IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
543	 53.83	0	582460..583059	+	199	62289534	-	BruAb1_0588	-	Fe-Mn superoxide dismutase
544	 55.88	0	583069..583680	+	203	62289535	-	BruAb1_0589	-	hypothetical protein
545	 57.75	0	583684..585792	-	702	62289536	ptrB	BruAb1_0590	-	PtrB, protease
546	 54.31	0	586365..586793	+	142	62289537	-	BruAb1_0591	-	transcriptional regulator
547	 54.22	0	587001..587249	-	82	62289538	-	BruAb1_0592	-	hypothetical protein
548	 57.02	0	587493..587948	+	151	62289539	-	BruAb1_0593	-	hypothetical protein
549	 60.31	0	588095..588739	+	214	62289540	-	BruAb1_0594	-	hypothetical protein
550	 60.21	0	588850..590166	+	438	62289541	-	BruAb1_0595	-	amidase
551	 59.62	0	590207..590632	-	141	62289542	-	BruAb1_0596	-	hypothetical protein
552	 56.44	0	590712..591161	-	149	62289543	-	BruAb1_0597	-	hypothetical protein
553	 59.29	0	591452..593281	+	609	62289544	-	BruAb1_0598	-	sensor histidine kinase
554	 60.58	0	593256..594224	+	322	62289545	-	BruAb1_0599	-	peptidoglycan-binding protein
555	 56.90	0	594238..594585	+	115	62289546	-	BruAb1_0600	-	hypothetical protein
556	 58.50	0	594596..595672	-	358	62289547	-	BruAb1_0601	-	hypothetical protein
557	 54.88	0	595870..596412	-	180	62289548	-	BruAb1_0602	-	hypothetical protein
558	 62.91	+1	596405..597016	-	203	62289549	-	BruAb1_0603	-	hypothetical protein
559	 59.25	0	597023..599179	-	718	62289550	-	BruAb1_0604	-	penicillin-binding protein
560	 59.33	0	599600..600049	+	149	62289551	-	BruAb1_0605	-	hypothetical protein
561	 64.83	+1	600093..601235	+	380	62289552	-	BruAb1_0606	-	terminase large subunit
562	 62.06	+1	601267..602460	+	397	62289553	-	BruAb1_0607	-	portal protein
563	 61.38	+1	602457..602834	+	125	62289554	-	BruAb1_0608	-	hypothetical protein
564	 62.93	+1	602821..603489	+	222	62289555	-	BruAb1_0609	-	protease
565	 59.92	0	603511..604785	+	424	62289556	-	BruAb1_0610	-	major capsid protein
566	 58.91	0	604950..605516	+	188	62289557	-	BruAb1_0611	-	hypothetical protein
567	 58.11	0	605513..605851	+	112	62289558	-	BruAb1_0612	-	hypothetical protein
568	 57.68	0	605848..606381	+	177	62289559	-	BruAb1_0613	-	hypothetical protein
569	 58.21	0	606422..606835	+	137	62289560	-	BruAb1_0614	-	hypothetical protein
570	 61.90	+1	606838..607173	+	111	62289561	-	BruAb1_0615	-	hypothetical protein
571	 59.08	0	607940..608572	+	210	62289562	-	BruAb1_0617	-	hypothetical protein
572	 64.54	+1	609440..609862	+	140	62289563	-	BruAb1_0619	-	NLP/P60 family protein
573	 56.04	0	613794..614000	+	68	62289564	-	BruAb1_0621	-	hypothetical protein
574	 62.63	+1	614162..614458	+	98	62289565	-	BruAb1_0622	-	hypothetical protein
575	 57.97	0	614537..615226	+	229	62289566	-	BruAb1_0623	-	DNA-binding response regulator
576	 58.68	0	615223..616611	+	462	62289567	-	BruAb1_0624	-	sensor histidine kinase
577	 58.85	0	616672..617157	+	161	62289568	-	BruAb1_0625	-	outer membrane lipoprotein-related protein
