IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
467	 59.78	0	496760..497224	+	154	62289458	rnhA	BruAb1_0499	-	ribonuclease H
468	 58.85	0	497254..497739	-	161	62289459	-	BruAb1_0500	-	ahpC/TSA family protein
469	 59.55	0	497919..498719	-	266	62289460	-	BruAb1_0501	-	hypothetical protein
470	 58.87	0	498854..499456	+	200	62289461	-	BruAb1_0502	-	hypothetical protein
471	 60.14	0	499578..502472	-	964	62289462	-	BruAb1_0503	-	sensory box protein
472	 55.72	0	502469..503089	-	206	62289463	-	BruAb1_0504	-	acetyltransferase
473	 59.16	0	503260..504552	-	430	62289464	-	BruAb1_0505	-	processing protease
474	 58.76	0	504606..505997	-	463	62289465	thrC	BruAb1_0506	-	threonine synthase
475	 48.39	-2	506077..506169	-	30	62289466	-	BruAb1_0507	-	hypothetical protein
476	 55.27	0	506359..506937	+	192	62289467	-	BruAb1_0508	-	lipoprotein
477	 56.27	0	507251..508885	+	544	62289468	-	BruAb1_0509	-	EAL domain-containing protein
478	 56.99	0	509014..509199	+	61	62289469	-	BruAb1_0510	-	hypothetical protein
479	 59.97	0	509241..509927	-	228	62289470	-	BruAb1_0511	-	HAD superfamily hydrolase
480	 61.69	+1	510075..511781	-	568	62289471	-	BruAb1_0512	-	voltage gated chloride channel family protein
481	 59.96	0	512118..513251	+	377	62289472	babI	BruAb1_0513	-	BabI, modification methylase BabI
482	 57.61	0	513334..513951	-	205	62289473	-	BruAb1_0514	-	HAD superfamily hydrolase
483	 61.10	0	513948..515024	-	358	62289474	mutY	BruAb1_0515	-	MutY, A/G-specific adenine glycosylase
484	 60.98	0	515298..515825	+	175	62289475	-	BruAb1_0516	-	hypothetical protein
485	 52.87	-1	515843..516016	+	57	62289476	-	BruAb1_0517	-	hypothetical protein
486	 54.28	0	516063..516716	+	217	62289477	-	BruAb1_0518	-	twin-arginine translocation pathway signal sequence domain-containing protein
487	 63.49	+1	516795..520253	+	1152	62289478	-	BruAb1_0519	-	SMC family protein
488	 57.02	0	521262..521603	-	113	62289479	-	BruAb1_0521	-	glyoxalase family protein
489	 60.85	0	521867..524530	+	887	62289480	ppdK	BruAb1_0522	-	pyruvate phosphate dikinase
490	 57.26	0	524744..525562	+	272	62289481	-	BruAb1_0523	-	hypothetical protein
491	 57.88	0	525857..526243	-	128	62289482	-	BruAb1_0525	-	hypothetical protein
492	 59.82	0	526527..527315	+	262	62289483	-	BruAb1_0526	-	hypothetical protein
493	 61.26	0	527316..528221	-	301	62289484	-	BruAb1_0527	-	metallo-beta-lactamase family protein
494	 59.50	0	528422..529021	+	199	62289485	-	BruAb1_0528	-	BioY family protein
495	 55.88	0	529157..529666	+	169	62289486	-	BruAb1_0529	-	ureidoglycolate hydrolase
496	 58.26	0	529678..530034	+	118	62289487	-	BruAb1_0530	-	hypothetical protein
497	 57.95	0	530105..530941	+	278	62289488	-	BruAb1_0531	-	hypothetical protein
498	 56.66	0	531478..533346	+	622	62289489	-	BruAb1_0532	-	epimerase/dehydratase
