IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
599	 53.68	0	646151..646435	-	94	62289590	-	BruAb1_0647	-	hypothetical protein
600	 56.98	0	646654..646911	+	85	62289591	-	BruAb1_0648	-	hypothetical protein
601	 54.91	0	646971..647744	-	257	62289592	-	BruAb1_0649	-	hypothetical protein
602	 60.42	0	648009..648104	+	31	62289593	-	BruAb1_0650	-	hypothetical protein
603	 57.76	0	648398..649048	+	216	62289594	-	BruAb1_0651	-	hypothetical protein
604	 62.13	+1	649093..649467	-	124	62289595	-	BruAb1_0652	-	hypothetical protein
605	 55.82	0	649485..650618	-	377	62289596	-	BruAb1_0653	-	histidinol-phosphate aminotransferase
606	 52.21	-1	650981..651907	-	308	62289597	-	BruAb1_0654	-	phage integrase family site specific recombinase
607	 57.45	0	652181..653146	-	321	62289598	omp2a	BruAb1_0655	-	Omp2a, porin
608	 42.59	-2	653800..653907	-	35	62289599	-	BruAb1_0656	-	hypothetical protein
609	 57.00	0	653947..655074	+	375	62289600	omp2b	BruAb1_0657	-	Omp2b, porin
610	 53.74	0	655218..655859	+	213	62289601	-	BruAb1_0658	-	hypothetical protein
611	 48.26	-2	655909..656109	-	66	62289602	-	BruAb1_0659	-	hypothetical protein
612	 57.63	0	656158..656832	+	224	62289603	-	BruAb1_0660	-	hypothetical protein
613	 59.82	0	656895..658952	-	685	62289604	-	BruAb1_0661	-	transglycosylase SLT domain-containing protein
614	 44.09	-2	659123..659215	+	30	62289605	-	BruAb1_0662	-	hypothetical protein
615	 56.92	0	659428..660309	+	293	62289606	dapA	BruAb1_0663	-	dihydrodipicolinate synthase
616	 55.77	0	660400..660876	+	158	62289607	smpB	BruAb1_0664	-	SsrA-binding protein
617	 58.18	0	661112..661783	-	223	62289608	-	BruAb1_0665	-	SPO1 DNA polymerase-related protein
618	 54.34	0	661814..662389	-	191	62289609	-	BruAb1_0666	-	hypothetical protein
619	 35.26	-2	662589..662744	-	51	62289610	-	BruAb1_0667	-	hypothetical protein
620	 56.22	0	662786..663187	+	133	62289611	rpoZ	BruAb1_0668	-	DNA-directed RNA polymerase subunit omega
621	 57.97	0	663428..665680	+	750	62289612	-	BruAb1_0669	-	RelA/SpoT family protein
622	 60.45	0	665688..666266	+	192	62289613	pyrE	BruAb1_0670	-	orotate phosphoribosyltransferase
623	 56.49	0	666435..667181	+	248	62289614	-	BruAb1_0671	-	Crp/FNR family transcriptional regulator
624	 57.23	0	667562..668896	+	444	62289615	hemN-1	BruAb1_0672	-	coproporphyrinogen III oxidase
625	 59.24	0	669080..670291	-	403	62289616	fsr	BruAb1_0673	-	Fsr, fosmidomycin resistance protein
626	 58.57	0	670543..671382	+	279	62289617	-	BruAb1_0674	-	AraC family transcriptional regulator
627	 61.11	0	671432..672007	+	191	62289618	-	BruAb1_0675	-	hypothetical protein
628	 54.81	0	672004..672408	+	134	62289619	acpS	BruAb1_0676	-	4'-phosphopantetheinyl transferase
629	 56.58	0	672519..673301	+	260	62289620	-	BruAb1_0677	-	signal peptidase I
630	 58.81	0	673270..674007	+	245	62289621	rncS	BruAb1_0678	-	ribonuclease III
631	 55.56	0	674050..674148	+	32	62289622	-	BruAb1_0679	-	hypothetical protein
