IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1833	 54.90	0	1921204..1921407	-	67	62290824	-	BruAb1_1952	-	hypothetical protein
1834	 60.02	0	1921437..1922279	-	280	62290825	-	BruAb1_1953	-	short chain dehydrogenase
1835	 56.68	0	1922437..1923297	+	286	62290826	-	BruAb1_1954	-	ribonuclease BN
1836	 60.70	0	1923315..1923800	+	161	62290827	-	BruAb1_1955	-	hypothetical protein
1837	 58.72	0	1923808..1924524	-	238	62290828	-	BruAb1_1956	-	thiol:disulfide interchange protein
1838	 59.53	0	1924578..1925978	+	466	62290829	argH	BruAb1_1957	-	argininosuccinate lyase
1839	 58.20	0	1926083..1926271	+	62	62290830	-	BruAb1_1958	-	hypothetical protein
1840	 61.06	0	1926299..1927564	+	421	62290831	lysA	BruAb1_1959	-	LysA, diaminopimelate decarboxylase
1841	 61.07	0	1927663..1930323	+	886	62290832	-	BruAb1_1960	-	hypothetical protein
1842	 55.68	0	1930363..1930899	-	178	62290833	hpt	BruAb1_1961	-	hypoxanthine-guanine phosphoribosyltransferase
1843	 62.95	+1	1931048..1931827	+	259	62290834	-	BruAb1_1962	-	hypothetical protein
1844	 59.20	0	1931981..1933078	+	365	62290835	hisC	BruAb1_1963	-	histidinol-phosphate aminotransferase
1845	 60.66	0	1933083..1934048	+	321	62290836	tyrC	BruAb1_1964	-	cyclohexadienyl dehydrogenase
1846	 57.75	0	1934017..1935036	-	339	62290837	-	BruAb1_1965	-	hypothetical protein
1847	 57.93	0	1935248..1935808	+	186	62290838	-	BruAb1_1966	-	cation transport protein
1848	 53.26	0	1936141..1936431	+	96	62290839	-	BruAb1_1967	-	YGGT family protein
1849	 55.18	0	1936602..1937132	-	176	62290840	ppa	BruAb1_1968	-	inorganic pyrophosphatase
1850	 58.75	0	1937285..1938067	-	260	62290841	-	BruAb1_1969	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1851	 55.56	0	1938246..1938884	-	212	62290842	-	BruAb1_1970	-	hypothetical protein
1852	 60.88	0	1939145..1940146	-	333	62290843	-	BruAb1_1971	-	hypothetical protein
1853	 60.15	0	1940139..1940798	-	219	62290844	ftsE	BruAb1_1972	-	FtsE, cell division ABC transporter, ATP-binding protein
1854	 53.01	0	1940803..1940985	-	60	62290845	-	BruAb1_1973	-	hypothetical protein
1855	 55.00	0	1941054..1941473	+	139	62290846	-	BruAb1_1974	-	hypothetical protein
1856	 57.84	0	1941510..1941611	-	33	62290847	-	BruAb1_1975	-	hypothetical protein
1857	 58.52	0	1941857..1942543	+	228	62290848	aqpZ	BruAb1_1976	-	aquaporin Z
1858	 52.27	-1	1942544..1942675	-	43	62290849	-	BruAb1_1977	-	hypothetical protein
1859	 54.98	0	1942927..1943619	+	230	62290850	-	BruAb1_1978	-	hypothetical protein
1860	 58.36	0	1943722..1944528	+	268	62290851	xth-2	BruAb1_1979	-	Xth-2, exodeoxyribonuclease III
1861	 61.90	+1	1944534..1944995	-	153	62290852	-	BruAb1_1980	-	cyclic nucleotide-binding protein
1862	 55.99	0	1945030..1945713	-	227	62290853	-	BruAb1_1981	-	DNA-binding response regulator
1863	 61.90	+1	1945963..1946466	+	167	62290854	-	BruAb1_1982	-	hypothetical protein
1864	 44.00	-2	1946527..1946826	+	99	62290855	-	BruAb1_1983	-	hypothetical protein
1865	 43.33	-2	1948371..1949450	-	359	62290856	-	BruAb1_1985	-	hypothetical protein
1866	 46.15	-2	1949777..1950166	+	129	62290857	-	BruAb1_1986	-	hypothetical protein
