IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1873	 45.47	-2	1962575..1963324	+	249	62290864	-	BruAb1_1994	-	hypothetical protein
1874	 41.25	-2	1963351..1964436	+	361	62290865	-	BruAb1_1995	-	hypothetical protein
1875	 61.67	+1	1964609..1966510	-	633	62290866	-	BruAb1_1996	-	cobalamin biosynthesis protein
1876	 57.75	0	1966596..1967582	-	328	62290867	-	BruAb1_1997	-	cobalamin biosynthesis protein
1877	 63.93	+1	1967661..1967879	+	72	62290868	-	BruAb1_1998	-	hypothetical protein
1878	 56.83	0	1967857..1968486	-	209	62290869	-	BruAb1_1999	-	DnaJ domain-containing protein
1879	 48.99	-1	1968483..1968680	-	65	62290870	-	BruAb1_2000	-	hypothetical protein
1880	 57.78	0	1968673..1968987	+	104	62290871	bolA	BruAb1_2001	-	BolA, bolA protein
1881	 59.40	0	1969012..1970319	-	435	62290872	-	BruAb1_2002	-	CBS domain-containing protein
1882	 60.25	0	1970383..1971519	-	378	62290873	aroB	BruAb1_2003	-	3-dehydroquinate synthase
1883	 58.21	0	1971612..1972214	-	200	62290874	aroK	BruAb1_2004	-	AroK, shikimate kinase
1884	 54.11	0	1972339..1972545	+	68	62290875	-	BruAb1_2005	-	hypothetical protein
1885	 59.63	0	1972548..1973471	+	307	62290876	xerD	BruAb1_2006	-	site-specific tyrosine recombinase XerD
1886	 59.54	0	1973610..1974563	+	317	62290877	accA	BruAb1_2007	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1887	 58.50	0	1974785..1975996	+	403	62290878	-	BruAb1_2008	-	lipoprotein
1888	 54.65	0	1975975..1976232	+	85	62290879	-	BruAb1_2009	-	hypothetical protein
1889	 59.59	0	1976250..1977422	-	390	62290880	-	BruAb1_2010	-	cobalamin synthesis protein/P47K family protein
1890	 60.75	0	1977424..1978539	-	371	62290881	-	BruAb1_2011	-	D-alanyl-D-alanine carboxypeptidase
1891	 59.54	0	1978834..1979997	+	387	62290882	-	BruAb1_2012	-	M20/M25/M40 family peptidase
1892	 51.85	-1	1979994..1980128	+	44	62290883	-	BruAb1_2013	-	hypothetical protein
1893	 59.08	0	1980196..1980960	-	254	62290884	-	BruAb1_2014	-	glucose 1-dehydrogenase
1894	 50.57	-1	1981068..1981502	+	144	62290885	-	BruAb1_2015	-	hypothetical protein
1895	 45.80	-2	1981652..1981996	+	114	62290886	-	BruAb1_2016	-	hypothetical protein
1896	 58.59	0	1982066..1983700	-	544	62290887	-	BruAb1_2017	-	L-sorbose dehydrogenase
1897	 60.39	0	1983711..1984475	-	254	62290888	fabG	BruAb1_2018	-	3-ketoacyl-(acyl-carrier-protein) reductase
1898	 59.12	0	1984472..1985956	-	494	62290889	-	BruAb1_2019	-	GMC family oxidoreductase
1899	 59.83	0	1985969..1987489	-	506	62290890	-	BruAb1_2020	-	L-sorbosone dehydrogenase, NAD(P) dependent
1900	 61.00	0	1987483..1988259	-	258	62290891	-	BruAb1_2021	-	enoyl-CoA hydratase/isomerase family protein
1901	 59.78	0	1989869..1990870	-	333	62290892	-	BruAb1_2023	-	Gfo/Idh/MocA family oxidoreductase
1902	 58.92	0	1990849..1991907	-	352	62290893	-	BruAb1_2024	-	LacI family transcription regulator
1903	 58.80	0	1992158..1993327	+	389	62290894	-	BruAb1_2025	-	hypothetical protein
1904	 59.43	0	1993361..1994383	-	340	62290895	-	BruAb1_2026	-	luciferase family protein
1905	 55.71	0	1994380..1994589	-	69	62290896	-	BruAb1_2027	-	hypothetical protein
1906	 60.35	0	1994652..1995617	+	321	62290897	-	BruAb1_2028	-	ABC transporter periplasmic substrate-binding protein