632	 57.59	0	674152..675087	+	311	62289623	era	BruAb1_0680	-	GTP-binding protein Era
633	 59.01	0	675114..675857	+	247	62289624	recO	BruAb1_0681	-	DNA repair protein RecO
634	 62.16	+1	675835..676344	-	169	62289625	-	BruAb1_0682	-	hypothetical protein
635	 59.74	0	676341..676961	-	206	62289626	-	BruAb1_0683	-	hypothetical protein
636	 57.75	0	676961..677824	-	287	62289627	-	BruAb1_0684	-	aminomethyltransferase
637	 59.70	0	677910..679244	+	444	62289628	pyrC-1	BruAb1_0685	-	dihydroorotase
638	 58.69	0	679293..680057	-	254	62289629	-	BruAb1_0686	-	hypothetical protein
639	 51.31	-1	680106..680372	-	88	62289630	-	BruAb1_0687	-	hypothetical protein
640	 55.73	0	680529..680912	-	127	62289631	-	BruAb1_0688	-	hypothetical protein
641	 58.33	0	680992..681435	-	147	62289632	-	BruAb1_0689	-	MutT/nudix family protein
642	 60.51	0	681521..682300	+	259	62289633	-	BruAb1_0690	-	hypothetical protein
643	 60.00	0	682355..682969	+	204	62289634	-	BruAb1_0691	-	amino acid transporter LysE
644	 57.74	0	682946..683113	-	55	62289635	-	BruAb1_0692	-	hypothetical protein
645	 48.78	-1	683239..683361	+	40	62289636	-	BruAb1_0693	-	hypothetical protein
646	 59.11	0	683480..685000	+	506	62289637	cysS	BruAb1_0694	-	cysteinyl-tRNA synthetase
647	 63.04	+1	685016..685153	+	45	62289638	-	BruAb1_0695	-	hypothetical protein
648	 64.44	+1	685153..685287	+	44	62289639	-	BruAb1_0696	-	hypothetical protein
649	 61.59	+1	685284..685421	+	45	62289640	-	BruAb1_0697	-	hypothetical protein
650	 59.36	0	685421..687034	+	537	62289641	-	BruAb1_0698	-	alpha-isopropylmalate/homocitrate synthase family transferase
651	 57.87	0	687281..688201	+	306	62289642	rarD	BruAb1_0699	-	RarD, RarD protein
652	 57.96	0	688334..690067	+	577	62289643	-	BruAb1_0700	-	M24/M37 family peptidase
653	 59.45	0	690135..690965	-	276	62289644	ksgA	BruAb1_0701	-	dimethyladenosine transferase
654	 60.47	0	690962..691993	-	343	62289645	pdxA	BruAb1_0702	-	4-hydroxythreonine-4-phosphate dehydrogenase
655	 56.74	0	692058..693014	-	318	62289646	-	BruAb1_0703	-	peptidyl-prolyl cis-trans isomerase
656	 55.53	0	693342..695720	-	792	62289647	-	BruAb1_0704	-	organic solvent tolerance protein
657	 54.27	0	695741..696829	-	362	62289648	-	BruAb1_0705	-	hypothetical protein
658	 56.00	0	696826..698034	-	402	62289649	-	BruAb1_0706	-	hypothetical protein
659	 47.06	-2	698207..698308	-	33	62289650	-	BruAb1_0707	-	hypothetical protein
660	 58.63	0	698444..699937	+	497	62289651	-	BruAb1_0708	-	leucyl aminopeptidase
661	 56.22	0	700009..700458	+	149	62289652	-	BruAb1_0709	-	DNA polymerase III subunit chi
662	 62.06	+1	700458..701021	+	187	62289653	-	BruAb1_0710	-	hypothetical protein
663	 58.70	0	701098..702981	-	627	62289654	-	BruAb1_0711	-	ABC transporter, ATP-binding protein
664	 56.92	0	703024..703536	-	170	62289655	-	BruAb1_0712	-	hypothetical protein
665	 57.92	0	703765..704187	+	140	62289656	ndk	BruAb1_0713	-	nucleoside diphosphate kinase
