IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
372	 55.93	0	405680..406927	+	415	62289363	bacA	BruAb1_0398	-	transport protein
373	 60.06	0	406966..407964	-	332	62289364	-	BruAb1_0399	-	hypothetical protein
374	 62.50	+1	408210..408881	+	223	62289365	-	BruAb1_0400	-	hypothetical protein
375	 61.57	+1	408903..410354	+	483	62289366	engA	BruAb1_0401	-	GTP-binding protein EngA
376	 57.02	0	410513..411829	+	438	62289367	-	BruAb1_0402	-	HSP70 family protein
377	 52.38	-1	411918..412043	-	41	62289368	-	BruAb1_0403	-	hypothetical protein
378	 60.39	0	412265..413554	+	429	62289369	-	BruAb1_0404	-	hypothetical protein
379	 53.33	0	413582..413686	+	34	62289370	-	BruAb1_0405	-	hypothetical protein
380	 56.14	0	413825..414223	+	132	62289371	-	BruAb1_0406	-	ATP sythase I
381	 55.87	0	414331..415080	+	249	62289372	atpB	BruAb1_0407	-	F0F1 ATP synthase subunit A
382	 62.28	+1	415148..415375	+	75	62289373	atpE	BruAb1_0408	-	F0F1 ATP synthase subunit C
383	 63.00	+1	415547..416173	+	208	62289374	-	BruAb1_0409	-	F0F1 ATP synthase subunit B'
384	 56.25	0	416184..416663	+	159	62289375	atpF	BruAb1_0410	-	F0F1 ATP synthase subunit B
385	 62.44	+1	416786..417448	-	220	62289376	rnhB	BruAb1_0411	-	ribonuclease HII
386	 61.13	0	417625..418797	-	390	62289377	-	BruAb1_0412	-	hypothetical protein
387	 62.33	+1	418933..419439	+	168	62289378	-	BruAb1_0413	-	hypothetical protein
388	 56.78	0	419519..419791	-	90	62289379	-	BruAb1_0414	-	hypothetical protein
389	 55.80	0	419935..420210	-	91	62289380	-	BruAb1_0415	-	hypothetical protein
390	 33.33	-2	420282..420494	-	70	62289381	-	BruAb1_0416	-	hypothetical protein
391	 48.30	-2	420478..420624	-	48	62289382	-	BruAb1_0417	-	hypothetical protein
392	 60.22	0	420569..421468	-	299	62289383	ispE	BruAb1_0418	-	IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
393	 61.26	0	421498..421719	-	73	62289384	-	BruAb1_0419	-	hypothetical protein
394	 47.22	-2	424380..424595	-	71	62289385	-	BruAb1_0421	-	hypothetical protein
395	 65.61	+2	424650..425408	-	252	62289386	-	BruAb1_0422	-	hypothetical protein
396	 53.07	0	425429..425656	-	75	62289387	-	BruAb1_0423	-	hypothetical protein
397	 61.95	+1	425925..426941	+	338	62289388	-	BruAb1_0424	-	polyprenyl synthetase family protein
398	 59.11	0	427245..429110	+	621	62289389	-	BruAb1_0425	-	TPR domain-containing protein
399	 57.17	0	429262..430188	+	308	62289390	glyQ	BruAb1_0426	-	glycyl-tRNA synthetase subunit alpha
400	 59.85	0	430307..432640	+	777	62289391	glyS	BruAb1_0427	-	glycyl-tRNA synthetase subunit beta
401	 64.92	+1	432779..433750	+	323	62289392	-	BruAb1_0428	-	Sua5/YciO/YrdC family protein
402	 59.02	0	433776..435188	+	470	62289393	-	BruAb1_0429	-	oxidoreductase, FAD-binding
403	 52.52	-1	435226..435543	-	105	62289394	-	BruAb1_0430	-	hypothetical protein
404	 54.79	0	435540..435800	-	86	62289395	-	BruAb1_0431	-	hypothetical protein
405	 45.98	-2	435909..436082	-	57	62289396	-	BruAb1_0432	-	hypothetical protein
