108..975298	+	396	62289915	-	BruAb1_0997	-	D-alanyl-D-alanine carboxypeptidase
925	 57.39	0	975389..976024	+	211	62289916	tmk	BruAb1_0998	-	Tmk, thymidylate kinase
926	 59.74	0	976021..977103	+	360	62289917	-	BruAb1_0999	-	DNA polymerase III subunit delta'
927	 56.00	0	977123..977272	+	49	62289918	-	BruAb1_1000	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.