IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
440	 59.26	0	467895..469352	-	485	62289431	purF	BruAb1_0468	-	amidophosphoribosyltransferase
441	 48.99	-1	469374..469571	+	65	62289432	-	BruAb1_0469	-	hypothetical protein
442	 58.38	0	469667..470245	-	192	62289433	-	BruAb1_0470	-	colicin V production protein
443	 62.46	+1	470371..471774	-	467	62289434	radA	BruAb1_0471	-	DNA repair protein RadA
444	 58.57	0	471802..473307	-	501	62289435	dnaB	BruAb1_0472	-	replicative DNA helicase
445	 55.97	0	473506..474786	-	426	62289436	cfa	BruAb1_0473	-	Cfa, cyclopropane-fatty-acyl-phospholipid synthase
446	 58.25	0	475160..475729	-	189	62289437	rplI	BruAb1_0474	-	50S ribosomal protein L9
447	 62.28	+1	475759..476715	-	318	62289438	-	BruAb1_0475	-	hypothetical protein
448	 58.63	0	476866..477114	-	82	62289439	rpsR	BruAb1_0476	-	30S ribosomal protein S18
449	 61.52	+1	477117..477563	-	148	62289440	rpsF	BruAb1_0477	-	30S ribosomal protein S6
450	 54.72	0	477588..477947	-	119	62289441	-	BruAb1_0478	-	hypothetical protein
451	 61.48	+1	477969..478913	+	314	62289442	fabD	BruAb1_0479	-	acyl-carrier-protein S-malonyltransferase
452	 59.08	0	478983..479720	+	245	62289443	fabG	BruAb1_0480	-	3-ketoacyl-(acyl-carrier-protein) reductase
453	 53.59	0	479994..480230	+	78	62289444	acpP	BruAb1_0481	-	acyl carrier protein
454	 57.95	0	480234..480497	+	87	62289445	-	BruAb1_0482	-	hypothetical protein
455	 62.07	+1	480554..481816	+	420	62289446	fabF	BruAb1_0483	-	3-oxoacyl-(acyl carrier protein) synthase II
456	 59.00	0	482041..483279	+	412	62289447	-	BruAb1_0484	-	hypothetical protein
457	 61.44	+1	483464..484363	+	299	62289448	-	BruAb1_0485	-	hypothetical protein
458	 57.77	0	484372..485034	+	220	62289449	gmk	BruAb1_0486	-	guanylate kinase
459	 61.15	0	485061..486473	-	470	62289450	-	BruAb1_0487	-	hypothetical protein
460	 64.15	+1	486614..487210	-	198	62289451	-	BruAb1_0488	-	hypothetical protein
461	 58.25	0	487674..488528	+	284	62289452	coxB	BruAb1_0489	-	CoxB, cytochrome c oxidase, subunit II
462	 59.86	0	488666..490324	+	552	62289453	coxA	BruAb1_0490	-	CoxA, cytochrome c oxidase, subunit I
463	 57.79	0	492502..493380	+	292	62289454	coxC	BruAb1_0494	-	CoxC, cytochrome c oxidase, subunit III
464	 60.13	0	493879..494628	+	249	62289455	-	BruAb1_0496	-	SurF1 family protein
465	 57.91	0	494659..495777	+	372	62289456	ispH	BruAb1_0497	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
466	 58.72	0	495783..496763	+	326	62289457	thrB	BruAb1_0498	-	homoserine kinase
467	 59.78	0	496760..497224	+	154	62289458	rnhA	BruAb1_0499	-	ribonuclease H
468	 58.85	0	497254..497739	-	161	62289459	-	BruAb1_0500	-	ahpC/TSA family protein
469	 59.55	0	497919..498719	-	266	62289460	-	BruAb1_0501	-	hypothetical protein
470	 58.87	0	498854..499456	+	200	62289461	-	BruAb1_0502	-	hypothetical protein
471	 60.14	0	499578..502472	-	964	62289462	-	BruAb1_0503	-	sensory box protein
