IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1917	 55.21	0	2007313..2008578	-	421	62290908	rho	BruAb1_2039	-	transcription termination factor Rho
1918	 53.82	0	2008960..2009496	-	178	62290909	-	BruAb1_2040	-	hypothetical protein
1919	 55.65	0	2009493..2010518	-	341	62290910	hemE	BruAb1_2041	-	uroporphyrinogen decarboxylase
1920	 55.71	0	2010971..2011810	+	279	62290911	-	BruAb1_2042	-	hypothetical protein
1921	 54.67	0	2011807..2012406	+	199	62290912	maf	BruAb1_2043	-	Maf-like protein
1922	 58.39	0	2012399..2013268	+	289	62290913	aroE	BruAb1_2044	-	shikimate 5-dehydrogenase
1923	 57.21	0	2013265..2013867	+	200	62290914	coaE	BruAb1_2045	-	dephospho-CoA kinase
1924	 57.87	0	2013909..2014613	+	234	62290915	dnaQ	BruAb1_2046	-	DNA polymerase III subunit epsilon
1925	 56.91	0	2014671..2015162	-	163	62290916	secB	BruAb1_2047	-	preprotein translocase subunit SecB
1926	 59.64	0	2015282..2015779	-	165	62290917	fxsA	BruAb1_2048	-	FxsA
1927	 55.32	0	2015996..2016691	+	231	62290918	-	BruAb1_2049	-	hypothetical protein
1928	 60.09	0	2016755..2017864	+	369	62290919	-	BruAb1_2050	-	transglycosylase-related protein
1929	 63.18	+1	2017870..2018472	+	200	62290920	-	BruAb1_2051	-	Smr family protein
1930	 58.01	0	2018469..2018849	+	126	62290921	-	BruAb1_2052	-	hypothetical protein
1931	 56.45	0	2018858..2019787	-	309	62290922	-	BruAb1_2053	-	hypothetical protein
1932	 59.77	0	2020024..2021328	-	434	62290923	hslU	BruAb1_2054	-	ATP-dependent protease ATP-binding subunit
1933	 59.46	0	2021402..2021956	-	184	62290924	hslV	BruAb1_2055	-	ATP-dependent protease peptidase subunit
1934	 59.77	0	2022253..2022861	+	202	62290925	hisB	BruAb1_2056	-	imidazoleglycerol-phosphate dehydratase
1935	 59.61	0	2022971..2023480	+	169	62290926	-	BruAb1_2057	-	hypothetical protein
1936	 58.06	0	2023483..2024133	+	216	62290927	hisH	BruAb1_2058	-	imidazole glycerol phosphate synthase subunit HisH
1937	 59.70	0	2024138..2024869	+	243	62290928	hisA	BruAb1_2059	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1938	 60.31	0	2024866..2025651	+	261	62290929	hisF	BruAb1_2060	-	imidazole glycerol phosphate synthase subunit HisF
1939	 62.04	+1	2025787..2026110	+	107	62290930	hisE	BruAb1_2061	-	phosphoribosyl-ATP pyrophosphatase
1940	 57.48	0	2026125..2027093	+	322	62290931	coaA	BruAb1_2062	-	pantothenate kinase
1941	 59.11	0	2027156..2027605	-	149	62290932	-	BruAb1_2063	-	hypothetical protein
1942	 58.33	0	2029717..2030436	+	239	62290933	bvrR	BruAb1_2065	-	BvrR, DNA-binding response regulator
1943	 59.58	0	2030547..2032352	+	601	62290934	bvrS	BruAb1_2066	-	BvrS, sensor histidine kinase
1944	 60.21	0	2032378..2032857	+	159	62290935	-	BruAb1_2067	-	hypothetical protein
1945	 51.81	-1	2032832..2033107	+	91	62290936	-	BruAb1_2068	-	hypothetical protein
1946	 55.22	0	2033109..2033510	+	133	62290937	-	BruAb1_2069	-	PTS system, IIA component
1947	 59.68	0	2033514..2033828	+	104	62290938	ptsH	BruAb1_2070	-	PtsH, phosphocarrier protein HPr
1948	 58.24	0	2034136..2035536	+	466	62290939	ahcY	BruAb1_2072	-	S-adenosyl-L-homocysteine hydrolase
1949	 58.57	0	2035724..2035933	+	69	62290940	-	BruAb1_2073	-	hypothetical protein