578	 61.84	+1	617258..618397	+	379	62289569	-	BruAb1_0626	-	cytochrome c-type biogenesis protein
579	 59.44	0	618394..618891	+	165	62289570	ccmE	BruAb1_0627	-	cytochrome c-type biogenesis protein CcmE
580	 60.04	0	618911..620902	+	663	62289571	ccmF	BruAb1_0628	-	CcmF, cytochrome c-type biogenesis protein CcmF
581	 55.56	0	620899..621375	+	158	62289572	ccmh	BruAb1_0629	-	CcmH, cytochrome c-type biogenesis protein CcmH
582	 60.51	0	621517..623058	+	513	62289573	-	BruAb1_0630	-	serine protease
583	 60.17	0	623152..623859	+	235	62289574	-	BruAb1_0631	-	DNA-binding response regulator
584	 58.83	0	623859..625262	+	467	62289575	-	BruAb1_0632	-	sensor histidine kinase
585	 58.37	0	625721..628336	+	871	62289576	glnE	BruAb1_0633	-	GlnE, glutamate-ammonia-ligase adenylyltransferase
586	 50.52	-1	628381..630492	-	703	62289577	-	BruAb1_0634	-	hypothetical protein
587	 60.67	0	630763..633114	-	783	62289578	-	BruAb1_0635	-	histidine kinase
588	 59.39	0	633505..636156	-	883	62289579	pepN	BruAb1_0636	-	PepN, aminopeptidase N
589	 59.13	0	636427..637341	+	304	62289580	-	BruAb1_0637	-	hypothetical protein
590	 58.87	0	637346..638602	-	418	62289581	-	BruAb1_0638	-	transporter
591	 61.51	+1	638764..639636	-	290	62289582	-	BruAb1_0639	-	phage SPO1 DNA polymerase-related protein
592	 59.22	0	640025..641716	+	563	62289583	-	BruAb1_0640	-	electron transfer flavoprotein, oxidoreductase
593	 59.44	0	641832..642800	-	322	62289584	-	BruAb1_0641	-	AP endonuclease domain-containing protein
594	 58.48	0	642969..644471	-	500	161611215	amn	BruAb1_0642	-	AMP nucleosidase
595	 55.97	0	644524..644682	+	52	62289586	-	BruAb1_0643	-	hypothetical protein
596	 51.77	-1	644679..644960	+	93	62289587	-	BruAb1_0644	-	hypothetical protein
597	 54.57	0	645038..645748	+	236	62289588	-	BruAb1_0645	-	glutathione S-transferase family protein
598	 58.05	0	645807..646154	-	115	62289589	-	BruAb1_0646	-	hypothetical protein
599	 53.68	0	646151..646435	-	94	62289590	-	BruAb1_0647	-	hypothetical protein
600	 56.98	0	646654..646911	+	85	62289591	-	BruAb1_0648	-	hypothetical protein
601	 54.91	0	646971..647744	-	257	62289592	-	BruAb1_0649	-	hypothetical protein
602	 60.42	0	648009..648104	+	31	62289593	-	BruAb1_0650	-	hypothetical protein
603	 57.76	0	648398..649048	+	216	62289594	-	BruAb1_0651	-	hypothetical protein
604	 62.13	+1	649093..649467	-	124	62289595	-	BruAb1_0652	-	hypothetical protein
605	 55.82	0	649485..650618	-	377	62289596	-	BruAb1_0653	-	histidinol-phosphate aminotransferase
606	 52.21	-1	650981..651907	-	308	62289597	-	BruAb1_0654	-	phage integrase family site specific recombinase
607	 57.45	0	652181..653146	-	321	62289598	omp2a	BruAb1_0655	-	Omp2a, porin
608	 42.59	-2	653800..653907	-	35	62289599	-	BruAb1_0656	-	hypothetical protein
609	 57.00	0	653947..655074	+	375	62289600	omp2b	BruAb1_0657	-	Omp2b, porin