1867	 43.42	-2	1950253..1951809	-	518	62290858	-	BruAb1_1987	-	hypothetical protein
1868	 58.63	0	1956910..1957581	-	223	62290859	-	BruAb1_1989	-	hypothetical protein
1869	 59.52	0	1957661..1957954	-	97	62290860	rpmB	BruAb1_1990	-	50S ribosomal protein L28
1870	 55.02	0	1958316..1959131	+	271	62290861	-	BruAb1_1991	-	hypothetical protein
1871	 58.87	0	1959243..1959665	-	140	62290862	-	BruAb1_1992	-	MerR family transcriptional regulator
1872	 60.66	0	1959754..1962168	+	804	62290863	cadA-1	BruAb1_1993	-	CadA-1, cadmium-translocating P-type ATPase
1873	 45.47	-2	1962575..1963324	+	249	62290864	-	BruAb1_1994	-	hypothetical protein
1874	 41.25	-2	1963351..1964436	+	361	62290865	-	BruAb1_1995	-	hypothetical protein
1875	 61.67	+1	1964609..1966510	-	633	62290866	-	BruAb1_1996	-	cobalamin biosynthesis protein
1876	 57.75	0	1966596..1967582	-	328	62290867	-	BruAb1_1997	-	cobalamin biosynthesis protein
1877	 63.93	+1	1967661..1967879	+	72	62290868	-	BruAb1_1998	-	hypothetical protein
1878	 56.83	0	1967857..1968486	-	209	62290869	-	BruAb1_1999	-	DnaJ domain-containing protein
1879	 48.99	-1	1968483..1968680	-	65	62290870	-	BruAb1_2000	-	hypothetical protein
1880	 57.78	0	1968673..1968987	+	104	62290871	bolA	BruAb1_2001	-	BolA, bolA protein
1881	 59.40	0	1969012..1970319	-	435	62290872	-	BruAb1_2002	-	CBS domain-containing protein
1882	 60.25	0	1970383..1971519	-	378	62290873	aroB	BruAb1_2003	-	3-dehydroquinate synthase
1883	 58.21	0	1971612..1972214	-	200	62290874	aroK	BruAb1_2004	-	AroK, shikimate kinase
1884	 54.11	0	1972339..1972545	+	68	62290875	-	BruAb1_2005	-	hypothetical protein
1885	 59.63	0	1972548..1973471	+	307	62290876	xerD	BruAb1_2006	-	site-specific tyrosine recombinase XerD
1886	 59.54	0	1973610..1974563	+	317	62290877	accA	BruAb1_2007	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1887	 58.50	0	1974785..1975996	+	403	62290878	-	BruAb1_2008	-	lipoprotein
1888	 54.65	0	1975975..1976232	+	85	62290879	-	BruAb1_2009	-	hypothetical protein
1889	 59.59	0	1976250..1977422	-	390	62290880	-	BruAb1_2010	-	cobalamin synthesis protein/P47K family protein
1890	 60.75	0	1977424..1978539	-	371	62290881	-	BruAb1_2011	-	D-alanyl-D-alanine carboxypeptidase
1891	 59.54	0	1978834..1979997	+	387	62290882	-	BruAb1_2012	-	M20/M25/M40 family peptidase
1892	 51.85	-1	1979994..1980128	+	44	62290883	-	BruAb1_2013	-	hypothetical protein
1893	 59.08	0	1980196..1980960	-	254	62290884	-	BruAb1_2014	-	glucose 1-dehydrogenase
1894	 50.57	-1	1981068..1981502	+	144	62290885	-	BruAb1_2015	-	hypothetical protein
1895	 45.80	-2	1981652..1981996	+	114	62290886	-	BruAb1_2016	-	hypothetical protein
1896	 58.59	0	1982066..1983700	-	544	62290887	-	BruAb1_2017	-	L-sorbose dehydrogenase
1897	 60.39	0	1983711..1984475	-	254	62290888	fabG	BruAb1_2018	-	3-ketoacyl-(acyl-carrier-protein) reductase
1898	 59.12	0	1984472..1985956	-	494	62290889	-	BruAb1_2019	-	GMC family oxidoreductase
1899	 59.83	0	1985969..1987489	-	506	62290890	-	BruAb1_2020	-	L-sorbosone dehydrogenase, NAD(P) dependent
1900	 61.00	0	1987483..1988259	-	258	62290891	-	BruAb1_2021	-	enoyl-CoA hydratase/isomerase family protein