406	 62.08	+1	436111..436677	+	188	62289397	-	BruAb1_0433	-	hypothetical protein
407	 60.69	0	436820..437572	-	250	62289398	-	BruAb1_0434	-	enoyl-CoA hydratase
408	 61.16	0	437575..439353	-	592	62289399	-	BruAb1_0435	-	acyl-CoA dehydrogenase family protein
409	 57.85	0	439671..440816	+	381	62289400	-	BruAb1_0436	-	GGDEF domain-containing protein
410	 61.14	0	440829..442112	-	427	62289401	purD	BruAb1_0437	-	phosphoribosylamine--glycine ligase
411	 61.48	+1	442257..443258	+	333	62289402	ubiA	BruAb1_0438	-	prenyltransferase
412	 59.49	0	443298..443924	-	208	62289403	pdxH	BruAb1_0439	-	pyridoxamine 5'-phosphate oxidase
413	 56.26	0	444183..444653	+	156	62289404	-	BruAb1_0440	-	hypothetical protein
414	 60.19	0	444798..445739	+	313	62289405	-	BruAb1_0441	-	chaperone protein DnaJ
415	 48.15	-2	445743..445850	-	35	62289406	-	BruAb1_0442	-	hypothetical protein
416	 56.78	0	445883..446701	+	272	62289407	fabI-1	BruAb1_0443	-	enoyl-(acyl carrier protein) reductase
417	 58.71	0	446816..447406	+	196	62289408	-	BruAb1_0444	-	phosphoglycerate mutase family protein
418	 53.33	0	447668..447877	+	69	62289409	-	BruAb1_0445	-	cold-shock family protein
419	 49.33	-1	447975..448124	-	49	62289410	-	BruAb1_0446	-	hypothetical protein
420	 55.87	0	448347..448559	+	70	62289411	-	BruAb1_0447	-	hypothetical protein
421	 60.78	0	448654..449316	+	220	62289412	-	BruAb1_0448	-	hypothetical protein
422	 50.00	-1	449461..449712	-	83	62289413	-	BruAb1_0449	-	hypothetical protein
423	 60.82	0	449987..451081	+	364	62289414	aroC	BruAb1_0450	-	chorismate synthase
424	 57.30	0	452485..453498	+	337	62289415	-	BruAb1_0452	-	histone deacetylase family protein
425	 56.86	0	453503..453757	+	84	62289416	xseB	BruAb1_0453	-	exodeoxyribonuclease VII small subunit
426	 57.61	0	453764..454282	-	172	62289417	-	BruAb1_0454	-	dedA family protein
427	 52.87	-1	454524..454784	-	86	62289418	-	BruAb1_0455	-	transglycosylase-associated protein
428	 63.77	+1	454947..455498	+	183	62289419	-	BruAb1_0456	-	hypothetical protein
429	 60.94	0	455702..456574	+	290	62289420	-	BruAb1_0457	-	pirin-related protein
430	 62.01	+1	456717..458648	+	643	62289421	dxs	BruAb1_0458	-	1-deoxy-D-xylulose-5-phosphate synthase
431	 61.81	+1	458654..459415	+	253	62289422	tlyA	BruAb1_0459	-	TlyA, hemolysin A
432	 63.62	+1	459412..460659	+	415	62289423	-	BruAb1_0460	-	RNA methyltransferase
433	 57.71	0	460771..461373	-	200	62289424	-	BruAb1_0461	-	hypothetical protein
434	 51.64	-1	461503..461868	+	121	62289425	-	BruAb1_0462	-	hypothetical protein
435	 61.98	+1	462055..463269	+	404	62289426	-	BruAb1_0463	-	LysM domain-containing protein
436	 58.24	0	463471..465357	+	628	62289427	-	BruAb1_0464	-	ABC transporter, ATP-binding/permease protein
437	 59.51	0	465462..466160	+	232	62289428	-	BruAb1_0465	-	phosphatidylserine decarboxylase
438	 59.26	0	466165..467001	+	278	62289429	pssA	BruAb1_0466	-	PssA, CDP-diacylglycerol--serine O-phosphatidyltransferase
