IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
318	 58.57	0	348348..348989	+	213	62289309	-	BruAb1_0341	-	LuxR family DNA-binding response regulator
319	 60.74	0	349026..352550	-	1174	62289310	-	BruAb1_0342	-	sensor histidine kinase/response regulator
320	 52.38	-1	352835..352981	-	48	62289311	-	BruAb1_0343	-	hypothetical protein
321	 52.52	-1	353063..353479	+	138	62289312	mscL	BruAb1_0344	-	MscL, large conductance mechanosensitive channel protein
322	 58.53	0	353555..354832	-	425	62289313	hemA	BruAb1_0345	-	5-aminolevulinate synthase
323	 57.41	0	354978..355679	-	233	62289314	-	BruAb1_0346	-	polysaccharide deacetylase family protein
324	 56.67	0	355688..356407	-	239	62289315	-	BruAb1_0347	-	glycosyl transferase family protein
325	 52.00	-1	356537..357211	-	224	62289316	-	BruAb1_0348	-	hypothetical protein
326	 48.68	-2	357303..357491	-	62	62289317	-	BruAb1_0349	-	hypothetical protein
327	 59.37	0	357579..358469	-	296	62289318	-	BruAb1_0350	-	LysR family transcriptional regulator
328	 61.90	+1	358591..359010	+	139	62289319	-	BruAb1_0351	-	hypothetical protein
329	 62.71	+1	358997..359704	+	235	62289320	-	BruAb1_0352	-	hypothetical protein
330	 58.94	0	360250..361491	+	413	62289321	-	BruAb1_0354	-	lipoprotein
331	 61.00	0	361578..362459	+	293	62289322	panC	BruAb1_0355	-	pantoate--beta-alanine ligase
332	 62.44	+1	362461..363288	+	275	62289323	panB	BruAb1_0356	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
333	 54.83	0	363473..364249	-	258	62289324	fpr	BruAb1_0357	-	Fpr, ferredoxin--NADP reductase
334	 52.69	-1	364371..364463	+	30	62289325	-	BruAb1_0358	-	hypothetical protein
335	 52.14	-1	364652..365002	+	116	62289326	-	BruAb1_0359	-	hypothetical protein
336	 52.73	-1	365041..366138	+	365	62289327	nspC	BruAb1_0360	-	NspC, carboxynorspermidine decarboxylase
337	 55.23	0	366319..367560	+	413	62289328	-	BruAb1_0361	-	hypothetical protein
338	 59.26	0	367576..367791	-	71	62289329	-	BruAb1_0362	-	hypothetical protein
339	 61.22	0	367816..368844	-	342	62289330	-	BruAb1_0363	-	proline racemase
340	 43.52	-2	368899..369006	-	35	62289331	-	BruAb1_0364	-	hypothetical protein
341	 59.39	0	370758..371279	-	173	62289332	-	BruAb1_0366	-	invasion protein B
342	 58.56	0	371575..372894	+	439	62289333	-	BruAb1_0367	-	sensor histidine kinase
343	 55.92	0	372891..373532	+	213	62289334	-	BruAb1_0368	-	LuxR family DNA-binding response regulator
344	 54.24	0	373820..374302	+	160	62289335	-	BruAb1_0369	-	hypothetical protein
345	 59.46	0	374314..375882	+	522	62289336	-	BruAb1_0370	-	TRAP dicarboxylate transporter DctM
346	 58.51	0	375944..377071	+	375	62289337	-	BruAb1_0371	-	extracellular solute-binding protein
347	 59.83	0	377154..377972	-	272	62289338	-	BruAb1_0372	-	hypothetical protein
348	 61.13	0	377985..379412	-	475	62289339	-	BruAb1_0373	-	hypothetical protein
349	 56.52	0	379679..379954	+	91	62289340	-	BruAb1_0374	-	hypothetical protein
350	 61.05	0	379960..381438	+	492	62289341	-	BruAb1_0375	-	xanthine dehydrogenase
