IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1800	 56.21	0	1886762..1887067	-	101	62290791	-	BruAb1_1914	-	hypothetical protein
1801	 59.71	0	1887180..1887596	-	138	62290792	-	BruAb1_1915	-	mutator MutT protein
1802	 59.60	0	1887593..1888384	-	263	62290793	-	BruAb1_1916	-	acetyltransferase
1803	 60.95	0	1888442..1889683	-	413	62290794	argJ	BruAb1_1917	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1804	 51.96	-1	1889917..1890018	-	33	62290795	-	BruAb1_1918	-	hypothetical protein
1805	 58.03	0	1890121..1891116	-	331	62290796	-	BruAb1_1919	-	peptidyl-prolyl cis-trans isomerase
1806	 47.62	-2	1891244..1891411	-	55	62290797	-	BruAb1_1920	-	hypothetical protein
1807	 58.58	0	1891455..1894175	+	906	62290798	secA	BruAb1_1921	-	preprotein translocase subunit SecA
1808	 46.10	-2	1894203..1894343	+	46	62290799	-	BruAb1_1922	-	hypothetical protein
1809	 59.05	0	1894685..1895971	+	428	62290800	-	BruAb1_1923	-	hypothetical protein
1810	 46.08	-2	1898113..1898214	+	33	62290801	-	BruAb1_1925	-	hypothetical protein
1811	 53.73	0	1898607..1898807	-	66	62290802	-	BruAb1_1926	-	hypothetical protein
1812	 59.04	0	1898928..1899911	-	327	62290803	-	BruAb1_1927	-	LysR family transcriptional regulator
1813	 42.47	-2	1899951..1900136	-	61	62290804	-	BruAb1_1928	-	hypothetical protein
1814	 58.04	0	1900202..1901047	+	281	62290805	-	BruAb1_1929	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1815	 58.09	0	1901837..1902559	+	240	62290806	-	BruAb1_1931	-	amino acid ABC transporter, permease protein
1816	 59.68	0	1902556..1903371	+	271	62290807	-	BruAb1_1932	-	amino acid ABC transporter, ATP-binding protein
1817	 60.26	0	1903392..1904405	+	337	62290808	-	BruAb1_1933	-	arginase family protein
1818	 58.40	0	1904414..1905865	+	483	62290809	aspA	BruAb1_1934	-	aspartate ammonia-lyase
1819	 57.41	0	1905849..1906604	+	251	62290810	-	BruAb1_1935	-	amino acid ABC transporter, ATP-binding protein
1820	 58.86	0	1906613..1907611	+	332	62290811	-	BruAb1_1936	-	L-asparaginase type II
1821	 51.90	-1	1907748..1908431	-	227	62290812	-	BruAb1_1937	-	GntR family transcriptional regulator
1822	 54.13	0	1909521..1910828	+	435	62290813	-	BruAb1_1939	-	major facilitator family transporter
1823	 56.21	0	1911315..1911467	-	50	62290814	-	BruAb1_1940	-	hypothetical protein
1824	 58.96	0	1911514..1912797	-	427	62290815	-	BruAb1_1941	-	methionine gamma-lyase
1825	 57.78	0	1912977..1913426	-	149	62290816	-	BruAb1_1942	-	universal stress protein
1826	 57.31	0	1915148..1916023	-	291	62290817	hbd	BruAb1_1945	-	3-hydroxybutyryl-CoA dehydrogenase
1827	 60.65	0	1916496..1917425	-	309	62290818	etfA	BruAb1_1946	-	EtfA, electron transfer flavoprotein, alpha subunit
1828	 58.10	0	1917578..1918324	-	248	62290819	etfB	BruAb1_1947	-	EtfB, electron transfer flavoprotein, beta subunit
1829	 59.37	0	1918660..1919358	+	232	62290820	-	BruAb1_1948	-	exsB protein
1830	 56.28	0	1919358..1919723	+	121	62290821	-	BruAb1_1949	-	6-pyruvoyl tetrahydrobiopterin synthase
1831	 58.07	0	1919723..1920478	+	251	62290822	-	BruAb1_1950	-	radical activating protein