1950	 60.54	0	2035921..2038500	+	859	62290941	-	BruAb1_2074	-	sensory box histidine kinase
1951	 59.27	0	2038509..2040050	+	513	62290942	-	BruAb1_2075	-	hypothetical protein
1952	 59.31	0	2040037..2040756	+	239	62290943	-	BruAb1_2076	-	nucleotidyltransferase family protein
1953	 62.93	+1	2040771..2043929	+	1052	62290944	-	BruAb1_2077	-	hypothetical protein
1954	 61.42	+1	2043926..2047468	+	1180	62290945	-	BruAb1_2078	-	UvrD/Rep family helicase
1955	 44.93	-2	2047446..2047583	+	45	62290946	-	BruAb1_2079	-	hypothetical protein
1956	 58.33	0	2047650..2047973	+	107	62290947	trx-1	BruAb1_2080	-	Trx-1, thioredoxin
1957	 59.89	0	2048027..2049355	-	442	62290948	folC	BruAb1_2081	-	FolC, FolC bifunctional protein
1958	 57.28	0	2049358..2050263	-	301	62290949	accD	BruAb1_2082	-	acetyl-CoA carboxylase subunit beta
1959	 58.81	0	2050324..2051163	-	279	62290950	trpA	BruAb1_2083	-	tryptophan synthase subunit alpha
1960	 62.61	+1	2051160..2051627	-	155	62290951	-	BruAb1_2084	-	hypothetical protein
1961	 60.20	0	2051630..2052850	-	406	62290952	trpB	BruAb1_2085	-	tryptophan synthase subunit beta
1962	 58.59	0	2052870..2053538	-	222	62290953	trpF	BruAb1_2086	-	N-(5'-phosphoribosyl)anthranilate isomerase
1963	 57.70	0	2053577..2054212	-	211	62290954	-	BruAb1_2087	-	hypothetical protein
1964	 60.50	0	2054209..2054970	-	253	62290955	-	BruAb1_2088	-	hypothetical protein
1965	 60.23	0	2056871..2057662	-	263	62290956	-	BruAb1_2091	-	hypothetical protein
1966	 55.87	0	2057962..2058498	+	178	62290957	infC	BruAb1_2092	-	translation initiation factor IF-3
1967	 54.63	0	2058627..2059241	+	204	62290958	-	BruAb1_2093	-	nickel-cobalt-cadmium resistance protein
1968	 57.71	0	2059508..2059708	+	66	62290959	rpmI	BruAb1_2094	-	50S ribosomal protein L35
1969	 57.78	0	2059736..2060140	+	134	62290960	rplT	BruAb1_2095	-	50S ribosomal protein L20
1970	 58.13	0	2060239..2061081	+	280	62290961	-	BruAb1_2096	-	hypothetical protein
1971	 59.19	0	2061209..2062318	+	369	62290962	pheS	BruAb1_2097	-	phenylalanyl-tRNA synthetase subunit alpha
1972	 60.37	0	2062340..2064754	+	804	62290963	pheT	BruAb1_2098	-	phenylalanyl-tRNA synthetase subunit beta
1973	 57.85	0	2064824..2065810	+	328	62290964	-	BruAb1_2099	-	Gfo/Idh/MocA family oxidoreductase
1974	 58.41	0	2066036..2067949	+	637	62290965	dnaK	BruAb1_2100	-	molecular chaperone DnaK
1975	 59.61	0	2068194..2069327	+	377	62290966	dnaJ	BruAb1_2101	-	DnaJ, chaperone protein DnaJ
1976	 56.17	0	2069448..2070047	+	199	62290967	pmtA	BruAb1_2102	-	PmtA, phospholipid N-methyltransferase
1977	 60.11	0	2070257..2070973	+	238	62290968	pyrF	BruAb1_2103	-	orotidine 5'-phosphate decarboxylase
1978	 58.68	0	2071022..2071309	+	95	62290969	-	BruAb1_2104	-	hypothetical protein
1979	 59.47	0	2071347..2072222	-	291	62290970	-	BruAb1_2105	-	Smp-30/Cgr1 family protein
1980	 58.68	0	2072470..2073408	+	312	62290971	gshB	BruAb1_2106	-	glutathione synthetase
1981	 57.65	0	2075098..2075718	-	206	62290972	-	BruAb1_2108	-	hypothetical protein
1982	 53.51	0	2075980..2076093	+	37	62290973	-	BruAb1_2109	-	hypothetical protein
1983	 61.06	0	2076166..2076522	-	118	62290974	-	BruAb1_2110	-	rare lipoprotein A family protein
