IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
197	 59.09	0	227343..227540	-	65	62289188	-	BruAb1_0211	-	hypothetical protein
198	 63.38	+1	227537..228541	-	334	62289189	-	BruAb1_0212	-	D-amino acid oxidase family protein
199	 62.67	+1	228541..229416	-	291	62289190	thiD	BruAb1_0213	-	ThiD, phosphomethylpyrimidine kinase
200	 57.72	0	229845..231956	+	703	62289191	-	BruAb1_0214	-	sensory box protein
201	 62.11	+1	232055..234334	+	759	62289192	-	BruAb1_0215	-	copper-translocating P-type ATPase
202	 58.67	0	234314..234763	-	149	62289193	-	BruAb1_0216	-	MerR family transcriptional regulator
203	 61.31	0	234869..235615	-	248	62289194	-	BruAb1_0217	-	ABC transporter, permease protein
204	 63.58	+1	235612..236550	-	312	62289195	-	BruAb1_0218	-	ABC transporter, ATP-binding protein
205	 62.36	+1	236547..237707	-	386	62289196	-	BruAb1_0219	-	ABC transporter, permease protein
206	 56.83	0	237780..238694	-	304	62289197	-	BruAb1_0220	-	ABC transporter periplasmic substrate-binding protein
207	 45.62	-2	238880..239530	-	216	62289198	-	BruAb1_0221	-	hypothetical protein
208	 60.82	0	239834..241099	-	421	62289199	-	BruAb1_0222	-	glutamate dehydrogenase
209	 50.94	-1	241299..241457	+	52	62289200	-	BruAb1_0223	-	hypothetical protein
210	 58.82	0	242698..243003	+	101	62289201	soxD	BruAb1_0225	-	SoxD, sarcosine oxidase, delta subunit
211	 57.48	0	246011..246565	+	184	62289202	soxG	BruAb1_0227	-	SoxG, sarcosine oxidase, gamma subunit
212	 59.84	0	246618..247466	-	282	62289203	-	BruAb1_0228	-	hypothetical protein
213	 60.63	0	247524..248318	-	264	62289204	-	BruAb1_0229	-	IclR family transcriptional regulator
214	 57.65	0	248476..249795	+	439	62289205	-	BruAb1_0230	-	sugar ABC transporter, periplasmic sugar-binding protein
215	 58.66	0	249856..250779	+	307	62289206	-	BruAb1_0231	-	sugar ABC transporter, permease protein
216	 59.82	0	250782..251657	+	291	62289207	-	BruAb1_0232	-	sugar ABC transporter, permease protein
217	 60.26	0	251665..252756	+	363	62289208	-	BruAb1_0233	-	sugar ABC transporter, ATP-binding protein
218	 59.79	0	252759..253877	+	372	62289209	-	BruAb1_0234	-	mandelate racemase/muconate lactonizing enzyme family protein
219	 51.01	-1	253874..254218	+	114	62289210	-	BruAb1_0235	-	hypothetical protein
220	 60.46	0	254211..255290	+	359	62289211	-	BruAb1_0236	-	Gfo/Idh/MocA family oxidoreductase
221	 51.52	-1	255293..255391	+	32	62289212	-	BruAb1_0237	-	hypothetical protein
222	 61.50	+1	255395..256129	+	244	62289213	-	BruAb1_0238	-	short chain dehydrogenase/reductase family oxidoreductase
223	 58.98	0	256170..257015	+	281	62289214	-	BruAb1_0239	-	fumarylacetoacetate hydrolase family protein
224	 58.53	0	257029..258306	+	425	62289215	-	BruAb1_0240	-	mandelate racemase/muconate lactonizing protein
225	 48.01	-2	258705..259256	-	183	62289216	-	BruAb1_0241	-	hypothetical protein
226	 47.47	-2	259291..259488	-	65	62289217	-	BruAb1_0242	-	hypothetical protein
227	 52.38	-1	259666..259875	+	69	62289218	-	BruAb1_0243	-	hypothetical protein
