IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
688	 58.18	0	724865..726538	-	557	62289679	lldP	BruAb1_0737	-	LldP, L-lactate permease
689	 53.27	0	727072..727377	+	101	62289680	-	BruAb1_0738	-	oxidoreductase
690	 56.01	0	727943..728533	+	196	62289681	-	BruAb1_0739	-	hypothetical protein
691	 53.10	0	728754..729365	-	203	62289682	-	BruAb1_0740	-	exonuclease
692	 53.37	0	729690..730208	-	172	62289683	-	BruAb1_0741	-	adenylate kinase
693	 52.15	-1	730232..731767	-	511	62289684	-	BruAb1_0742	-	acetyltransferase
694	 51.57	-1	731742..732536	-	264	62289685	-	BruAb1_0743	-	Cro/CI family transcriptional regulator
695	 43.33	-2	732561..732980	-	139	62289686	-	BruAb1_0744	-	hypothetical protein
696	 53.29	0	733360..734256	+	298	62289687	-	BruAb1_0745	-	hypothetical protein
697	 52.34	-1	734256..736370	+	704	62289688	-	BruAb1_0746	-	transposase
698	 47.64	-2	737456..739147	+	563	62289689	-	BruAb1_0748	-	hypothetical protein
699	 47.98	-2	739185..739382	-	65	62289690	-	BruAb1_0749	-	hypothetical protein
700	 46.33	-2	739623..740930	+	435	62289691	-	BruAb1_0750	-	hypothetical protein
701	 56.88	0	742846..743724	+	292	62289692	-	BruAb1_0752	-	hypothetical protein
702	 60.24	0	744782..745030	-	82	62289693	-	BruAb1_0754	-	lipoprotein
703	 51.72	-1	745133..745219	-	28	62289694	-	BruAb1_0755	-	hypothetical protein
704	 56.49	0	745275..746414	-	379	62289695	metC	BruAb1_0756	-	cystathionine beta-lyase
705	 56.51	0	746655..747422	+	255	62289696	-	BruAb1_0757	-	PAP2 family protein
706	 54.82	0	748933..749160	+	75	62289697	-	BruAb1_0759	-	hypothetical protein
707	 55.06	0	751570..752379	+	269	62289698	-	BruAb1_0762	-	amino acid ABC transporter, ATP-binding protein
708	 58.96	0	752427..753632	-	401	62289699	-	BruAb1_0763	-	salicylate hydroxylase
709	 54.51	0	753662..753916	-	84	62289700	-	BruAb1_0764	-	hypothetical protein
710	 56.98	0	754202..756442	+	746	62289701	ppk	BruAb1_0765	-	polyphosphate kinase
711	 59.00	0	756439..757977	+	512	62289702	-	BruAb1_0766	-	Ppx/GppA family phosphatase
712	 60.36	0	758131..759288	-	385	62289703	rnd	BruAb1_0767	-	RND, ribonuclease D
713	 58.39	0	759515..761302	+	595	62289704	aspS	BruAb1_0768	-	aspartyl-tRNA synthetase
714	 55.89	0	761343..762539	-	398	62289705	-	BruAb1_0769	-	hypothetical protein
715	 46.67	-2	762594..762833	+	79	62289706	-	BruAb1_0770	-	hypothetical protein
716	 58.06	0	762939..765251	+	770	62289707	parC	BruAb1_0771	-	DNA topoisomerase IV subunit A
717	 58.53	0	765430..766179	-	249	62289708	-	BruAb1_0772	-	arginyl-tRNA-protein transferase
718	 53.93	0	766300..766770	-	156	62289709	-	BruAb1_0773	-	hypothetical protein
719	 59.34	0	766917..767954	-	345	62289710	hemB	BruAb1_0774	-	delta-aminolevulinic acid dehydratase
720	 58.29	0	768122..769171	+	349	62289711	-	BruAb1_0775	-	enoyl-CoA hydratase
721	 58.39	0	769185..769619	+	144	62289712	-	BruAb1_0776	-	hypothetical protein
722	 54.83	0	769850..770449	+	199	62289713	-	BruAb1_0777	-	MarR family transcriptional regulator
