IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
653	 59.45	0	690135..690965	-	276	62289644	ksgA	BruAb1_0701	-	dimethyladenosine transferase
654	 60.47	0	690962..691993	-	343	62289645	pdxA	BruAb1_0702	-	4-hydroxythreonine-4-phosphate dehydrogenase
655	 56.74	0	692058..693014	-	318	62289646	-	BruAb1_0703	-	peptidyl-prolyl cis-trans isomerase
656	 55.53	0	693342..695720	-	792	62289647	-	BruAb1_0704	-	organic solvent tolerance protein
657	 54.27	0	695741..696829	-	362	62289648	-	BruAb1_0705	-	hypothetical protein
658	 56.00	0	696826..698034	-	402	62289649	-	BruAb1_0706	-	hypothetical protein
659	 47.06	-2	698207..698308	-	33	62289650	-	BruAb1_0707	-	hypothetical protein
660	 58.63	0	698444..699937	+	497	62289651	-	BruAb1_0708	-	leucyl aminopeptidase
661	 56.22	0	700009..700458	+	149	62289652	-	BruAb1_0709	-	DNA polymerase III subunit chi
662	 62.06	+1	700458..701021	+	187	62289653	-	BruAb1_0710	-	hypothetical protein
663	 58.70	0	701098..702981	-	627	62289654	-	BruAb1_0711	-	ABC transporter, ATP-binding protein
664	 56.92	0	703024..703536	-	170	62289655	-	BruAb1_0712	-	hypothetical protein
665	 57.92	0	703765..704187	+	140	62289656	ndk	BruAb1_0713	-	nucleoside diphosphate kinase
666	 57.11	0	704284..705099	-	271	62289657	-	BruAb1_0714	-	hypothetical protein
667	 56.50	0	705337..705828	-	163	62289658	moaE	BruAb1_0715	-	MoaE, molybdopterin converting factor, subunit 2
668	 53.10	0	705830..706087	-	85	62289659	moaD	BruAb1_0716	-	MoaD, molybdopterin converting factor, subunit 1
669	 55.21	0	706092..706676	-	194	62289660	pgsA	BruAb1_0717	-	PgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
670	 59.58	0	706795..708867	-	690	161611214	uvrC	BruAb1_0718	-	excinuclease ABC subunit C
671	 58.86	0	708867..709622	-	251	62289662	-	BruAb1_0719	-	short chain dehydrogenase
672	 57.94	0	710024..710665	+	213	62289663	-	BruAb1_0720	-	outer-membrane protein, 25 kDa
673	 57.50	0	710762..711361	-	199	62289664	-	BruAb1_0721	-	glutathione S-transferase family protein
674	 58.70	0	711416..712105	-	229	62289665	-	BruAb1_0722	-	ribonuclease T2 family protein
675	 61.57	+1	712118..712588	-	156	62289666	-	BruAb1_0723	-	hypothetical protein
676	 57.96	0	712671..713543	-	290	62289667	-	BruAb1_0724	-	hypothetical protein
677	 62.41	+1	713699..714544	+	281	62289668	-	BruAb1_0725	-	hypothetical protein
678	 59.33	0	714622..716748	+	708	62289669	-	BruAb1_0726	-	oxidoreductase
679	 63.05	+1	716975..717499	-	174	62289670	-	BruAb1_0727	-	hypothetical protein
680	 59.87	0	717675..718292	-	205	161611213	purN	BruAb1_0728	-	phosphoribosylglycinamide formyltransferase
681	 60.74	0	718289..719368	-	359	62289672	purM	BruAb1_0729	-	phosphoribosylaminoimidazole synthetase
682	 51.67	-1	719410..719589	-	59	62289673	-	BruAb1_0730	-	hypothetical protein
683	 58.97	0	721738..722607	+	289	62289674	-	BruAb1_0732	-	epimerase/dehydratase family protein
684	 62.60	+1	722604..723389	-	261	62289675	-	BruAb1_0733	-	hypothetical protein