1901	 59.78	0	1989869..1990870	-	333	62290892	-	BruAb1_2023	-	Gfo/Idh/MocA family oxidoreductase
1902	 58.92	0	1990849..1991907	-	352	62290893	-	BruAb1_2024	-	LacI family transcription regulator
1903	 58.80	0	1992158..1993327	+	389	62290894	-	BruAb1_2025	-	hypothetical protein
1904	 59.43	0	1993361..1994383	-	340	62290895	-	BruAb1_2026	-	luciferase family protein
1905	 55.71	0	1994380..1994589	-	69	62290896	-	BruAb1_2027	-	hypothetical protein
1906	 60.35	0	1994652..1995617	+	321	62290897	-	BruAb1_2028	-	ABC transporter periplasmic substrate-binding protein
1907	 49.81	-1	1995821..1996081	-	86	62290898	-	BruAb1_2029	-	hypothetical protein
1908	 58.64	0	1996261..1997145	+	294	62290899	-	BruAb1_2030	-	branched-chain amino acid ABC transporter, permease protein
1909	 59.50	0	1997142..1997936	+	264	62290900	-	BruAb1_2031	-	ABC transporter, ATP-binding protein
1910	 59.96	0	1998098..1999141	+	347	62290901	holA	BruAb1_2032	-	DNA polymerase III subunit delta
1911	 56.35	0	1999235..2000116	-	293	62290902	parB	BruAb1_2033	-	ParB, chromosome partitioning protein ParB
1912	 54.14	0	2000160..2000957	-	265	62290903	parA	BruAb1_2034	-	ParA, chromosome partitioning protein
1913	 54.52	0	2001010..2001651	-	213	62290904	gidB	BruAb1_2035	-	glucose-inhibited division protein B
1914	 56.78	0	2001648..2003558	-	636	62290905	gidA	BruAb1_2036	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1915	 52.97	0	2003785..2005113	-	442	62290906	trmE	BruAb1_2037	-	tRNA modification GTPase TrmE
1916	 54.87	0	2005228..2007228	+	666	62290907	-	BruAb1_2038	-	hypothetical protein
1917	 55.21	0	2007313..2008578	-	421	62290908	rho	BruAb1_2039	-	transcription termination factor Rho
1918	 53.82	0	2008960..2009496	-	178	62290909	-	BruAb1_2040	-	hypothetical protein
1919	 55.65	0	2009493..2010518	-	341	62290910	hemE	BruAb1_2041	-	uroporphyrinogen decarboxylase
1920	 55.71	0	2010971..2011810	+	279	62290911	-	BruAb1_2042	-	hypothetical protein
1921	 54.67	0	2011807..2012406	+	199	62290912	maf	BruAb1_2043	-	Maf-like protein
1922	 58.39	0	2012399..2013268	+	289	62290913	aroE	BruAb1_2044	-	shikimate 5-dehydrogenase
1923	 57.21	0	2013265..2013867	+	200	62290914	coaE	BruAb1_2045	-	dephospho-CoA kinase
1924	 57.87	0	2013909..2014613	+	234	62290915	dnaQ	BruAb1_2046	-	DNA polymerase III subunit epsilon
1925	 56.91	0	2014671..2015162	-	163	62290916	secB	BruAb1_2047	-	preprotein translocase subunit SecB
1926	 59.64	0	2015282..2015779	-	165	62290917	fxsA	BruAb1_2048	-	FxsA
1927	 55.32	0	2015996..2016691	+	231	62290918	-	BruAb1_2049	-	hypothetical protein
1928	 60.09	0	2016755..2017864	+	369	62290919	-	BruAb1_2050	-	transglycosylase-related protein
1929	 63.18	+1	2017870..2018472	+	200	62290920	-	BruAb1_2051	-	Smr family protein
1930	 58.01	0	2018469..2018849	+	126	62290921	-	BruAb1_2052	-	hypothetical protein
1931	 56.45	0	2018858..2019787	-	309	62290922	-	BruAb1_2053	-	hypothetical protein
1932	 59.77	0	2020024..2021328	-	434	62290923	hslU	BruAb1_2054	-	ATP-dependent protease ATP-binding subunit
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.