IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1733	 60.32	0	1816258..1816383	+	41	62290724	-	BruAb1_1842	-	hypothetical protein
1734	 58.78	0	1816883..1819507	-	874	62290725	clpB	BruAb1_1843	-	ClpB, ATP-dependent Clp protease, ATP-binding subunit ClpB
1735	 62.85	+1	1819706..1820464	-	252	62290726	-	BruAb1_1844	-	hypothetical protein
1736	 50.55	-1	1820445..1820717	-	90	62290727	-	BruAb1_1845	-	hypothetical protein
1737	 49.66	-1	1820779..1820925	+	48	62290728	-	BruAb1_1846	-	hypothetical protein
1738	 58.08	0	1820909..1821781	-	290	62290729	hemK	BruAb1_1847	-	hypothetical protein
1739	 60.09	0	1821793..1822872	-	359	62290730	prfA	BruAb1_1848	-	peptide chain release factor 1
1740	 60.37	0	1823069..1825339	-	756	62290731	ptsP	BruAb1_1849	-	PtsP, phosphoenolpyruvate-protein phosphotransferase
1741	 59.28	0	1825667..1826938	-	423	62290732	-	BruAb1_1850	-	aspartate kinase
1742	 59.29	0	1827852..1828787	-	311	62290733	-	BruAb1_1852	-	hypothetical protein
1743	 55.87	0	1828827..1829252	-	141	62290734	-	BruAb1_1853	-	hypothetical protein
1744	 59.77	0	1829258..1830112	-	284	62290735	-	BruAb1_1854	-	carbon-nitrogen hydrolase family protein
1745	 56.55	0	1830123..1830389	-	88	62290736	grxC	BruAb1_1855	-	GrxC, glutaredoxin 3
1746	 61.72	+1	1830473..1831261	-	262	62290737	-	BruAb1_1856	-	competence protein F
1747	 62.53	+1	1831444..1832337	+	297	62290738	-	BruAb1_1857	-	hypothetical protein
1748	 59.89	0	1832476..1833714	+	412	62290739	-	BruAb1_1858	-	hypothetical protein
1749	 50.54	-1	1834496..1834588	+	30	62290740	-	BruAb1_1860	-	hypothetical protein
1750	 62.09	+1	1834635..1836206	-	523	62290741	-	BruAb1_1861	-	hypothetical protein
1751	 62.09	+1	1836219..1837595	-	458	62290742	-	BruAb1_1862	-	hypothetical protein
1752	 58.76	0	1837678..1838385	-	235	62290743	hemD	BruAb1_1863	-	uroporphyrinogen-III synthase
1753	 62.65	+1	1838409..1839353	-	314	62290744	hemC	BruAb1_1864	-	porphobilinogen deaminase
1754	 63.52	+1	1839472..1840551	+	359	62290745	gcp	BruAb1_1865	-	O-sialoglycoprotein endopeptidase
1755	 62.39	+1	1840548..1841528	+	326	62290746	gpsA	BruAb1_1866	-	GpsA, glycerol-3-phosphate dehydrogenase, NAD-dependent
1756	 60.48	0	1841530..1841820	+	96	62290747	-	BruAb1_1867	-	YciI-like protein
1757	 58.04	0	1841833..1842261	+	142	62290748	-	BruAb1_1868	-	hypothetical protein
1758	 58.90	0	1842261..1842917	+	218	62290749	-	BruAb1_1869	-	hypothetical protein
1759	 61.54	+1	1842963..1843820	-	285	62290750	-	BruAb1_1870	-	hypothetical protein
1760	 62.13	+1	1843975..1845429	+	484	62290751	-	BruAb1_1871	-	GntR family transcriptional regulator
1761	 61.13	0	1845491..1848055	-	854	62290752	-	BruAb1_1872	-	cell division protein FtsK
1762	 58.99	0	1848265..1849566	-	433	62290753	amt	BruAb1_1873	-	Amt, ammonium transporter