228	 49.09	-1	259958..260287	-	109	62289219	-	BruAb1_0244	-	hypothetical protein
229	 55.47	0	260459..261655	+	398	62289220	-	BruAb1_0245	-	integrase prophage protein
230	 45.64	-2	261652..262098	+	148	62289221	-	BruAb1_0246	-	hypothetical protein
231	 55.71	0	262166..262384	+	72	62289222	-	BruAb1_0247	-	hypothetical protein
232	 52.38	-1	262385..262594	+	69	62289223	-	BruAb1_0248	-	hypothetical protein
233	 53.02	0	262591..262905	+	104	62289224	-	BruAb1_0249	-	hypothetical protein
234	 59.86	0	262902..263783	+	293	62289225	-	BruAb1_0250	-	hypothetical protein
235	 53.88	0	265457..265894	+	145	62289226	-	BruAb1_0252	-	hypothetical protein
236	 53.79	0	266048..267064	+	338	62289227	-	BruAb1_0253	-	hypothetical protein
237	 49.52	-1	267166..267375	+	69	62289228	-	BruAb1_0254	-	hypothetical protein
238	 56.23	0	267576..269492	+	638	62289229	flgJ	BruAb1_0255	-	hypothetical protein
239	 52.94	0	271724..272029	+	101	62289230	-	BruAb1_0257	-	hypothetical protein
240	 48.54	-2	272071..272550	+	159	62289231	-	BruAb1_0258	-	hypothetical protein
241	 47.08	-2	272653..273132	+	159	62289232	-	BruAb1_0259	-	hypothetical protein
242	 55.56	0	273129..273335	+	68	62289233	-	BruAb1_0260	-	hypothetical protein
243	 54.24	0	273399..273752	+	117	62289234	-	BruAb1_0261	-	hypothetical protein
244	 58.55	0	273836..274069	-	77	62289235	-	BruAb1_0262	-	hypothetical protein
245	 47.06	-2	274246..274602	+	118	62289236	-	BruAb1_0263	-	hypothetical protein
246	 48.82	-1	274599..275147	+	182	62289237	-	BruAb1_0264	-	zinc-dependent metallopeptidase
247	 40.12	-2	275532..276017	-	161	62289238	-	BruAb1_0265	-	hypothetical protein
248	 36.69	-2	276014..276490	-	158	62289239	-	BruAb1_0266	-	hypothetical protein
249	 53.66	0	276554..276799	-	81	62289240	-	BruAb1_0267	-	hypothetical protein
250	 54.07	0	276877..277122	+	81	62289241	-	BruAb1_0268	-	hypothetical protein
251	 51.89	-1	277188..277478	+	96	62289242	-	BruAb1_0269	-	hypothetical protein
252	 56.48	0	277475..278014	+	179	62289243	-	BruAb1_0270	-	hypothetical protein
253	 52.55	-1	278285..278893	+	202	62289244	-	BruAb1_0271	-	hypothetical protein
254	 54.05	0	278956..279288	+	110	62289245	-	BruAb1_0272	-	hypothetical protein
255	 55.38	0	279278..279472	+	64	62289246	-	BruAb1_0273	-	hypothetical protein
256	 47.41	-2	279593..280345	-	250	62289247	-	BruAb1_0274	-	hypothetical protein
257	 60.19	0	281400..281615	-	71	62289248	-	BruAb1_0275	-	zinc-binding protein
258	 61.08	0	281625..282251	-	208	62289249	maf	BruAb1_0276	-	Maf-like protein
259	 51.60	-1	282285..282503	-	72	62289250	infA	BruAb1_0277	-	translation initiation factor IF-1
260	 58.65	0	282615..283088	-	157	62289251	-	BruAb1_0278	-	protein phosphatase
261	 58.80	0	283095..283577	-	160	62289252	-	BruAb1_0279	-	hypothetical protein
262	 61.79	+1	283584..284876	-	430	62289253	hisD	BruAb1_0280	-	histidinol dehydrogenase
263	 55.10	0	284951..285391	-	146	62289254	-	BruAb1_0281	-	hypothetical protein