723	 53.19	0	770536..770676	-	46	62289714	-	BruAb1_0778	-	hypothetical protein
724	 58.06	0	770811..772112	+	433	62289715	-	BruAb1_0779	-	peptidoglycan-binding protein
725	 53.25	0	772109..772339	+	76	62289716	-	BruAb1_0780	-	hypothetical protein
726	 58.24	0	772343..773659	+	438	62289717	glyA	BruAb1_0781	-	serine hydroxymethyltransferase
727	 58.07	0	773901..774377	+	158	62289718	-	BruAb1_0782	-	transcriptional regulator NrdR
728	 61.76	+1	774379..775500	+	373	62289719	ribD	BruAb1_0783	-	RibD, riboflavin biosynthesis protein RibD
729	 57.31	0	775500..776108	+	202	62289720	ribE	BruAb1_0784	-	riboflavin synthase subunit alpha
730	 57.81	0	776191..776664	+	157	62289721	ribH	BruAb1_0785	-	riboflavin synthase subunit beta
731	 59.11	0	776670..777185	+	171	62289722	nusB	BruAb1_0786	-	transcription antitermination protein NusB
732	 59.71	0	777636..779792	+	718	62289723	hppA	BruAb1_0787	-	membrane-bound proton-translocating pyrophosphatase
733	 58.00	0	779864..780382	-	172	62289724	-	BruAb1_0788	-	hypothetical protein
734	 53.33	0	780472..781026	+	184	62289725	-	BruAb1_0789	-	hypothetical protein
735	 55.20	0	781146..781703	+	185	62289726	-	BruAb1_0790	-	hypothetical protein
736	 58.12	0	781821..782861	+	346	62289727	plsX	BruAb1_0791	-	putative glycerol-3-phosphate acyltransferase PlsX
737	 59.57	0	783109..784080	+	323	62289728	fabH	BruAb1_0792	-	3-oxoacyl-(acyl carrier protein) synthase III
738	 52.78	-1	784199..784522	+	107	62289729	ihfA	BruAb1_0793	-	integration host factor subunit alpha
739	 58.01	0	785056..785598	+	180	62289730	-	BruAb1_0794	-	hypothetical protein
740	 53.14	0	785648..785965	-	105	62289731	sugE	BruAb1_0795	-	SugE, SugE protein
741	 55.62	0	786311..787849	-	512	62289732	-	BruAb1_0796	-	sugar transferase
742	 55.56	0	787979..788194	-	71	62289733	-	BruAb1_0797	-	hypothetical protein
743	 53.40	0	788203..788790	-	195	62289734	-	BruAb1_0798	-	capsule polysaccharide export protein
744	 54.75	0	788914..789576	+	220	62289735	-	BruAb1_0799	-	hypothetical protein
745	 54.79	0	789644..789862	-	72	62289736	-	BruAb1_0800	-	hypothetical protein
746	 58.59	0	790214..791290	+	358	62289737	-	BruAb1_0801	-	cytochrome c oxidase assembly protein
747	 59.27	0	791443..792375	-	310	62289738	argC	BruAb1_0802	-	N-acetyl-gamma-glutamyl-phosphate reductase
748	 59.52	0	792465..793415	-	316	62289739	-	BruAb1_0803	-	agmatinase
749	 61.43	+1	793506..793982	-	158	62289740	rpsI	BruAb1_0804	-	30S ribosomal protein S9
750	 57.42	0	793985..794449	-	154	62289741	rplM	BruAb1_0805	-	50S ribosomal protein L13
751	 58.84	0	794685..795131	-	148	62289742	-	BruAb1_0806	-	hypothetical protein
752	 57.24	0	795365..796648	+	427	62289743	-	BruAb1_0807	-	O-acetylhomoserine aminocarboxypropyltransferase
753	 51.52	-1	797353..797484	+	43	62289744	-	BruAb1_0809	-	hypothetical protein
754	 46.08	-2	797738..798247	+	169	62289745	-	BruAb1_0810	-	hypothetical protein