472	 55.72	0	502469..503089	-	206	62289463	-	BruAb1_0504	-	acetyltransferase
473	 59.16	0	503260..504552	-	430	62289464	-	BruAb1_0505	-	processing protease
474	 58.76	0	504606..505997	-	463	62289465	thrC	BruAb1_0506	-	threonine synthase
475	 48.39	-2	506077..506169	-	30	62289466	-	BruAb1_0507	-	hypothetical protein
476	 55.27	0	506359..506937	+	192	62289467	-	BruAb1_0508	-	lipoprotein
477	 56.27	0	507251..508885	+	544	62289468	-	BruAb1_0509	-	EAL domain-containing protein
478	 56.99	0	509014..509199	+	61	62289469	-	BruAb1_0510	-	hypothetical protein
479	 59.97	0	509241..509927	-	228	62289470	-	BruAb1_0511	-	HAD superfamily hydrolase
480	 61.69	+1	510075..511781	-	568	62289471	-	BruAb1_0512	-	voltage gated chloride channel family protein
481	 59.96	0	512118..513251	+	377	62289472	babI	BruAb1_0513	-	BabI, modification methylase BabI
482	 57.61	0	513334..513951	-	205	62289473	-	BruAb1_0514	-	HAD superfamily hydrolase
483	 61.10	0	513948..515024	-	358	62289474	mutY	BruAb1_0515	-	MutY, A/G-specific adenine glycosylase
484	 60.98	0	515298..515825	+	175	62289475	-	BruAb1_0516	-	hypothetical protein
485	 52.87	-1	515843..516016	+	57	62289476	-	BruAb1_0517	-	hypothetical protein
486	 54.28	0	516063..516716	+	217	62289477	-	BruAb1_0518	-	twin-arginine translocation pathway signal sequence domain-containing protein
487	 63.49	+1	516795..520253	+	1152	62289478	-	BruAb1_0519	-	SMC family protein
488	 57.02	0	521262..521603	-	113	62289479	-	BruAb1_0521	-	glyoxalase family protein
489	 60.85	0	521867..524530	+	887	62289480	ppdK	BruAb1_0522	-	pyruvate phosphate dikinase
490	 57.26	0	524744..525562	+	272	62289481	-	BruAb1_0523	-	hypothetical protein
491	 57.88	0	525857..526243	-	128	62289482	-	BruAb1_0525	-	hypothetical protein
492	 59.82	0	526527..527315	+	262	62289483	-	BruAb1_0526	-	hypothetical protein
493	 61.26	0	527316..528221	-	301	62289484	-	BruAb1_0527	-	metallo-beta-lactamase family protein
494	 59.50	0	528422..529021	+	199	62289485	-	BruAb1_0528	-	BioY family protein
495	 55.88	0	529157..529666	+	169	62289486	-	BruAb1_0529	-	ureidoglycolate hydrolase
496	 58.26	0	529678..530034	+	118	62289487	-	BruAb1_0530	-	hypothetical protein
497	 57.95	0	530105..530941	+	278	62289488	-	BruAb1_0531	-	hypothetical protein
498	 56.66	0	531478..533346	+	622	62289489	-	BruAb1_0532	-	epimerase/dehydratase
499	 56.05	0	533333..534340	-	335	62289490	-	BruAb1_0533	-	glycosyl transferase, group 4 family protein
500	 58.84	0	535549..536136	+	195	62289491	-	BruAb1_0535	-	P1 ISBm3
501	 56.00	0	536121..536420	+	99	62289492	-	BruAb1_0536	-	transposase
502	 56.44	0	536932..537156	+	74	62289493	-	BruAb1_0538	-	P1 ISBm2
503	 45.13	-2	538209..538988	-	259	62289494	-	BruAb1_0540	-	formyltransferase
504	 44.56	-2	539015..539869	-	284	62289495	wbkB	BruAb1_0541	-	WbkB protein
505	 49.01	-1	539866..540624	-	252	62289496	rfbE	BruAb1_0542	-	RfbE, O-antigen export system ATP-binding protein RfbE
