IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
738	 52.78	-1	784199..784522	+	107	62289729	ihfA	BruAb1_0793	-	integration host factor subunit alpha
739	 58.01	0	785056..785598	+	180	62289730	-	BruAb1_0794	-	hypothetical protein
740	 53.14	0	785648..785965	-	105	62289731	sugE	BruAb1_0795	-	SugE, SugE protein
741	 55.62	0	786311..787849	-	512	62289732	-	BruAb1_0796	-	sugar transferase
742	 55.56	0	787979..788194	-	71	62289733	-	BruAb1_0797	-	hypothetical protein
743	 53.40	0	788203..788790	-	195	62289734	-	BruAb1_0798	-	capsule polysaccharide export protein
744	 54.75	0	788914..789576	+	220	62289735	-	BruAb1_0799	-	hypothetical protein
745	 54.79	0	789644..789862	-	72	62289736	-	BruAb1_0800	-	hypothetical protein
746	 58.59	0	790214..791290	+	358	62289737	-	BruAb1_0801	-	cytochrome c oxidase assembly protein
747	 59.27	0	791443..792375	-	310	62289738	argC	BruAb1_0802	-	N-acetyl-gamma-glutamyl-phosphate reductase
748	 59.52	0	792465..793415	-	316	62289739	-	BruAb1_0803	-	agmatinase
749	 61.43	+1	793506..793982	-	158	62289740	rpsI	BruAb1_0804	-	30S ribosomal protein S9
750	 57.42	0	793985..794449	-	154	62289741	rplM	BruAb1_0805	-	50S ribosomal protein L13
751	 58.84	0	794685..795131	-	148	62289742	-	BruAb1_0806	-	hypothetical protein
752	 57.24	0	795365..796648	+	427	62289743	-	BruAb1_0807	-	O-acetylhomoserine aminocarboxypropyltransferase
753	 51.52	-1	797353..797484	+	43	62289744	-	BruAb1_0809	-	hypothetical protein
754	 46.08	-2	797738..798247	+	169	62289745	-	BruAb1_0810	-	hypothetical protein
755	 47.73	-2	798244..798639	+	131	62289746	-	BruAb1_0811	-	hypothetical protein
756	 51.49	-1	798693..799028	+	111	62289747	-	BruAb1_0812	-	hypothetical protein
757	 48.26	-2	799085..799486	-	133	62289748	-	BruAb1_0813	-	hypothetical protein
758	 43.72	-2	799783..799965	+	60	62289749	-	BruAb1_0814	-	hypothetical protein
759	 53.92	0	800349..800552	-	67	62289750	-	BruAb1_0815	-	hypothetical protein
760	 52.46	-1	801060..801425	+	121	62289751	nuoA	BruAb1_0816	-	NADH dehydrogenase subunit A
761	 59.97	0	801416..801997	+	193	62289752	nuoB	BruAb1_0817	-	NADH dehydrogenase subunit B
762	 56.65	0	802110..802718	+	202	62289753	nuoC	BruAb1_0818	-	NADH dehydrogenase subunit C
763	 57.93	0	802736..803926	+	396	62289754	nuoD	BruAb1_0819	-	NADH dehydrogenase subunit D
764	 58.54	0	803926..804639	+	237	62289755	nuoE	BruAb1_0820	-	NADH dehydrogenase subunit E
765	 59.40	0	804643..805950	+	435	62289756	nuoF	BruAb1_0821	-	NADH dehydrogenase I subunit F
766	 61.15	0	806085..808169	+	694	62289757	nuoG	BruAb1_0822	-	NADH dehydrogenase subunit G
767	 55.27	0	808189..809232	+	347	62289758	nuoH	BruAb1_0823	-	NADH dehydrogenase subunit H
768	 58.94	0	809245..809736	+	163	62289759	nuoI	BruAb1_0824	-	NADH dehydrogenase subunit I
769	 57.77	0	809910..810527	+	205	62289760	nuoJ	BruAb1_0825	-	NADH dehydrogenase subunit J
770	 51.78	-1	810538..810846	+	102	62289761	nuoK	BruAb1_0826	-	NADH dehydrogenase subunit K
771	 57.30	0	810854..812839	+	661	62289762	nuoL	BruAb1_0827	-	NADH dehydrogenase subunit L