1907	 49.81	-1	1995821..1996081	-	86	62290898	-	BruAb1_2029	-	hypothetical protein
1908	 58.64	0	1996261..1997145	+	294	62290899	-	BruAb1_2030	-	branched-chain amino acid ABC transporter, permease protein
1909	 59.50	0	1997142..1997936	+	264	62290900	-	BruAb1_2031	-	ABC transporter, ATP-binding protein
1910	 59.96	0	1998098..1999141	+	347	62290901	holA	BruAb1_2032	-	DNA polymerase III subunit delta
1911	 56.35	0	1999235..2000116	-	293	62290902	parB	BruAb1_2033	-	ParB, chromosome partitioning protein ParB
1912	 54.14	0	2000160..2000957	-	265	62290903	parA	BruAb1_2034	-	ParA, chromosome partitioning protein
1913	 54.52	0	2001010..2001651	-	213	62290904	gidB	BruAb1_2035	-	glucose-inhibited division protein B
1914	 56.78	0	2001648..2003558	-	636	62290905	gidA	BruAb1_2036	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1915	 52.97	0	2003785..2005113	-	442	62290906	trmE	BruAb1_2037	-	tRNA modification GTPase TrmE
1916	 54.87	0	2005228..2007228	+	666	62290907	-	BruAb1_2038	-	hypothetical protein
1917	 55.21	0	2007313..2008578	-	421	62290908	rho	BruAb1_2039	-	transcription termination factor Rho
1918	 53.82	0	2008960..2009496	-	178	62290909	-	BruAb1_2040	-	hypothetical protein
1919	 55.65	0	2009493..2010518	-	341	62290910	hemE	BruAb1_2041	-	uroporphyrinogen decarboxylase
1920	 55.71	0	2010971..2011810	+	279	62290911	-	BruAb1_2042	-	hypothetical protein
1921	 54.67	0	2011807..2012406	+	199	62290912	maf	BruAb1_2043	-	Maf-like protein
1922	 58.39	0	2012399..2013268	+	289	62290913	aroE	BruAb1_2044	-	shikimate 5-dehydrogenase
1923	 57.21	0	2013265..2013867	+	200	62290914	coaE	BruAb1_2045	-	dephospho-CoA kinase
1924	 57.87	0	2013909..2014613	+	234	62290915	dnaQ	BruAb1_2046	-	DNA polymerase III subunit epsilon
1925	 56.91	0	2014671..2015162	-	163	62290916	secB	BruAb1_2047	-	preprotein translocase subunit SecB
1926	 59.64	0	2015282..2015779	-	165	62290917	fxsA	BruAb1_2048	-	FxsA
1927	 55.32	0	2015996..2016691	+	231	62290918	-	BruAb1_2049	-	hypothetical protein
1928	 60.09	0	2016755..2017864	+	369	62290919	-	BruAb1_2050	-	transglycosylase-related protein
1929	 63.18	+1	2017870..2018472	+	200	62290920	-	BruAb1_2051	-	Smr family protein
1930	 58.01	0	2018469..2018849	+	126	62290921	-	BruAb1_2052	-	hypothetical protein
1931	 56.45	0	2018858..2019787	-	309	62290922	-	BruAb1_2053	-	hypothetical protein
1932	 59.77	0	2020024..2021328	-	434	62290923	hslU	BruAb1_2054	-	ATP-dependent protease ATP-binding subunit
1933	 59.46	0	2021402..2021956	-	184	62290924	hslV	BruAb1_2055	-	ATP-dependent protease peptidase subunit
1934	 59.77	0	2022253..2022861	+	202	62290925	hisB	BruAb1_2056	-	imidazoleglycerol-phosphate dehydratase
1935	 59.61	0	2022971..2023480	+	169	62290926	-	BruAb1_2057	-	hypothetical protein
1936	 58.06	0	2023483..2024133	+	216	62290927	hisH	BruAb1_2058	-	imidazole glycerol phosphate synthase subunit HisH
1937	 59.70	0	2024138..2024869	+	243	62290928	hisA	BruAb1_2059	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1938	 60.31	0	2024866..2025651	+	261	62290929	hisF	BruAb1_2060	-	imidazole glycerol phosphate synthase subunit HisF