351	 59.73	0	381451..383568	+	705	62289342	-	BruAb1_0376	-	xanthine dehydrogenase
352	 58.10	0	383885..384631	+	248	62289343	-	BruAb1_0377	-	chaperone XdhC
353	 58.36	0	384712..385626	-	304	62289344	-	BruAb1_0378	-	LysR family transcriptional regulator
354	 58.43	0	385807..387057	+	416	62289345	-	BruAb1_0379	-	hypothetical protein
355	 58.70	0	387054..388358	+	434	62289346	-	BruAb1_0380	-	guanine deaminase
356	 62.08	+1	388438..389724	+	428	62289347	-	BruAb1_0381	-	hydroxypyruvate reductase
357	 53.46	0	389705..389863	-	52	62289348	ccoS	BruAb1_0382	-	CcoS, cytochrome oxidase maturation protein
358	 60.82	0	389860..392118	-	752	62289349	-	BruAb1_0383	-	nitrogen fixation protein FixI
359	 56.83	0	392115..392612	-	165	62289350	-	BruAb1_0384	-	FixH protein
360	 58.28	0	392612..394162	-	516	62289351	-	BruAb1_0385	-	iron-sulfur cluster-binding protein
361	 60.88	0	394314..395177	-	287	62289352	ccoP	BruAb1_0386	-	CcoP, cytochrome c oxidase, cbb3-type, subunit III
362	 49.69	-1	395170..395328	-	52	62289353	ccoQ	BruAb1_0387	-	CcoQ, cytochrome c oxidase, cbb3-type, CcoQ subunit
363	 58.88	0	395343..396074	-	243	62289354	ccoO	BruAb1_0388	-	CcoO, cytochrome c oxidase, cbb3-type, subunit II
364	 57.87	0	396089..397714	-	541	62289355	ccoN	BruAb1_0389	-	CcoN, cytochrome c oxidase, cbb3-type, subunit I
365	 58.82	0	397932..398390	-	152	62289356	-	BruAb1_0390	-	FUR family transcriptional regulator
366	 52.02	-1	398389..398709	+	106	62289357	-	BruAb1_0391	-	hypothetical protein
367	 57.24	0	398821..399435	+	204	62289358	-	BruAb1_0392	-	twin-arginine translocation pathway signal sequence domain-containing protein
368	 59.39	0	401127..402212	+	361	62289359	ada	BruAb1_0394	-	Ada, ada regulatory protein
369	 53.28	0	402394..402744	+	116	62289360	-	BruAb1_0395	-	hypothetical protein
370	 60.06	0	403081..404124	+	347	62289361	-	BruAb1_0396	-	hypothetical protein
371	 62.62	+1	404346..405458	+	370	62289362	-	BruAb1_0397	-	major facilitator transporter
372	 55.93	0	405680..406927	+	415	62289363	bacA	BruAb1_0398	-	transport protein
373	 60.06	0	406966..407964	-	332	62289364	-	BruAb1_0399	-	hypothetical protein
374	 62.50	+1	408210..408881	+	223	62289365	-	BruAb1_0400	-	hypothetical protein
375	 61.57	+1	408903..410354	+	483	62289366	engA	BruAb1_0401	-	GTP-binding protein EngA
376	 57.02	0	410513..411829	+	438	62289367	-	BruAb1_0402	-	HSP70 family protein
377	 52.38	-1	411918..412043	-	41	62289368	-	BruAb1_0403	-	hypothetical protein
378	 60.39	0	412265..413554	+	429	62289369	-	BruAb1_0404	-	hypothetical protein
379	 53.33	0	413582..413686	+	34	62289370	-	BruAb1_0405	-	hypothetical protein
380	 56.14	0	413825..414223	+	132	62289371	-	BruAb1_0406	-	ATP sythase I
381	 55.87	0	414331..415080	+	249	62289372	atpB	BruAb1_0407	-	F0F1 ATP synthase subunit A
382	 62.28	+1	415148..415375	+	75	62289373	atpE	BruAb1_0408	-	F0F1 ATP synthase subunit C
383	 63.00	+1	415547..416173	+	208	62289374	-	BruAb1_0409	-	F0F1 ATP synthase subunit B'