772	 57.59	0	812839..814347	+	502	62289763	nuoM	BruAb1_0828	-	NADH dehydrogenase subunit M
773	 56.99	0	814369..815805	+	478	62289764	nuoN	BruAb1_0829	-	NADH dehydrogenase subunit N
774	 58.40	0	815831..816628	+	265	62289765	-	BruAb1_0830	-	biotin--protein ligase
775	 59.75	0	816822..818498	+	558	62289766	-	BruAb1_0831	-	metallo-beta-lactamase family protein
776	 57.28	0	818538..818942	+	134	62289767	-	BruAb1_0832	-	glyoxalase family protein
777	 53.70	0	818945..819214	+	89	62289768	-	BruAb1_0833	-	hypothetical protein
778	 53.90	0	819572..819712	+	46	62289769	-	BruAb1_0834	-	hypothetical protein
779	 38.71	-2	819743..819835	+	30	62289770	-	BruAb1_0835	-	hypothetical protein
780	 56.88	0	820062..821390	+	442	62289771	proS	BruAb1_0836	-	prolyl-tRNA synthetase
781	 57.13	0	821432..822700	+	422	62289772	-	BruAb1_0837	-	ABC transporter, permease protein
782	 61.55	+1	822700..823383	+	227	62289773	lolD	BruAb1_0838	-	LolD, lipoprotein releasing system ATP-binding protein
783	 57.99	0	824042..827533	+	1163	62289774	dnaE	BruAb1_0839	-	DNA polymerase III subunit alpha
784	 55.56	0	827574..827771	+	65	62289775	-	BruAb1_0840	-	hypothetical protein
785	 51.69	-1	827816..828229	-	137	62289776	-	BruAb1_0841	-	hypothetical protein
786	 57.61	0	829808..830425	+	205	62289777	rpsD	BruAb1_0843	-	30S ribosomal protein S4
787	 55.33	0	830954..831835	+	293	62289778	-	BruAb1_0844	-	hypothetical protein
788	 57.97	0	831822..832649	+	275	62289779	-	BruAb1_0845	-	inositol monophosphatase family protein
789	 58.21	0	832864..834129	-	421	62289780	-	BruAb1_0846	-	Bcr/CflA subfamily drug resistance transporter
790	 53.54	0	834215..834313	+	32	62289781	-	BruAb1_0847	-	hypothetical protein
791	 50.13	-1	834400..834792	-	130	62289782	-	BruAb1_0848	-	glutaredoxin-related protein
792	 58.55	0	834917..835150	-	77	62289783	-	BruAb1_0849	-	bolA-related protein
793	 59.15	0	835420..837642	-	740	62289784	purL	BruAb1_0850	-	phosphoribosylformylglycinamidine synthase II
794	 62.44	+1	837829..838230	-	133	62289785	-	BruAb1_0851	-	lipoprotein
795	 56.94	0	838290..838937	-	215	62289786	-	BruAb1_0852	-	glutathione S-transferase family protein
796	 60.57	0	839189..839860	-	223	62289787	purQ	BruAb1_0853	-	phosphoribosylformylglycinamidine synthase subunit I
797	 58.85	0	839883..840125	-	80	62289788	-	BruAb1_0854	-	phosphoribosylformylglycinamidine synthase subunit PurS
798	 55.95	0	840241..841005	-	254	62289789	purC	BruAb1_0855	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
799	 56.17	0	841261..841584	+	107	62289790	-	BruAb1_0856	-	hypothetical protein
800	 57.94	0	841649..842416	+	255	62289791	-	BruAb1_0857	-	hydroxyacid aldolase
801	 58.73	0	842465..843031	-	188	62289792	-	BruAb1_0858	-	hypothetical protein
802	 52.94	0	843041..843142	-	33	62289793	-	BruAb1_0859	-	hypothetical protein
803	 60.48	0	843384..844175	+	263	62289794	-	BruAb1_0860	-	glyoxalase family protein
804	 59.45	0	844401..845702	-	433	62289795	purB	BruAb1_0861	-	adenylosuccinate lyase