685	 58.30	0	723462..724166	-	234	62289676	-	BruAb1_0734	-	short chain dehydrogenase/reductase family oxidoreductase
686	 50.00	-1	724328..724543	-	71	62289677	-	BruAb1_0735	-	hypothetical protein
687	 39.74	-2	724557..724712	+	51	62289678	-	BruAb1_0736	-	hypothetical protein
688	 58.18	0	724865..726538	-	557	62289679	lldP	BruAb1_0737	-	LldP, L-lactate permease
689	 53.27	0	727072..727377	+	101	62289680	-	BruAb1_0738	-	oxidoreductase
690	 56.01	0	727943..728533	+	196	62289681	-	BruAb1_0739	-	hypothetical protein
691	 53.10	0	728754..729365	-	203	62289682	-	BruAb1_0740	-	exonuclease
692	 53.37	0	729690..730208	-	172	62289683	-	BruAb1_0741	-	adenylate kinase
693	 52.15	-1	730232..731767	-	511	62289684	-	BruAb1_0742	-	acetyltransferase
694	 51.57	-1	731742..732536	-	264	62289685	-	BruAb1_0743	-	Cro/CI family transcriptional regulator
695	 43.33	-2	732561..732980	-	139	62289686	-	BruAb1_0744	-	hypothetical protein
696	 53.29	0	733360..734256	+	298	62289687	-	BruAb1_0745	-	hypothetical protein
697	 52.34	-1	734256..736370	+	704	62289688	-	BruAb1_0746	-	transposase
698	 47.64	-2	737456..739147	+	563	62289689	-	BruAb1_0748	-	hypothetical protein
699	 47.98	-2	739185..739382	-	65	62289690	-	BruAb1_0749	-	hypothetical protein
700	 46.33	-2	739623..740930	+	435	62289691	-	BruAb1_0750	-	hypothetical protein
701	 56.88	0	742846..743724	+	292	62289692	-	BruAb1_0752	-	hypothetical protein
702	 60.24	0	744782..745030	-	82	62289693	-	BruAb1_0754	-	lipoprotein
703	 51.72	-1	745133..745219	-	28	62289694	-	BruAb1_0755	-	hypothetical protein
704	 56.49	0	745275..746414	-	379	62289695	metC	BruAb1_0756	-	cystathionine beta-lyase
705	 56.51	0	746655..747422	+	255	62289696	-	BruAb1_0757	-	PAP2 family protein
706	 54.82	0	748933..749160	+	75	62289697	-	BruAb1_0759	-	hypothetical protein
707	 55.06	0	751570..752379	+	269	62289698	-	BruAb1_0762	-	amino acid ABC transporter, ATP-binding protein
708	 58.96	0	752427..753632	-	401	62289699	-	BruAb1_0763	-	salicylate hydroxylase
709	 54.51	0	753662..753916	-	84	62289700	-	BruAb1_0764	-	hypothetical protein
710	 56.98	0	754202..756442	+	746	62289701	ppk	BruAb1_0765	-	polyphosphate kinase
711	 59.00	0	756439..757977	+	512	62289702	-	BruAb1_0766	-	Ppx/GppA family phosphatase
712	 60.36	0	758131..759288	-	385	62289703	rnd	BruAb1_0767	-	RND, ribonuclease D
713	 58.39	0	759515..761302	+	595	62289704	aspS	BruAb1_0768	-	aspartyl-tRNA synthetase
714	 55.89	0	761343..762539	-	398	62289705	-	BruAb1_0769	-	hypothetical protein
715	 46.67	-2	762594..762833	+	79	62289706	-	BruAb1_0770	-	hypothetical protein
716	 58.06	0	762939..765251	+	770	62289707	parC	BruAb1_0771	-	DNA topoisomerase IV subunit A
717	 58.53	0	765430..766179	-	249	62289708	-	BruAb1_0772	-	arginyl-tRNA-protein transferase
718	 53.93	0	766300..766770	-	156	62289709	-	BruAb1_0773	-	hypothetical protein
719	 59.34	0	766917..767954	-	345	62289710	hemB	BruAb1_0774	-	delta-aminolevulinic acid dehydratase
720	 58.29	0	768122..769171	+	349	62289711	-	BruAb1_0775	-	enoyl-CoA hydratase