1763	 59.80	0	1849789..1850691	-	300	62290754	tesB	BruAb1_1874	-	TesB, acyl-CoA thioesterase II
1764	 62.41	+1	1850911..1852155	+	414	62290755	-	BruAb1_1875	-	2-octaprenyl-6-methoxyphenyl hydroxylase
1765	 56.18	0	1852241..1852612	-	123	62290756	-	BruAb1_1876	-	glyoxalase family protein
1766	 57.05	0	1852981..1853760	-	259	62290757	sdhB	BruAb1_1877	-	succinate dehydrogenase iron-sulfur subunit
1767	 61.73	+1	1853776..1855617	-	613	62290758	sdhA	BruAb1_1878	-	succinate dehydrogenase flavoprotein subunit
1768	 54.29	0	1855625..1856020	-	131	62290759	-	BruAb1_1879	-	succinate dehydrogenase, hydrophobic membrane anchor protein
1769	 59.40	0	1856034..1856432	-	132	62290760	sdhC	BruAb1_1880	-	SdhC, succinate dehydrogenase, cytochrome b556 subunit
1770	 57.08	0	1856777..1857235	-	152	62290761	-	BruAb1_1881	-	acetyltransferase
1771	 60.43	0	1857492..1858901	-	469	62290762	leuC	BruAb1_1882	-	isopropylmalate isomerase large subunit
1772	 58.68	0	1859112..1859549	-	145	62290763	rplS	BruAb1_1883	-	50S ribosomal protein L19
1773	 59.12	0	1861703..1862113	-	136	62290764	-	BruAb1_1886	-	hypothetical protein
1774	 59.23	0	1862106..1862468	-	120	62290765	-	BruAb1_1887	-	hypothetical protein
1775	 55.56	0	1862465..1862788	-	107	62290766	-	BruAb1_1888	-	hypothetical protein
1776	 59.16	0	1862859..1863524	+	221	62290767	-	BruAb1_1889	-	ArsR family transcriptional regulator
1777	 61.50	+1	1863659..1864393	-	244	62290768	trmD	BruAb1_1890	-	tRNA (guanine-N(1)-)-methyltransferase
1778	 57.89	0	1864390..1864959	-	189	62290769	rimM	BruAb1_1891	-	16S rRNA-processing protein
1779	 62.76	+1	1865183..1866130	+	315	62290770	xerC	BruAb1_1892	-	site-specific tyrosine recombinase XerC
1780	 56.49	0	1866184..1867185	+	333	62290771	-	BruAb1_1893	-	hypothetical protein
1781	 58.40	0	1867389..1868792	-	467	62290772	lpdA-2	BruAb1_1894	-	dihydrolipoamide dehydrogenase
1782	 53.96	0	1868961..1869503	-	180	62290773	-	BruAb1_1895	-	hypothetical protein
1783	 55.56	0	1869574..1870212	-	212	62290774	-	BruAb1_1896	-	amino acid transporter LysE
1784	 59.66	0	1870254..1870667	-	137	62290775	-	BruAb1_1897	-	hypothetical protein
1785	 61.45	+1	1870677..1871903	-	408	62290776	sucB	BruAb1_1898	-	dihydrolipoamide acetyltransferase
1786	 59.34	0	1871965..1874979	-	1004	62290777	kgd	BruAb1_1899	-	alpha-ketoglutarate decarboxylase
1787	 55.30	0	1875116..1875247	+	43	62290778	-	BruAb1_1900	-	hypothetical protein
1788	 60.58	0	1875257..1876159	-	300	62290779	sucD	BruAb1_1901	-	succinyl-CoA synthetase subunit alpha
1789	 57.64	0	1876163..1877359	-	398	62290780	sucC	BruAb1_1902	-	succinyl-CoA synthetase subunit beta
1790	 61.37	+1	1877466..1878428	-	320	62290781	mdh	BruAb1_1903	-	malate dehydrogenase
1791	 51.85	-1	1878548..1878790	-	80	62290782	-	BruAb1_1904	-	hypothetical protein