1832	 60.71	0	1920615..1921202	-	195	62290823	-	BruAb1_1951	-	ATP:cob(I)alamin adenosyltransferase
1833	 54.90	0	1921204..1921407	-	67	62290824	-	BruAb1_1952	-	hypothetical protein
1834	 60.02	0	1921437..1922279	-	280	62290825	-	BruAb1_1953	-	short chain dehydrogenase
1835	 56.68	0	1922437..1923297	+	286	62290826	-	BruAb1_1954	-	ribonuclease BN
1836	 60.70	0	1923315..1923800	+	161	62290827	-	BruAb1_1955	-	hypothetical protein
1837	 58.72	0	1923808..1924524	-	238	62290828	-	BruAb1_1956	-	thiol:disulfide interchange protein
1838	 59.53	0	1924578..1925978	+	466	62290829	argH	BruAb1_1957	-	argininosuccinate lyase
1839	 58.20	0	1926083..1926271	+	62	62290830	-	BruAb1_1958	-	hypothetical protein
1840	 61.06	0	1926299..1927564	+	421	62290831	lysA	BruAb1_1959	-	LysA, diaminopimelate decarboxylase
1841	 61.07	0	1927663..1930323	+	886	62290832	-	BruAb1_1960	-	hypothetical protein
1842	 55.68	0	1930363..1930899	-	178	62290833	hpt	BruAb1_1961	-	hypoxanthine-guanine phosphoribosyltransferase
1843	 62.95	+1	1931048..1931827	+	259	62290834	-	BruAb1_1962	-	hypothetical protein
1844	 59.20	0	1931981..1933078	+	365	62290835	hisC	BruAb1_1963	-	histidinol-phosphate aminotransferase
1845	 60.66	0	1933083..1934048	+	321	62290836	tyrC	BruAb1_1964	-	cyclohexadienyl dehydrogenase
1846	 57.75	0	1934017..1935036	-	339	62290837	-	BruAb1_1965	-	hypothetical protein
1847	 57.93	0	1935248..1935808	+	186	62290838	-	BruAb1_1966	-	cation transport protein
1848	 53.26	0	1936141..1936431	+	96	62290839	-	BruAb1_1967	-	YGGT family protein
1849	 55.18	0	1936602..1937132	-	176	62290840	ppa	BruAb1_1968	-	inorganic pyrophosphatase
1850	 58.75	0	1937285..1938067	-	260	62290841	-	BruAb1_1969	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1851	 55.56	0	1938246..1938884	-	212	62290842	-	BruAb1_1970	-	hypothetical protein
1852	 60.88	0	1939145..1940146	-	333	62290843	-	BruAb1_1971	-	hypothetical protein
1853	 60.15	0	1940139..1940798	-	219	62290844	ftsE	BruAb1_1972	-	FtsE, cell division ABC transporter, ATP-binding protein
1854	 53.01	0	1940803..1940985	-	60	62290845	-	BruAb1_1973	-	hypothetical protein
1855	 55.00	0	1941054..1941473	+	139	62290846	-	BruAb1_1974	-	hypothetical protein
1856	 57.84	0	1941510..1941611	-	33	62290847	-	BruAb1_1975	-	hypothetical protein
1857	 58.52	0	1941857..1942543	+	228	62290848	aqpZ	BruAb1_1976	-	aquaporin Z
1858	 52.27	-1	1942544..1942675	-	43	62290849	-	BruAb1_1977	-	hypothetical protein
1859	 54.98	0	1942927..1943619	+	230	62290850	-	BruAb1_1978	-	hypothetical protein
1860	 58.36	0	1943722..1944528	+	268	62290851	xth-2	BruAb1_1979	-	Xth-2, exodeoxyribonuclease III
1861	 61.90	+1	1944534..1944995	-	153	62290852	-	BruAb1_1980	-	cyclic nucleotide-binding protein
1862	 55.99	0	1945030..1945713	-	227	62290853	-	BruAb1_1981	-	DNA-binding response regulator
1863	 61.90	+1	1945963..1946466	+	167	62290854	-	BruAb1_1982	-	hypothetical protein
1864	 44.00	-2	1946527..1946826	+	99	62290855	-	BruAb1_1983	-	hypothetical protein
1865	 43.33	-2	1948371..1949450	-	359	62290856	-	BruAb1_1985	-	hypothetical protein
1866	 46.15	-2	1949777..1950166	+	129	62290857	-	BruAb1_1986	-	hypothetical protein