499	 56.05	0	533333..534340	-	335	62289490	-	BruAb1_0533	-	glycosyl transferase, group 4 family protein
500	 58.84	0	535549..536136	+	195	62289491	-	BruAb1_0535	-	P1 ISBm3
501	 56.00	0	536121..536420	+	99	62289492	-	BruAb1_0536	-	transposase
502	 56.44	0	536932..537156	+	74	62289493	-	BruAb1_0538	-	P1 ISBm2
503	 45.13	-2	538209..538988	-	259	62289494	-	BruAb1_0540	-	formyltransferase
504	 44.56	-2	539015..539869	-	284	62289495	wbkB	BruAb1_0541	-	WbkB protein
505	 49.01	-1	539866..540624	-	252	62289496	rfbE	BruAb1_0542	-	RfbE, O-antigen export system ATP-binding protein RfbE
506	 45.98	-2	540621..541403	-	260	62289497	rfbD	BruAb1_0543	-	RfbD, O-antigen export system permease protein
507	 47.28	-2	541418..542521	-	367	62289498	-	BruAb1_0544	-	perosamine synthase
508	 47.93	-2	542529..543617	-	362	62289499	gmd	BruAb1_0545	-	Gmd, GDP-mannose 4,6-dehydratase
509	 60.37	0	544136..544564	+	142	62289500	-	BruAb1_0546	-	ISBm1, transposase orfA
510	 58.71	0	544456..544857	+	133	62289501	-	BruAb1_0547	-	ISBml, transposase orfB
511	 58.33	0	545772..546083	+	103	62289502	-	BruAb1_0549	-	IS711, transposase orfA
512	 52.05	-1	546070..546507	+	145	62289503	-	BruAb1_0550	-	IS711, transposase orfB
513	 54.58	0	546508..546747	+	79	62289504	-	BruAb1_0551	-	ISBm1 ORFC
514	 43.79	-2	546878..547996	+	372	62289505	-	BruAb1_0552	-	mannosyltransferase
515	 57.18	0	548054..548422	+	122	62289506	-	BruAb1_0553	-	IS5 family transposase OrfA
516	 59.21	0	549666..550094	+	142	62289507	-	BruAb1_0556	-	transposase orfA
517	 57.43	0	549986..550429	+	147	62289508	-	BruAb1_0557	-	transposase orfB
518	 50.81	-1	551254..552609	+	451	62289509	-	BruAb1_0560	-	phosphomannomutase
519	 51.16	-1	552680..554104	+	474	62289510	-	BruAb1_0561	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
520	 51.24	-1	554137..555309	+	390	62289511	manA	BruAb1_0562	-	ManA, mannose-6-phosphate isomerase
521	 51.17	-1	555392..556501	+	369	62289512	-	BruAb1_0563	-	glycosyl transferase
522	 56.90	0	557193..558728	+	511	62289513	rbsA-1	BruAb1_0564	-	RbsA-1, ribose ABC transporter
523	 56.89	0	558749..559750	+	333	62289514	rbsC-1	BruAb1_0565	-	RbsC-1, ribose ABC transporter
524	 57.11	0	559829..560791	+	320	62289515	rbsB-1	BruAb1_0566	-	RbsB-1, ribose ABC transporter
525	 57.74	0	560849..561901	+	350	62289516	-	BruAb1_0567	-	hypothetical protein
526	 59.02	0	561909..563006	+	365	62289517	-	BruAb1_0568	-	oxidoreductase
527	 56.27	0	563048..564355	-	435	62289518	xylA	BruAb1_0569	-	xylose isomerase
528	 61.78	+1	564402..565853	-	483	62289519	xylB	BruAb1_0570	-	XylB, xylulokinase
529	 59.21	0	565886..566917	-	343	62289520	-	BruAb1_0571	-	transcriptional regulator
530	 51.85	-1	568544..568651	-	35	62289521	-	BruAb1_0573	-	hypothetical protein
531	 58.81	0	568711..570174	-	487	62289522	betB	BruAb1_0574	-	betaine aldehyde dehydrogenase
532	 58.46	0	572011..572607	-	198	62289523	betI	BruAb1_0576	-	transcriptional regulator BetI
