IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
412	 59.49	0	443298..443924	-	208	62289403	pdxH	BruAb1_0439	-	pyridoxamine 5'-phosphate oxidase
413	 56.26	0	444183..444653	+	156	62289404	-	BruAb1_0440	-	hypothetical protein
414	 60.19	0	444798..445739	+	313	62289405	-	BruAb1_0441	-	chaperone protein DnaJ
415	 48.15	-2	445743..445850	-	35	62289406	-	BruAb1_0442	-	hypothetical protein
416	 56.78	0	445883..446701	+	272	62289407	fabI-1	BruAb1_0443	-	enoyl-(acyl carrier protein) reductase
417	 58.71	0	446816..447406	+	196	62289408	-	BruAb1_0444	-	phosphoglycerate mutase family protein
418	 53.33	0	447668..447877	+	69	62289409	-	BruAb1_0445	-	cold-shock family protein
419	 49.33	-1	447975..448124	-	49	62289410	-	BruAb1_0446	-	hypothetical protein
420	 55.87	0	448347..448559	+	70	62289411	-	BruAb1_0447	-	hypothetical protein
421	 60.78	0	448654..449316	+	220	62289412	-	BruAb1_0448	-	hypothetical protein
422	 50.00	-1	449461..449712	-	83	62289413	-	BruAb1_0449	-	hypothetical protein
423	 60.82	0	449987..451081	+	364	62289414	aroC	BruAb1_0450	-	chorismate synthase
424	 57.30	0	452485..453498	+	337	62289415	-	BruAb1_0452	-	histone deacetylase family protein
425	 56.86	0	453503..453757	+	84	62289416	xseB	BruAb1_0453	-	exodeoxyribonuclease VII small subunit
426	 57.61	0	453764..454282	-	172	62289417	-	BruAb1_0454	-	dedA family protein
427	 52.87	-1	454524..454784	-	86	62289418	-	BruAb1_0455	-	transglycosylase-associated protein
428	 63.77	+1	454947..455498	+	183	62289419	-	BruAb1_0456	-	hypothetical protein
429	 60.94	0	455702..456574	+	290	62289420	-	BruAb1_0457	-	pirin-related protein
430	 62.01	+1	456717..458648	+	643	62289421	dxs	BruAb1_0458	-	1-deoxy-D-xylulose-5-phosphate synthase
431	 61.81	+1	458654..459415	+	253	62289422	tlyA	BruAb1_0459	-	TlyA, hemolysin A
432	 63.62	+1	459412..460659	+	415	62289423	-	BruAb1_0460	-	RNA methyltransferase
433	 57.71	0	460771..461373	-	200	62289424	-	BruAb1_0461	-	hypothetical protein
434	 51.64	-1	461503..461868	+	121	62289425	-	BruAb1_0462	-	hypothetical protein
435	 61.98	+1	462055..463269	+	404	62289426	-	BruAb1_0463	-	LysM domain-containing protein
436	 58.24	0	463471..465357	+	628	62289427	-	BruAb1_0464	-	ABC transporter, ATP-binding/permease protein
437	 59.51	0	465462..466160	+	232	62289428	-	BruAb1_0465	-	phosphatidylserine decarboxylase
438	 59.26	0	466165..467001	+	278	62289429	pssA	BruAb1_0466	-	PssA, CDP-diacylglycerol--serine O-phosphatidyltransferase
439	 61.00	0	467086..467826	-	246	62289430	-	BruAb1_0467	-	short chain dehydrogenase/reductase family oxidoreductase
440	 59.26	0	467895..469352	-	485	62289431	purF	BruAb1_0468	-	amidophosphoribosyltransferase
441	 48.99	-1	469374..469571	+	65	62289432	-	BruAb1_0469	-	hypothetical protein
442	 58.38	0	469667..470245	-	192	62289433	-	BruAb1_0470	-	colicin V production protein
443	 62.46	+1	470371..471774	-	467	62289434	radA	BruAb1_0471	-	DNA repair protein RadA
444	 58.57	0	471802..473307	-	501	62289435	dnaB	BruAb1_0472	-	replicative DNA helicase