805	 60.62	0	845729..846406	-	225	62289796	rpe	BruAb1_0862	-	Rpe, ribulose-phosphate 3-epimerase
806	 57.50	0	846564..847490	-	308	62289797	-	BruAb1_0863	-	lipid A biosynthesis lauroyl acyltransferase
807	 61.42	+1	847504..848532	-	342	62289798	-	BruAb1_0864	-	alcohol dehydrogenase, zinc-containing
808	 60.64	0	848614..849891	-	425	62289799	-	BruAb1_0865	-	3-oxoacyl-(acyl carrier protein) synthase II
809	 60.83	0	849893..851074	-	393	62289800	-	BruAb1_0866	-	3-oxoacyl-(acyl carrier protein) synthase II
810	 51.06	-1	851222..851503	-	93	62289801	-	BruAb1_0867	-	acyl carrier protein
811	 60.24	0	851704..852465	-	253	62289802	-	BruAb1_0868	-	hypothetical protein
812	 57.09	0	852681..853703	+	340	62289803	galM	BruAb1_0869	-	GalM, aldose 1-epimerase
813	 59.85	0	853678..854616	-	312	62289804	-	BruAb1_0870	-	2-dehydro-3-deoxygluconokinase
814	 58.33	0	854805..855536	+	243	62289805	-	BruAb1_0871	-	hypothetical protein
815	 59.04	0	855540..856679	+	379	62289806	phnM	BruAb1_0872	-	PhnM, PhnM protein
816	 58.48	0	856676..857359	-	227	62289807	-	BruAb1_0873	-	HAD superfamily hydrolase
817	 55.13	0	857615..858403	+	262	62289808	-	BruAb1_0874	-	amino acid ABC transporter periplasmic-binding protein
818	 59.24	0	858595..859617	+	340	62289809	-	BruAb1_0875	-	tRNA-dihydrouridine synthase A
819	 57.45	0	859614..860318	-	234	62289810	-	BruAb1_0876	-	hypothetical protein
820	 53.33	0	860318..860512	-	64	62289811	-	BruAb1_0877	-	hypothetical protein
821	 62.32	+1	860532..861314	-	260	62289812	cobS	BruAb1_0878	-	cobalamin synthase
822	 61.96	+1	861468..862487	+	339	62289813	cobT	BruAb1_0879	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
823	 54.58	0	862595..863074	-	159	62289814	-	BruAb1_0880	-	AsnC family transcriptional regulator
824	 58.48	0	863173..863844	-	223	62289815	-	BruAb1_0881	-	hypothetical protein
825	 47.67	-2	864480..864758	+	92	62289816	-	BruAb1_0883	-	hypothetical protein
826	 57.21	0	865130..865933	+	267	62289817	exoR	BruAb1_0884	-	ExoR, exopolysacchride production negative regulator
827	 54.66	0	865992..866774	-	260	62289818	xth-1	BruAb1_0885	-	Xth-1, exodeoxyribonuclease III
828	 57.49	0	866943..867650	+	235	62289819	-	BruAb1_0886	-	hypothetical protein
829	 54.74	0	867730..868056	-	108	62289820	-	BruAb1_0887	-	HesB/YadR/YfhF family protein
830	 58.56	0	868223..869431	+	402	62289821	dgt	BruAb1_0888	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
831	 56.94	0	869654..871411	+	585	62289822	argS	BruAb1_0889	-	arginyl-tRNA synthetase
832	 59.30	0	871623..874595	+	990	62289823	-	BruAb1_0890	-	hypothetical protein
833	 59.22	0	874796..875815	+	339	62289824	-	BruAb1_0891	-	glycosy hydrolase family protein
834	 60.92	0	875888..876739	+	283	62289825	-	BruAb1_0892	-	hypothetical protein
835	 60.74	0	876732..877457	+	241	62289826	-	BruAb1_0893	-	hypothetical protein
836	 56.16	0	877603..877821	+	72	62289827	tatA	BruAb1_0894	-	twin argininte translocase protein A
837	 56.05	0	877902..878513	+	203	62289828	-	BruAb1_0895	-	sec-independent translocase
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.