1939	 62.04	+1	2025787..2026110	+	107	62290930	hisE	BruAb1_2061	-	phosphoribosyl-ATP pyrophosphatase
1940	 57.48	0	2026125..2027093	+	322	62290931	coaA	BruAb1_2062	-	pantothenate kinase
1941	 59.11	0	2027156..2027605	-	149	62290932	-	BruAb1_2063	-	hypothetical protein
1942	 58.33	0	2029717..2030436	+	239	62290933	bvrR	BruAb1_2065	-	BvrR, DNA-binding response regulator
1943	 59.58	0	2030547..2032352	+	601	62290934	bvrS	BruAb1_2066	-	BvrS, sensor histidine kinase
1944	 60.21	0	2032378..2032857	+	159	62290935	-	BruAb1_2067	-	hypothetical protein
1945	 51.81	-1	2032832..2033107	+	91	62290936	-	BruAb1_2068	-	hypothetical protein
1946	 55.22	0	2033109..2033510	+	133	62290937	-	BruAb1_2069	-	PTS system, IIA component
1947	 59.68	0	2033514..2033828	+	104	62290938	ptsH	BruAb1_2070	-	PtsH, phosphocarrier protein HPr
1948	 58.24	0	2034136..2035536	+	466	62290939	ahcY	BruAb1_2072	-	S-adenosyl-L-homocysteine hydrolase
1949	 58.57	0	2035724..2035933	+	69	62290940	-	BruAb1_2073	-	hypothetical protein
1950	 60.54	0	2035921..2038500	+	859	62290941	-	BruAb1_2074	-	sensory box histidine kinase
1951	 59.27	0	2038509..2040050	+	513	62290942	-	BruAb1_2075	-	hypothetical protein
1952	 59.31	0	2040037..2040756	+	239	62290943	-	BruAb1_2076	-	nucleotidyltransferase family protein
1953	 62.93	+1	2040771..2043929	+	1052	62290944	-	BruAb1_2077	-	hypothetical protein
1954	 61.42	+1	2043926..2047468	+	1180	62290945	-	BruAb1_2078	-	UvrD/Rep family helicase
1955	 44.93	-2	2047446..2047583	+	45	62290946	-	BruAb1_2079	-	hypothetical protein
1956	 58.33	0	2047650..2047973	+	107	62290947	trx-1	BruAb1_2080	-	Trx-1, thioredoxin
1957	 59.89	0	2048027..2049355	-	442	62290948	folC	BruAb1_2081	-	FolC, FolC bifunctional protein
1958	 57.28	0	2049358..2050263	-	301	62290949	accD	BruAb1_2082	-	acetyl-CoA carboxylase subunit beta
1959	 58.81	0	2050324..2051163	-	279	62290950	trpA	BruAb1_2083	-	tryptophan synthase subunit alpha
1960	 62.61	+1	2051160..2051627	-	155	62290951	-	BruAb1_2084	-	hypothetical protein
1961	 60.20	0	2051630..2052850	-	406	62290952	trpB	BruAb1_2085	-	tryptophan synthase subunit beta
1962	 58.59	0	2052870..2053538	-	222	62290953	trpF	BruAb1_2086	-	N-(5'-phosphoribosyl)anthranilate isomerase
1963	 57.70	0	2053577..2054212	-	211	62290954	-	BruAb1_2087	-	hypothetical protein
1964	 60.50	0	2054209..2054970	-	253	62290955	-	BruAb1_2088	-	hypothetical protein
1965	 60.23	0	2056871..2057662	-	263	62290956	-	BruAb1_2091	-	hypothetical protein
1966	 55.87	0	2057962..2058498	+	178	62290957	infC	BruAb1_2092	-	translation initiation factor IF-3
1967	 54.63	0	2058627..2059241	+	204	62290958	-	BruAb1_2093	-	nickel-cobalt-cadmium resistance protein
1968	 57.71	0	2059508..2059708	+	66	62290959	rpmI	BruAb1_2094	-	50S ribosomal protein L35
1969	 57.78	0	2059736..2060140	+	134	62290960	rplT	BruAb1_2095	-	50S ribosomal protein L20
1970	 58.13	0	2060239..2061081	+	280	62290961	-	BruAb1_2096	-	hypothetical protein
1971	 59.19	0	2061209..2062318	+	369	62290962	pheS	BruAb1_2097	-	phenylalanyl-tRNA synthetase subunit alpha
1972	 60.37	0	2062340..2064754	+	804	62290963	pheT	BruAb1_2098	-	phenylalanyl-tRNA synthetase subunit beta
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.