533	 60.70	0	572798..573820	+	340	62289524	-	BruAb1_0577	-	hypothetical protein
534	 58.81	0	573865..574335	+	156	62289525	-	BruAb1_0578	-	transcription elongation factor
535	 50.00	-1	574332..574721	-	129	62289526	-	BruAb1_0579	-	death-on-curing family protein
536	 51.08	-1	574718..574948	-	76	62289527	-	BruAb1_0580	-	AbrB family transcriptional regulator
537	 55.79	0	575009..576001	-	330	62289528	-	BruAb1_0581	-	transporter
538	 60.47	0	576157..576834	+	225	62289529	-	BruAb1_0582	-	GntR family transcriptional regulator
539	 60.06	0	578166..578528	-	120	62289530	-	BruAb1_0584	-	hypothetical protein
540	 59.59	0	578864..580375	+	503	62289531	-	BruAb1_0585	-	hypothetical protein
541	 60.67	0	580565..581281	-	238	62289532	-	BruAb1_0586	-	hypothetical protein
542	 58.26	0	581584..582237	-	217	62289533	-	BruAb1_0587	-	haloacid dehalogenase
543	 53.83	0	582460..583059	+	199	62289534	-	BruAb1_0588	-	Fe-Mn superoxide dismutase
544	 55.88	0	583069..583680	+	203	62289535	-	BruAb1_0589	-	hypothetical protein
545	 57.75	0	583684..585792	-	702	62289536	ptrB	BruAb1_0590	-	PtrB, protease
546	 54.31	0	586365..586793	+	142	62289537	-	BruAb1_0591	-	transcriptional regulator
547	 54.22	0	587001..587249	-	82	62289538	-	BruAb1_0592	-	hypothetical protein
548	 57.02	0	587493..587948	+	151	62289539	-	BruAb1_0593	-	hypothetical protein
549	 60.31	0	588095..588739	+	214	62289540	-	BruAb1_0594	-	hypothetical protein
550	 60.21	0	588850..590166	+	438	62289541	-	BruAb1_0595	-	amidase
551	 59.62	0	590207..590632	-	141	62289542	-	BruAb1_0596	-	hypothetical protein
552	 56.44	0	590712..591161	-	149	62289543	-	BruAb1_0597	-	hypothetical protein
553	 59.29	0	591452..593281	+	609	62289544	-	BruAb1_0598	-	sensor histidine kinase
554	 60.58	0	593256..594224	+	322	62289545	-	BruAb1_0599	-	peptidoglycan-binding protein
555	 56.90	0	594238..594585	+	115	62289546	-	BruAb1_0600	-	hypothetical protein
556	 58.50	0	594596..595672	-	358	62289547	-	BruAb1_0601	-	hypothetical protein
557	 54.88	0	595870..596412	-	180	62289548	-	BruAb1_0602	-	hypothetical protein
558	 62.91	+1	596405..597016	-	203	62289549	-	BruAb1_0603	-	hypothetical protein
559	 59.25	0	597023..599179	-	718	62289550	-	BruAb1_0604	-	penicillin-binding protein
560	 59.33	0	599600..600049	+	149	62289551	-	BruAb1_0605	-	hypothetical protein
561	 64.83	+1	600093..601235	+	380	62289552	-	BruAb1_0606	-	terminase large subunit
562	 62.06	+1	601267..602460	+	397	62289553	-	BruAb1_0607	-	portal protein
563	 61.38	+1	602457..602834	+	125	62289554	-	BruAb1_0608	-	hypothetical protein
564	 62.93	+1	602821..603489	+	222	62289555	-	BruAb1_0609	-	protease
565	 59.92	0	603511..604785	+	424	62289556	-	BruAb1_0610	-	major capsid protein
566	 58.91	0	604950..605516	+	188	62289557	-	BruAb1_0611	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.