1867	 43.42	-2	1950253..1951809	-	518	62290858	-	BruAb1_1987	-	hypothetical protein
1868	 58.63	0	1956910..1957581	-	223	62290859	-	BruAb1_1989	-	hypothetical protein
1869	 59.52	0	1957661..1957954	-	97	62290860	rpmB	BruAb1_1990	-	50S ribosomal protein L28
1870	 55.02	0	1958316..1959131	+	271	62290861	-	BruAb1_1991	-	hypothetical protein
1871	 58.87	0	1959243..1959665	-	140	62290862	-	BruAb1_1992	-	MerR family transcriptional regulator
1872	 60.66	0	1959754..1962168	+	804	62290863	cadA-1	BruAb1_1993	-	CadA-1, cadmium-translocating P-type ATPase
1873	 45.47	-2	1962575..1963324	+	249	62290864	-	BruAb1_1994	-	hypothetical protein
1874	 41.25	-2	1963351..1964436	+	361	62290865	-	BruAb1_1995	-	hypothetical protein
1875	 61.67	+1	1964609..1966510	-	633	62290866	-	BruAb1_1996	-	cobalamin biosynthesis protein
1876	 57.75	0	1966596..1967582	-	328	62290867	-	BruAb1_1997	-	cobalamin biosynthesis protein
1877	 63.93	+1	1967661..1967879	+	72	62290868	-	BruAb1_1998	-	hypothetical protein
1878	 56.83	0	1967857..1968486	-	209	62290869	-	BruAb1_1999	-	DnaJ domain-containing protein
1879	 48.99	-1	1968483..1968680	-	65	62290870	-	BruAb1_2000	-	hypothetical protein
1880	 57.78	0	1968673..1968987	+	104	62290871	bolA	BruAb1_2001	-	BolA, bolA protein
1881	 59.40	0	1969012..1970319	-	435	62290872	-	BruAb1_2002	-	CBS domain-containing protein
1882	 60.25	0	1970383..1971519	-	378	62290873	aroB	BruAb1_2003	-	3-dehydroquinate synthase
1883	 58.21	0	1971612..1972214	-	200	62290874	aroK	BruAb1_2004	-	AroK, shikimate kinase
1884	 54.11	0	1972339..1972545	+	68	62290875	-	BruAb1_2005	-	hypothetical protein
1885	 59.63	0	1972548..1973471	+	307	62290876	xerD	BruAb1_2006	-	site-specific tyrosine recombinase XerD
1886	 59.54	0	1973610..1974563	+	317	62290877	accA	BruAb1_2007	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1887	 58.50	0	1974785..1975996	+	403	62290878	-	BruAb1_2008	-	lipoprotein
1888	 54.65	0	1975975..1976232	+	85	62290879	-	BruAb1_2009	-	hypothetical protein
1889	 59.59	0	1976250..1977422	-	390	62290880	-	BruAb1_2010	-	cobalamin synthesis protein/P47K family protein
1890	 60.75	0	1977424..1978539	-	371	62290881	-	BruAb1_2011	-	D-alanyl-D-alanine carboxypeptidase
1891	 59.54	0	1978834..1979997	+	387	62290882	-	BruAb1_2012	-	M20/M25/M40 family peptidase
1892	 51.85	-1	1979994..1980128	+	44	62290883	-	BruAb1_2013	-	hypothetical protein
1893	 59.08	0	1980196..1980960	-	254	62290884	-	BruAb1_2014	-	glucose 1-dehydrogenase
1894	 50.57	-1	1981068..1981502	+	144	62290885	-	BruAb1_2015	-	hypothetical protein
1895	 45.80	-2	1981652..1981996	+	114	62290886	-	BruAb1_2016	-	hypothetical protein
1896	 58.59	0	1982066..1983700	-	544	62290887	-	BruAb1_2017	-	L-sorbose dehydrogenase
1897	 60.39	0	1983711..1984475	-	254	62290888	fabG	BruAb1_2018	-	3-ketoacyl-(acyl-carrier-protein) reductase
1898	 59.12	0	1984472..1985956	-	494	62290889	-	BruAb1_2019	-	GMC family oxidoreductase
1899	 59.83	0	1985969..1987489	-	506	62290890	-	BruAb1_2020	-	L-sorbosone dehydrogenase, NAD(P) dependent
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.