755	 47.73	-2	798244..798639	+	131	62289746	-	BruAb1_0811	-	hypothetical protein
756	 51.49	-1	798693..799028	+	111	62289747	-	BruAb1_0812	-	hypothetical protein
757	 48.26	-2	799085..799486	-	133	62289748	-	BruAb1_0813	-	hypothetical protein
758	 43.72	-2	799783..799965	+	60	62289749	-	BruAb1_0814	-	hypothetical protein
759	 53.92	0	800349..800552	-	67	62289750	-	BruAb1_0815	-	hypothetical protein
760	 52.46	-1	801060..801425	+	121	62289751	nuoA	BruAb1_0816	-	NADH dehydrogenase subunit A
761	 59.97	0	801416..801997	+	193	62289752	nuoB	BruAb1_0817	-	NADH dehydrogenase subunit B
762	 56.65	0	802110..802718	+	202	62289753	nuoC	BruAb1_0818	-	NADH dehydrogenase subunit C
763	 57.93	0	802736..803926	+	396	62289754	nuoD	BruAb1_0819	-	NADH dehydrogenase subunit D
764	 58.54	0	803926..804639	+	237	62289755	nuoE	BruAb1_0820	-	NADH dehydrogenase subunit E
765	 59.40	0	804643..805950	+	435	62289756	nuoF	BruAb1_0821	-	NADH dehydrogenase I subunit F
766	 61.15	0	806085..808169	+	694	62289757	nuoG	BruAb1_0822	-	NADH dehydrogenase subunit G
767	 55.27	0	808189..809232	+	347	62289758	nuoH	BruAb1_0823	-	NADH dehydrogenase subunit H
768	 58.94	0	809245..809736	+	163	62289759	nuoI	BruAb1_0824	-	NADH dehydrogenase subunit I
769	 57.77	0	809910..810527	+	205	62289760	nuoJ	BruAb1_0825	-	NADH dehydrogenase subunit J
770	 51.78	-1	810538..810846	+	102	62289761	nuoK	BruAb1_0826	-	NADH dehydrogenase subunit K
771	 57.30	0	810854..812839	+	661	62289762	nuoL	BruAb1_0827	-	NADH dehydrogenase subunit L
772	 57.59	0	812839..814347	+	502	62289763	nuoM	BruAb1_0828	-	NADH dehydrogenase subunit M
773	 56.99	0	814369..815805	+	478	62289764	nuoN	BruAb1_0829	-	NADH dehydrogenase subunit N
774	 58.40	0	815831..816628	+	265	62289765	-	BruAb1_0830	-	biotin--protein ligase
775	 59.75	0	816822..818498	+	558	62289766	-	BruAb1_0831	-	metallo-beta-lactamase family protein
776	 57.28	0	818538..818942	+	134	62289767	-	BruAb1_0832	-	glyoxalase family protein
777	 53.70	0	818945..819214	+	89	62289768	-	BruAb1_0833	-	hypothetical protein
778	 53.90	0	819572..819712	+	46	62289769	-	BruAb1_0834	-	hypothetical protein
779	 38.71	-2	819743..819835	+	30	62289770	-	BruAb1_0835	-	hypothetical protein
780	 56.88	0	820062..821390	+	442	62289771	proS	BruAb1_0836	-	prolyl-tRNA synthetase
781	 57.13	0	821432..822700	+	422	62289772	-	BruAb1_0837	-	ABC transporter, permease protein
782	 61.55	+1	822700..823383	+	227	62289773	lolD	BruAb1_0838	-	LolD, lipoprotein releasing system ATP-binding protein
783	 57.99	0	824042..827533	+	1163	62289774	dnaE	BruAb1_0839	-	DNA polymerase III subunit alpha
784	 55.56	0	827574..827771	+	65	62289775	-	BruAb1_0840	-	hypothetical protein
785	 51.69	-1	827816..828229	-	137	62289776	-	BruAb1_0841	-	hypothetical protein
786	 57.61	0	829808..830425	+	205	62289777	rpsD	BruAb1_0843	-	30S ribosomal protein S4
787	 55.33	0	830954..831835	+	293	62289778	-	BruAb1_0844	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.