264	 60.93	0	285662..286951	-	429	62289255	murA	BruAb1_0282	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
265	 59.44	0	287174..287353	-	59	62289256	-	BruAb1_0283	-	hypothetical protein
266	 55.63	0	287656..289422	+	588	62289257	-	BruAb1_0284	-	phage integrase family site specific recombinase
267	 56.41	0	289953..290147	+	64	62289258	-	BruAb1_0286	-	hypothetical protein
268	 58.25	0	290739..291356	+	205	62289259	-	BruAb1_0287	-	resolvase family site-specific recombinase
269	 57.02	0	293418..293645	-	75	62289260	-	BruAb1_0289	-	hypothetical protein
270	 56.84	0	294258..294542	-	94	62289261	-	BruAb1_0290	-	hypothetical protein
271	 55.94	0	294656..294916	-	86	62289262	-	BruAb1_0291	-	hypothetical protein
272	 52.56	-1	295000..295389	+	129	62289263	-	BruAb1_0292	-	hypothetical protein
273	 61.68	+1	295982..296824	+	280	62289264	ureD-1	BruAb1_0293	-	UreD-1, urease accessory protein UreD
274	 60.40	0	296977..297279	+	100	62289265	ureA	BruAb1_0294	-	urease subunit gamma
275	 57.84	0	297446..297751	+	101	62289266	ureB	BruAb1_0295	-	urease subunit beta
276	 60.36	0	297770..299482	+	570	62289267	ureC	BruAb1_0296	-	urease subunit alpha
277	 59.50	0	299498..300013	+	171	62289268	ureE	BruAb1_0297	-	urease accessory protein UreE
278	 63.17	+1	299985..300671	+	228	62289269	ureF	BruAb1_0298	-	urease accessory protein UreF
279	 57.26	0	300668..301294	+	208	62289270	ureG-1	BruAb1_0299	-	UreG-1, urease accessory protein UreG
280	 58.55	0	301650..303275	-	541	62289271	-	BruAb1_0300	-	sensor histidine kinase
281	 52.12	-1	303369..303533	+	54	62289272	-	BruAb1_0301	-	hypothetical protein
282	 60.68	0	303560..304711	+	383	62289273	-	BruAb1_0302	-	transporter
283	 60.28	0	304726..307857	+	1043	62289274	-	BruAb1_0303	-	AcrB/AcrD/AcrF multidrug efflux protein
284	 55.12	0	310966..311649	+	227	62289275	-	BruAb1_0306	-	TetR family transcriptional regulator
285	 60.95	0	312079..313389	-	436	62289276	-	BruAb1_0308	-	dihydropyrimidine dehydrogenase
286	 61.17	0	313408..314898	-	496	62289277	-	BruAb1_0309	-	putative oxidoreductase
287	 56.29	0	315077..315529	-	150	62289278	-	BruAb1_0310	-	hypothetical protein
288	 60.55	0	315680..317329	+	549	62289279	pgi	BruAb1_0311	-	glucose-6-phosphate isomerase
289	 58.76	0	317463..318524	+	353	62289280	-	BruAb1_0312	-	hypothetical protein
290	 60.11	0	318524..319270	+	248	62289281	-	BruAb1_0313	-	HAD superfamily hydrolase
291	 58.88	0	319243..320115	-	290	62289282	-	BruAb1_0314	-	hypothetical protein
292	 59.16	0	320141..321805	-	554	62289283	fadD	BruAb1_0315	-	acyl-CoA synthetase
293	 56.19	0	322237..322866	-	209	62289284	-	BruAb1_0316	-	TetR family transcriptional regulator
294	 59.88	0	323039..324232	+	397	62289285	-	BruAb1_0317	-	HlyD family secretion protein
295	 60.20	0	324229..327384	+	1051	62289286	-	BruAb1_0318	-	hydrophobe/amphiphile efflux-1 family protein
296	 52.98	0	327495..327662	-	55	62289287	-	BruAb1_0319	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.