384	 56.25	0	416184..416663	+	159	62289375	atpF	BruAb1_0410	-	F0F1 ATP synthase subunit B
385	 62.44	+1	416786..417448	-	220	62289376	rnhB	BruAb1_0411	-	ribonuclease HII
386	 61.13	0	417625..418797	-	390	62289377	-	BruAb1_0412	-	hypothetical protein
387	 62.33	+1	418933..419439	+	168	62289378	-	BruAb1_0413	-	hypothetical protein
388	 56.78	0	419519..419791	-	90	62289379	-	BruAb1_0414	-	hypothetical protein
389	 55.80	0	419935..420210	-	91	62289380	-	BruAb1_0415	-	hypothetical protein
390	 33.33	-2	420282..420494	-	70	62289381	-	BruAb1_0416	-	hypothetical protein
391	 48.30	-2	420478..420624	-	48	62289382	-	BruAb1_0417	-	hypothetical protein
392	 60.22	0	420569..421468	-	299	62289383	ispE	BruAb1_0418	-	IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
393	 61.26	0	421498..421719	-	73	62289384	-	BruAb1_0419	-	hypothetical protein
394	 47.22	-2	424380..424595	-	71	62289385	-	BruAb1_0421	-	hypothetical protein
395	 65.61	+2	424650..425408	-	252	62289386	-	BruAb1_0422	-	hypothetical protein
396	 53.07	0	425429..425656	-	75	62289387	-	BruAb1_0423	-	hypothetical protein
397	 61.95	+1	425925..426941	+	338	62289388	-	BruAb1_0424	-	polyprenyl synthetase family protein
398	 59.11	0	427245..429110	+	621	62289389	-	BruAb1_0425	-	TPR domain-containing protein
399	 57.17	0	429262..430188	+	308	62289390	glyQ	BruAb1_0426	-	glycyl-tRNA synthetase subunit alpha
400	 59.85	0	430307..432640	+	777	62289391	glyS	BruAb1_0427	-	glycyl-tRNA synthetase subunit beta
401	 64.92	+1	432779..433750	+	323	62289392	-	BruAb1_0428	-	Sua5/YciO/YrdC family protein
402	 59.02	0	433776..435188	+	470	62289393	-	BruAb1_0429	-	oxidoreductase, FAD-binding
403	 52.52	-1	435226..435543	-	105	62289394	-	BruAb1_0430	-	hypothetical protein
404	 54.79	0	435540..435800	-	86	62289395	-	BruAb1_0431	-	hypothetical protein
405	 45.98	-2	435909..436082	-	57	62289396	-	BruAb1_0432	-	hypothetical protein
406	 62.08	+1	436111..436677	+	188	62289397	-	BruAb1_0433	-	hypothetical protein
407	 60.69	0	436820..437572	-	250	62289398	-	BruAb1_0434	-	enoyl-CoA hydratase
408	 61.16	0	437575..439353	-	592	62289399	-	BruAb1_0435	-	acyl-CoA dehydrogenase family protein
409	 57.85	0	439671..440816	+	381	62289400	-	BruAb1_0436	-	GGDEF domain-containing protein
410	 61.14	0	440829..442112	-	427	62289401	purD	BruAb1_0437	-	phosphoribosylamine--glycine ligase
411	 61.48	+1	442257..443258	+	333	62289402	ubiA	BruAb1_0438	-	prenyltransferase
412	 59.49	0	443298..443924	-	208	62289403	pdxH	BruAb1_0439	-	pyridoxamine 5'-phosphate oxidase
413	 56.26	0	444183..444653	+	156	62289404	-	BruAb1_0440	-	hypothetical protein
414	 60.19	0	444798..445739	+	313	62289405	-	BruAb1_0441	-	chaperone protein DnaJ
415	 48.15	-2	445743..445850	-	35	62289406	-	BruAb1_0442	-	hypothetical protein
416	 56.78	0	445883..446701	+	272	62289407	fabI-1	BruAb1_0443	-	enoyl-(acyl carrier protein) reductase
417	 58.71	0	446816..447406	+	196	62289408	-	BruAb1_0444	-	phosphoglycerate mutase family protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.