721	 58.39	0	769185..769619	+	144	62289712	-	BruAb1_0776	-	hypothetical protein
722	 54.83	0	769850..770449	+	199	62289713	-	BruAb1_0777	-	MarR family transcriptional regulator
723	 53.19	0	770536..770676	-	46	62289714	-	BruAb1_0778	-	hypothetical protein
724	 58.06	0	770811..772112	+	433	62289715	-	BruAb1_0779	-	peptidoglycan-binding protein
725	 53.25	0	772109..772339	+	76	62289716	-	BruAb1_0780	-	hypothetical protein
726	 58.24	0	772343..773659	+	438	62289717	glyA	BruAb1_0781	-	serine hydroxymethyltransferase
727	 58.07	0	773901..774377	+	158	62289718	-	BruAb1_0782	-	transcriptional regulator NrdR
728	 61.76	+1	774379..775500	+	373	62289719	ribD	BruAb1_0783	-	RibD, riboflavin biosynthesis protein RibD
729	 57.31	0	775500..776108	+	202	62289720	ribE	BruAb1_0784	-	riboflavin synthase subunit alpha
730	 57.81	0	776191..776664	+	157	62289721	ribH	BruAb1_0785	-	riboflavin synthase subunit beta
731	 59.11	0	776670..777185	+	171	62289722	nusB	BruAb1_0786	-	transcription antitermination protein NusB
732	 59.71	0	777636..779792	+	718	62289723	hppA	BruAb1_0787	-	membrane-bound proton-translocating pyrophosphatase
733	 58.00	0	779864..780382	-	172	62289724	-	BruAb1_0788	-	hypothetical protein
734	 53.33	0	780472..781026	+	184	62289725	-	BruAb1_0789	-	hypothetical protein
735	 55.20	0	781146..781703	+	185	62289726	-	BruAb1_0790	-	hypothetical protein
736	 58.12	0	781821..782861	+	346	62289727	plsX	BruAb1_0791	-	putative glycerol-3-phosphate acyltransferase PlsX
737	 59.57	0	783109..784080	+	323	62289728	fabH	BruAb1_0792	-	3-oxoacyl-(acyl carrier protein) synthase III
738	 52.78	-1	784199..784522	+	107	62289729	ihfA	BruAb1_0793	-	integration host factor subunit alpha
739	 58.01	0	785056..785598	+	180	62289730	-	BruAb1_0794	-	hypothetical protein
740	 53.14	0	785648..785965	-	105	62289731	sugE	BruAb1_0795	-	SugE, SugE protein
741	 55.62	0	786311..787849	-	512	62289732	-	BruAb1_0796	-	sugar transferase
742	 55.56	0	787979..788194	-	71	62289733	-	BruAb1_0797	-	hypothetical protein
743	 53.40	0	788203..788790	-	195	62289734	-	BruAb1_0798	-	capsule polysaccharide export protein
744	 54.75	0	788914..789576	+	220	62289735	-	BruAb1_0799	-	hypothetical protein
745	 54.79	0	789644..789862	-	72	62289736	-	BruAb1_0800	-	hypothetical protein
746	 58.59	0	790214..791290	+	358	62289737	-	BruAb1_0801	-	cytochrome c oxidase assembly protein
747	 59.27	0	791443..792375	-	310	62289738	argC	BruAb1_0802	-	N-acetyl-gamma-glutamyl-phosphate reductase
748	 59.52	0	792465..793415	-	316	62289739	-	BruAb1_0803	-	agmatinase
749	 61.43	+1	793506..793982	-	158	62289740	rpsI	BruAb1_0804	-	30S ribosomal protein S9
750	 57.42	0	793985..794449	-	154	62289741	rplM	BruAb1_0805	-	50S ribosomal protein L13
751	 58.84	0	794685..795131	-	148	62289742	-	BruAb1_0806	-	hypothetical protein
752	 57.24	0	795365..796648	+	427	62289743	-	BruAb1_0807	-	O-acetylhomoserine aminocarboxypropyltransferase
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.