506	 45.98	-2	540621..541403	-	260	62289497	rfbD	BruAb1_0543	-	RfbD, O-antigen export system permease protein
507	 47.28	-2	541418..542521	-	367	62289498	-	BruAb1_0544	-	perosamine synthase
508	 47.93	-2	542529..543617	-	362	62289499	gmd	BruAb1_0545	-	Gmd, GDP-mannose 4,6-dehydratase
509	 60.37	0	544136..544564	+	142	62289500	-	BruAb1_0546	-	ISBm1, transposase orfA
510	 58.71	0	544456..544857	+	133	62289501	-	BruAb1_0547	-	ISBml, transposase orfB
511	 58.33	0	545772..546083	+	103	62289502	-	BruAb1_0549	-	IS711, transposase orfA
512	 52.05	-1	546070..546507	+	145	62289503	-	BruAb1_0550	-	IS711, transposase orfB
513	 54.58	0	546508..546747	+	79	62289504	-	BruAb1_0551	-	ISBm1 ORFC
514	 43.79	-2	546878..547996	+	372	62289505	-	BruAb1_0552	-	mannosyltransferase
515	 57.18	0	548054..548422	+	122	62289506	-	BruAb1_0553	-	IS5 family transposase OrfA
516	 59.21	0	549666..550094	+	142	62289507	-	BruAb1_0556	-	transposase orfA
517	 57.43	0	549986..550429	+	147	62289508	-	BruAb1_0557	-	transposase orfB
518	 50.81	-1	551254..552609	+	451	62289509	-	BruAb1_0560	-	phosphomannomutase
519	 51.16	-1	552680..554104	+	474	62289510	-	BruAb1_0561	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
520	 51.24	-1	554137..555309	+	390	62289511	manA	BruAb1_0562	-	ManA, mannose-6-phosphate isomerase
521	 51.17	-1	555392..556501	+	369	62289512	-	BruAb1_0563	-	glycosyl transferase
522	 56.90	0	557193..558728	+	511	62289513	rbsA-1	BruAb1_0564	-	RbsA-1, ribose ABC transporter
523	 56.89	0	558749..559750	+	333	62289514	rbsC-1	BruAb1_0565	-	RbsC-1, ribose ABC transporter
524	 57.11	0	559829..560791	+	320	62289515	rbsB-1	BruAb1_0566	-	RbsB-1, ribose ABC transporter
525	 57.74	0	560849..561901	+	350	62289516	-	BruAb1_0567	-	hypothetical protein
526	 59.02	0	561909..563006	+	365	62289517	-	BruAb1_0568	-	oxidoreductase
527	 56.27	0	563048..564355	-	435	62289518	xylA	BruAb1_0569	-	xylose isomerase
528	 61.78	+1	564402..565853	-	483	62289519	xylB	BruAb1_0570	-	XylB, xylulokinase
529	 59.21	0	565886..566917	-	343	62289520	-	BruAb1_0571	-	transcriptional regulator
530	 51.85	-1	568544..568651	-	35	62289521	-	BruAb1_0573	-	hypothetical protein
531	 58.81	0	568711..570174	-	487	62289522	betB	BruAb1_0574	-	betaine aldehyde dehydrogenase
532	 58.46	0	572011..572607	-	198	62289523	betI	BruAb1_0576	-	transcriptional regulator BetI
533	 60.70	0	572798..573820	+	340	62289524	-	BruAb1_0577	-	hypothetical protein
534	 58.81	0	573865..574335	+	156	62289525	-	BruAb1_0578	-	transcription elongation factor
535	 50.00	-1	574332..574721	-	129	62289526	-	BruAb1_0579	-	death-on-curing family protein
536	 51.08	-1	574718..574948	-	76	62289527	-	BruAb1_0580	-	AbrB family transcriptional regulator
537	 55.79	0	575009..576001	-	330	62289528	-	BruAb1_0581	-	transporter
538	 60.47	0	576157..576834	+	225	62289529	-	BruAb1_0582	-	GntR family transcriptional regulator
539	 60.06	0	578166..578528	-	120	62289530	-	BruAb1_0584	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.