439	 61.00	0	467086..467826	-	246	62289430	-	BruAb1_0467	-	short chain dehydrogenase/reductase family oxidoreductase
440	 59.26	0	467895..469352	-	485	62289431	purF	BruAb1_0468	-	amidophosphoribosyltransferase
441	 48.99	-1	469374..469571	+	65	62289432	-	BruAb1_0469	-	hypothetical protein
442	 58.38	0	469667..470245	-	192	62289433	-	BruAb1_0470	-	colicin V production protein
443	 62.46	+1	470371..471774	-	467	62289434	radA	BruAb1_0471	-	DNA repair protein RadA
444	 58.57	0	471802..473307	-	501	62289435	dnaB	BruAb1_0472	-	replicative DNA helicase
445	 55.97	0	473506..474786	-	426	62289436	cfa	BruAb1_0473	-	Cfa, cyclopropane-fatty-acyl-phospholipid synthase
446	 58.25	0	475160..475729	-	189	62289437	rplI	BruAb1_0474	-	50S ribosomal protein L9
447	 62.28	+1	475759..476715	-	318	62289438	-	BruAb1_0475	-	hypothetical protein
448	 58.63	0	476866..477114	-	82	62289439	rpsR	BruAb1_0476	-	30S ribosomal protein S18
449	 61.52	+1	477117..477563	-	148	62289440	rpsF	BruAb1_0477	-	30S ribosomal protein S6
450	 54.72	0	477588..477947	-	119	62289441	-	BruAb1_0478	-	hypothetical protein
451	 61.48	+1	477969..478913	+	314	62289442	fabD	BruAb1_0479	-	acyl-carrier-protein S-malonyltransferase
452	 59.08	0	478983..479720	+	245	62289443	fabG	BruAb1_0480	-	3-ketoacyl-(acyl-carrier-protein) reductase
453	 53.59	0	479994..480230	+	78	62289444	acpP	BruAb1_0481	-	acyl carrier protein
454	 57.95	0	480234..480497	+	87	62289445	-	BruAb1_0482	-	hypothetical protein
455	 62.07	+1	480554..481816	+	420	62289446	fabF	BruAb1_0483	-	3-oxoacyl-(acyl carrier protein) synthase II
456	 59.00	0	482041..483279	+	412	62289447	-	BruAb1_0484	-	hypothetical protein
457	 61.44	+1	483464..484363	+	299	62289448	-	BruAb1_0485	-	hypothetical protein
458	 57.77	0	484372..485034	+	220	62289449	gmk	BruAb1_0486	-	guanylate kinase
459	 61.15	0	485061..486473	-	470	62289450	-	BruAb1_0487	-	hypothetical protein
460	 64.15	+1	486614..487210	-	198	62289451	-	BruAb1_0488	-	hypothetical protein
461	 58.25	0	487674..488528	+	284	62289452	coxB	BruAb1_0489	-	CoxB, cytochrome c oxidase, subunit II
462	 59.86	0	488666..490324	+	552	62289453	coxA	BruAb1_0490	-	CoxA, cytochrome c oxidase, subunit I
463	 57.79	0	492502..493380	+	292	62289454	coxC	BruAb1_0494	-	CoxC, cytochrome c oxidase, subunit III
464	 60.13	0	493879..494628	+	249	62289455	-	BruAb1_0496	-	SurF1 family protein
465	 57.91	0	494659..495777	+	372	62289456	ispH	BruAb1_0497	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
466	 58.72	0	495783..496763	+	326	62289457	thrB	BruAb1_0498	-	homoserine kinase
467	 59.78	0	496760..497224	+	154	62289458	rnhA	BruAb1_0499	-	ribonuclease H
468	 58.85	0	497254..497739	-	161	62289459	-	BruAb1_0500	-	ahpC/TSA family protein
469	 59.55	0	497919..498719	-	266	62289460	-	BruAb1_0501	-	hypothetical protein
470	 58.87	0	498854..499456	+	200	62289461	-	BruAb1_0502	-	hypothetical protein
471	 60.14	0	499578..502472	-	964	62289462	-	BruAb1_0503	-	sensory box protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.