666	 57.11	0	704284..705099	-	271	62289657	-	BruAb1_0714	-	hypothetical protein
667	 56.50	0	705337..705828	-	163	62289658	moaE	BruAb1_0715	-	MoaE, molybdopterin converting factor, subunit 2
668	 53.10	0	705830..706087	-	85	62289659	moaD	BruAb1_0716	-	MoaD, molybdopterin converting factor, subunit 1
669	 55.21	0	706092..706676	-	194	62289660	pgsA	BruAb1_0717	-	PgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
670	 59.58	0	706795..708867	-	690	161611214	uvrC	BruAb1_0718	-	excinuclease ABC subunit C
671	 58.86	0	708867..709622	-	251	62289662	-	BruAb1_0719	-	short chain dehydrogenase
672	 57.94	0	710024..710665	+	213	62289663	-	BruAb1_0720	-	outer-membrane protein, 25 kDa
673	 57.50	0	710762..711361	-	199	62289664	-	BruAb1_0721	-	glutathione S-transferase family protein
674	 58.70	0	711416..712105	-	229	62289665	-	BruAb1_0722	-	ribonuclease T2 family protein
675	 61.57	+1	712118..712588	-	156	62289666	-	BruAb1_0723	-	hypothetical protein
676	 57.96	0	712671..713543	-	290	62289667	-	BruAb1_0724	-	hypothetical protein
677	 62.41	+1	713699..714544	+	281	62289668	-	BruAb1_0725	-	hypothetical protein
678	 59.33	0	714622..716748	+	708	62289669	-	BruAb1_0726	-	oxidoreductase
679	 63.05	+1	716975..717499	-	174	62289670	-	BruAb1_0727	-	hypothetical protein
680	 59.87	0	717675..718292	-	205	161611213	purN	BruAb1_0728	-	phosphoribosylglycinamide formyltransferase
681	 60.74	0	718289..719368	-	359	62289672	purM	BruAb1_0729	-	phosphoribosylaminoimidazole synthetase
682	 51.67	-1	719410..719589	-	59	62289673	-	BruAb1_0730	-	hypothetical protein
683	 58.97	0	721738..722607	+	289	62289674	-	BruAb1_0732	-	epimerase/dehydratase family protein
684	 62.60	+1	722604..723389	-	261	62289675	-	BruAb1_0733	-	hypothetical protein
685	 58.30	0	723462..724166	-	234	62289676	-	BruAb1_0734	-	short chain dehydrogenase/reductase family oxidoreductase
686	 50.00	-1	724328..724543	-	71	62289677	-	BruAb1_0735	-	hypothetical protein
687	 39.74	-2	724557..724712	+	51	62289678	-	BruAb1_0736	-	hypothetical protein
688	 58.18	0	724865..726538	-	557	62289679	lldP	BruAb1_0737	-	LldP, L-lactate permease
689	 53.27	0	727072..727377	+	101	62289680	-	BruAb1_0738	-	oxidoreductase
690	 56.01	0	727943..728533	+	196	62289681	-	BruAb1_0739	-	hypothetical protein
691	 53.10	0	728754..729365	-	203	62289682	-	BruAb1_0740	-	exonuclease
692	 53.37	0	729690..730208	-	172	62289683	-	BruAb1_0741	-	adenylate kinase
693	 52.15	-1	730232..731767	-	511	62289684	-	BruAb1_0742	-	acetyltransferase
694	 51.57	-1	731742..732536	-	264	62289685	-	BruAb1_0743	-	Cro/CI family transcriptional regulator
695	 43.33	-2	732561..732980	-	139	62289686	-	BruAb1_0744	-	hypothetical protein
696	 53.29	0	733360..734256	+	298	62289687	-	BruAb1_0745	-	hypothetical protein
697	 52.34	-1	734256..736370	+	704	62289688	-	BruAb1_0746	-	transposase
698	 47.64	-2	737456..739147	+	563	62289689	-	BruAb1_0748	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.