610	 53.74	0	655218..655859	+	213	62289601	-	BruAb1_0658	-	hypothetical protein
611	 48.26	-2	655909..656109	-	66	62289602	-	BruAb1_0659	-	hypothetical protein
612	 57.63	0	656158..656832	+	224	62289603	-	BruAb1_0660	-	hypothetical protein
613	 59.82	0	656895..658952	-	685	62289604	-	BruAb1_0661	-	transglycosylase SLT domain-containing protein
614	 44.09	-2	659123..659215	+	30	62289605	-	BruAb1_0662	-	hypothetical protein
615	 56.92	0	659428..660309	+	293	62289606	dapA	BruAb1_0663	-	dihydrodipicolinate synthase
616	 55.77	0	660400..660876	+	158	62289607	smpB	BruAb1_0664	-	SsrA-binding protein
617	 58.18	0	661112..661783	-	223	62289608	-	BruAb1_0665	-	SPO1 DNA polymerase-related protein
618	 54.34	0	661814..662389	-	191	62289609	-	BruAb1_0666	-	hypothetical protein
619	 35.26	-2	662589..662744	-	51	62289610	-	BruAb1_0667	-	hypothetical protein
620	 56.22	0	662786..663187	+	133	62289611	rpoZ	BruAb1_0668	-	DNA-directed RNA polymerase subunit omega
621	 57.97	0	663428..665680	+	750	62289612	-	BruAb1_0669	-	RelA/SpoT family protein
622	 60.45	0	665688..666266	+	192	62289613	pyrE	BruAb1_0670	-	orotate phosphoribosyltransferase
623	 56.49	0	666435..667181	+	248	62289614	-	BruAb1_0671	-	Crp/FNR family transcriptional regulator
624	 57.23	0	667562..668896	+	444	62289615	hemN-1	BruAb1_0672	-	coproporphyrinogen III oxidase
625	 59.24	0	669080..670291	-	403	62289616	fsr	BruAb1_0673	-	Fsr, fosmidomycin resistance protein
626	 58.57	0	670543..671382	+	279	62289617	-	BruAb1_0674	-	AraC family transcriptional regulator
627	 61.11	0	671432..672007	+	191	62289618	-	BruAb1_0675	-	hypothetical protein
628	 54.81	0	672004..672408	+	134	62289619	acpS	BruAb1_0676	-	4'-phosphopantetheinyl transferase
629	 56.58	0	672519..673301	+	260	62289620	-	BruAb1_0677	-	signal peptidase I
630	 58.81	0	673270..674007	+	245	62289621	rncS	BruAb1_0678	-	ribonuclease III
631	 55.56	0	674050..674148	+	32	62289622	-	BruAb1_0679	-	hypothetical protein
632	 57.59	0	674152..675087	+	311	62289623	era	BruAb1_0680	-	GTP-binding protein Era
633	 59.01	0	675114..675857	+	247	62289624	recO	BruAb1_0681	-	DNA repair protein RecO
634	 62.16	+1	675835..676344	-	169	62289625	-	BruAb1_0682	-	hypothetical protein
635	 59.74	0	676341..676961	-	206	62289626	-	BruAb1_0683	-	hypothetical protein
636	 57.75	0	676961..677824	-	287	62289627	-	BruAb1_0684	-	aminomethyltransferase
637	 59.70	0	677910..679244	+	444	62289628	pyrC-1	BruAb1_0685	-	dihydroorotase
638	 58.69	0	679293..680057	-	254	62289629	-	BruAb1_0686	-	hypothetical protein
639	 51.31	-1	680106..680372	-	88	62289630	-	BruAb1_0687	-	hypothetical protein
640	 55.73	0	680529..680912	-	127	62289631	-	BruAb1_0688	-	hypothetical protein
641	 58.33	0	680992..681435	-	147	62289632	-	BruAb1_0689	-	MutT/nudix family protein
642	 60.51	0	681521..682300	+	259	62289633	-	BruAb1_0690	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.