445	 55.97	0	473506..474786	-	426	62289436	cfa	BruAb1_0473	-	Cfa, cyclopropane-fatty-acyl-phospholipid synthase
446	 58.25	0	475160..475729	-	189	62289437	rplI	BruAb1_0474	-	50S ribosomal protein L9
447	 62.28	+1	475759..476715	-	318	62289438	-	BruAb1_0475	-	hypothetical protein
448	 58.63	0	476866..477114	-	82	62289439	rpsR	BruAb1_0476	-	30S ribosomal protein S18
449	 61.52	+1	477117..477563	-	148	62289440	rpsF	BruAb1_0477	-	30S ribosomal protein S6
450	 54.72	0	477588..477947	-	119	62289441	-	BruAb1_0478	-	hypothetical protein
451	 61.48	+1	477969..478913	+	314	62289442	fabD	BruAb1_0479	-	acyl-carrier-protein S-malonyltransferase
452	 59.08	0	478983..479720	+	245	62289443	fabG	BruAb1_0480	-	3-ketoacyl-(acyl-carrier-protein) reductase
453	 53.59	0	479994..480230	+	78	62289444	acpP	BruAb1_0481	-	acyl carrier protein
454	 57.95	0	480234..480497	+	87	62289445	-	BruAb1_0482	-	hypothetical protein
455	 62.07	+1	480554..481816	+	420	62289446	fabF	BruAb1_0483	-	3-oxoacyl-(acyl carrier protein) synthase II
456	 59.00	0	482041..483279	+	412	62289447	-	BruAb1_0484	-	hypothetical protein
457	 61.44	+1	483464..484363	+	299	62289448	-	BruAb1_0485	-	hypothetical protein
458	 57.77	0	484372..485034	+	220	62289449	gmk	BruAb1_0486	-	guanylate kinase
459	 61.15	0	485061..486473	-	470	62289450	-	BruAb1_0487	-	hypothetical protein
460	 64.15	+1	486614..487210	-	198	62289451	-	BruAb1_0488	-	hypothetical protein
461	 58.25	0	487674..488528	+	284	62289452	coxB	BruAb1_0489	-	CoxB, cytochrome c oxidase, subunit II
462	 59.86	0	488666..490324	+	552	62289453	coxA	BruAb1_0490	-	CoxA, cytochrome c oxidase, subunit I
463	 57.79	0	492502..493380	+	292	62289454	coxC	BruAb1_0494	-	CoxC, cytochrome c oxidase, subunit III
464	 60.13	0	493879..494628	+	249	62289455	-	BruAb1_0496	-	SurF1 family protein
465	 57.91	0	494659..495777	+	372	62289456	ispH	BruAb1_0497	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
466	 58.72	0	495783..496763	+	326	62289457	thrB	BruAb1_0498	-	homoserine kinase
467	 59.78	0	496760..497224	+	154	62289458	rnhA	BruAb1_0499	-	ribonuclease H
468	 58.85	0	497254..497739	-	161	62289459	-	BruAb1_0500	-	ahpC/TSA family protein
469	 59.55	0	497919..498719	-	266	62289460	-	BruAb1_0501	-	hypothetical protein
470	 58.87	0	498854..499456	+	200	62289461	-	BruAb1_0502	-	hypothetical protein
471	 60.14	0	499578..502472	-	964	62289462	-	BruAb1_0503	-	sensory box protein
472	 55.72	0	502469..503089	-	206	62289463	-	BruAb1_0504	-	acetyltransferase
473	 59.16	0	503260..504552	-	430	62289464	-	BruAb1_0505	-	processing protease
474	 58.76	0	504606..505997	-	463	62289465	thrC	BruAb1_0506	-	threonine synthase
475	 48.39	-2	506077..506169	-	30	62289466	-	BruAb1_0507	-	hypothetical protein
476	 55.27	0	506359..506937	+	192	62289467	-	BruAb1_0508	-	lipoprotein
477	 56.27	0	507251..508885	+	544	62289468	-	BruAb1_0509	-	EAL domain-containing protein
478	 56.99	0	509014..509199	+	61	62289469	-	BruAb1_0510	-	hypothetical protein