1984	 42.79	-2	2076678..2076899	+	73	62290975	-	BruAb1_2111	-	hypothetical protein
1985	 58.96	0	2077042..2077482	+	146	62290976	-	BruAb1_2112	-	hypothetical protein
1986	 56.73	0	2077637..2078683	+	348	62290977	-	BruAb1_2113	-	phosphate ABC transporter, phosphate-binding protein
1987	 60.30	0	2078825..2080315	+	496	62290978	pstC	BruAb1_2114	-	PstC, phosphate ABC transporter, permease protein
1988	 59.88	0	2080315..2081625	+	436	62290979	-	BruAb1_2115	-	phosphate ABC transporter, permease protein
1989	 59.12	0	2081642..2082463	+	273	62290980	pstB	BruAb1_2116	-	PstB, phosphate ABC transporter, ATP-binding protein
1990	 57.54	0	2082529..2083251	+	240	62290981	phoU	BruAb1_2117	-	PhoU, phosphate transport system regulatory protein PhoU
1991	 61.86	+1	2083369..2084055	+	228	62290982	phoB	BruAb1_2118	-	PhoB, phosphate regulon transcriptional regulatory protein Phob
1992	 48.43	-2	2084411..2084569	-	52	62290983	-	BruAb1_2119	-	hypothetical protein
1993	 62.08	+1	2084641..2085621	+	326	62290984	-	BruAb1_2120	-	lipoprotein
1994	 54.01	0	2085731..2086054	-	107	62290985	-	BruAb1_2121	-	lipoprotein
1995	 60.77	0	2086131..2087384	+	417	62290986	pepS	BruAb1_2122	-	PepS, aminopeptidase
1996	 55.62	0	2087545..2088042	-	165	62290987	-	BruAb1_2123	-	DNA starvation/stationary phase protection protein Dps
1997	 59.67	0	2088229..2089014	+	261	62290988	-	BruAb1_2124	-	protease
1998	 61.28	0	2089019..2089519	+	166	62290989	-	BruAb1_2125	-	acetyltransferase
1999	 60.07	0	2089516..2090319	+	267	62290990	-	BruAb1_2126	-	acyltransferase
2000	 61.11	0	2090377..2091780	+	467	62290991	-	BruAb1_2127	-	hypothetical protein
2001	 60.98	0	2092017..2093000	+	327	62290992	-	BruAb1_2128	-	PhoH family protein
2002	 55.04	0	2093126..2093641	+	171	62290993	-	BruAb1_2129	-	hypothetical protein
2003	 60.16	0	2093734..2094762	+	342	62290994	-	BruAb1_2130	-	CBS domain-containing protein
2004	 60.29	0	2094759..2096357	+	532	62290995	lnt	BruAb1_2131	-	apolipoprotein N-acyltransferase
2005	 53.14	0	2096504..2096917	+	137	62290996	-	BruAb1_2132	-	Cro/CI family transcriptional regulator
2006	 60.51	0	2097144..2098409	+	421	62290997	metK	BruAb1_2133	-	S-adenosylmethionine synthetase
2007	 61.54	+1	2098418..2099119	+	233	62290998	trmB	BruAb1_2134	-	tRNA (guanine-N(7))-methyltransferase
2008	 58.79	0	2099287..2099946	+	219	62290999	-	BruAb1_2135	-	hypothetical protein
2009	 59.23	0	2099999..2101612	+	537	62291000	nusA	BruAb1_2136	-	transcription elongation factor NusA
2010	 60.70	0	2101995..2102597	+	200	62291001	-	BruAb1_2137	-	hypothetical protein
2011	 62.85	+1	2102735..2105614	+	959	62291002	infB	BruAb1_2138	-	translation initiation factor IF-2
2012	 58.94	0	2105880..2106332	+	150	62291003	rbfA	BruAb1_2139	-	ribosome-binding factor A
2013	 60.51	0	2106336..2107310	+	324	62291004	truB	BruAb1_2140	-	tRNA pseudouridine synthase B
2014	 56.30	0	2107481..2107750	+	89	62291005	rpsO	BruAb1_2141	-	30S ribosomal protein S15
2015	 57.62	0	2108034..2110178	+	714	62291006	pnp	BruAb1_2142	-	polynucleotide phosphorylase/polyadenylase
2016	 58.49	0	2111360..2112178	-	272	62291007	fabI-2	BruAb1_2144	-	enoyl-(acyl carrier protein) reductase
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.