479	 59.97	0	509241..509927	-	228	62289470	-	BruAb1_0511	-	HAD superfamily hydrolase
480	 61.69	+1	510075..511781	-	568	62289471	-	BruAb1_0512	-	voltage gated chloride channel family protein
481	 59.96	0	512118..513251	+	377	62289472	babI	BruAb1_0513	-	BabI, modification methylase BabI
482	 57.61	0	513334..513951	-	205	62289473	-	BruAb1_0514	-	HAD superfamily hydrolase
483	 61.10	0	513948..515024	-	358	62289474	mutY	BruAb1_0515	-	MutY, A/G-specific adenine glycosylase
484	 60.98	0	515298..515825	+	175	62289475	-	BruAb1_0516	-	hypothetical protein
485	 52.87	-1	515843..516016	+	57	62289476	-	BruAb1_0517	-	hypothetical protein
486	 54.28	0	516063..516716	+	217	62289477	-	BruAb1_0518	-	twin-arginine translocation pathway signal sequence domain-containing protein
487	 63.49	+1	516795..520253	+	1152	62289478	-	BruAb1_0519	-	SMC family protein
488	 57.02	0	521262..521603	-	113	62289479	-	BruAb1_0521	-	glyoxalase family protein
489	 60.85	0	521867..524530	+	887	62289480	ppdK	BruAb1_0522	-	pyruvate phosphate dikinase
490	 57.26	0	524744..525562	+	272	62289481	-	BruAb1_0523	-	hypothetical protein
491	 57.88	0	525857..526243	-	128	62289482	-	BruAb1_0525	-	hypothetical protein
492	 59.82	0	526527..527315	+	262	62289483	-	BruAb1_0526	-	hypothetical protein
493	 61.26	0	527316..528221	-	301	62289484	-	BruAb1_0527	-	metallo-beta-lactamase family protein
494	 59.50	0	528422..529021	+	199	62289485	-	BruAb1_0528	-	BioY family protein
495	 55.88	0	529157..529666	+	169	62289486	-	BruAb1_0529	-	ureidoglycolate hydrolase
496	 58.26	0	529678..530034	+	118	62289487	-	BruAb1_0530	-	hypothetical protein
497	 57.95	0	530105..530941	+	278	62289488	-	BruAb1_0531	-	hypothetical protein
498	 56.66	0	531478..533346	+	622	62289489	-	BruAb1_0532	-	epimerase/dehydratase
499	 56.05	0	533333..534340	-	335	62289490	-	BruAb1_0533	-	glycosyl transferase, group 4 family protein
500	 58.84	0	535549..536136	+	195	62289491	-	BruAb1_0535	-	P1 ISBm3
501	 56.00	0	536121..536420	+	99	62289492	-	BruAb1_0536	-	transposase
502	 56.44	0	536932..537156	+	74	62289493	-	BruAb1_0538	-	P1 ISBm2
503	 45.13	-2	538209..538988	-	259	62289494	-	BruAb1_0540	-	formyltransferase
504	 44.56	-2	539015..539869	-	284	62289495	wbkB	BruAb1_0541	-	WbkB protein
505	 49.01	-1	539866..540624	-	252	62289496	rfbE	BruAb1_0542	-	RfbE, O-antigen export system ATP-binding protein RfbE
506	 45.98	-2	540621..541403	-	260	62289497	rfbD	BruAb1_0543	-	RfbD, O-antigen export system permease protein
507	 47.28	-2	541418..542521	-	367	62289498	-	BruAb1_0544	-	perosamine synthase
508	 47.93	-2	542529..543617	-	362	62289499	gmd	BruAb1_0545	-	Gmd, GDP-mannose 4,6-dehydratase
509	 60.37	0	544136..544564	+	142	62289500	-	BruAb1_0546	-	ISBm1, transposase orfA
510	 58.71	0	544456..544857	+	133	62289501	-	BruAb1_0547	-	ISBml, transposase orfB
511	 58.33	0	545772..546083	+	103	62289502	-	BruAb1_0549	-	IS711, transposase orfA
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.