1792	 57.82	0	1878896..1880059	-	387	62290783	-	BruAb1_1905	-	hypothetical protein
1793	 63.48	+1	1880179..1880712	-	177	62290784	omp19	BruAb1_1906	-	Omp19, lipoprotein Omp19
1794	 50.49	-1	1880842..1881045	-	67	62290785	-	BruAb1_1907	-	hypothetical protein
1795	 63.27	+1	1881076..1881987	+	303	62290786	dapF	BruAb1_1908	-	diaminopimelate epimerase
1796	 60.12	0	1881987..1883270	+	427	62290787	-	BruAb1_1909	-	hypothetical protein
1797	 60.92	0	1883298..1884689	+	463	62290788	ftsY	BruAb1_1910	-	FtsY, signal recognition particle-docking protein
1798	 56.26	0	1884689..1885351	+	220	62290789	ispZ	BruAb1_1911	-	intracellular septation protein A
1799	 58.27	0	1885384..1886157	+	257	62290790	-	BruAb1_1912	-	hydroxyacylglutathione hydrolase
1800	 56.21	0	1886762..1887067	-	101	62290791	-	BruAb1_1914	-	hypothetical protein
1801	 59.71	0	1887180..1887596	-	138	62290792	-	BruAb1_1915	-	mutator MutT protein
1802	 59.60	0	1887593..1888384	-	263	62290793	-	BruAb1_1916	-	acetyltransferase
1803	 60.95	0	1888442..1889683	-	413	62290794	argJ	BruAb1_1917	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1804	 51.96	-1	1889917..1890018	-	33	62290795	-	BruAb1_1918	-	hypothetical protein
1805	 58.03	0	1890121..1891116	-	331	62290796	-	BruAb1_1919	-	peptidyl-prolyl cis-trans isomerase
1806	 47.62	-2	1891244..1891411	-	55	62290797	-	BruAb1_1920	-	hypothetical protein
1807	 58.58	0	1891455..1894175	+	906	62290798	secA	BruAb1_1921	-	preprotein translocase subunit SecA
1808	 46.10	-2	1894203..1894343	+	46	62290799	-	BruAb1_1922	-	hypothetical protein
1809	 59.05	0	1894685..1895971	+	428	62290800	-	BruAb1_1923	-	hypothetical protein
1810	 46.08	-2	1898113..1898214	+	33	62290801	-	BruAb1_1925	-	hypothetical protein
1811	 53.73	0	1898607..1898807	-	66	62290802	-	BruAb1_1926	-	hypothetical protein
1812	 59.04	0	1898928..1899911	-	327	62290803	-	BruAb1_1927	-	LysR family transcriptional regulator
1813	 42.47	-2	1899951..1900136	-	61	62290804	-	BruAb1_1928	-	hypothetical protein
1814	 58.04	0	1900202..1901047	+	281	62290805	-	BruAb1_1929	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1815	 58.09	0	1901837..1902559	+	240	62290806	-	BruAb1_1931	-	amino acid ABC transporter, permease protein
1816	 59.68	0	1902556..1903371	+	271	62290807	-	BruAb1_1932	-	amino acid ABC transporter, ATP-binding protein
1817	 60.26	0	1903392..1904405	+	337	62290808	-	BruAb1_1933	-	arginase family protein
1818	 58.40	0	1904414..1905865	+	483	62290809	aspA	BruAb1_1934	-	aspartate ammonia-lyase
1819	 57.41	0	1905849..1906604	+	251	62290810	-	BruAb1_1935	-	amino acid ABC transporter, ATP-binding protein
1820	 58.86	0	1906613..1907611	+	332	62290811	-	BruAb1_1936	-	L-asparaginase type II
1821	 51.90	-1	1907748..1908431	-	227	62290812	-	BruAb1_1937	-	GntR family transcriptional regulator
1822	 54.13	0	1909521..1910828	+	435	62290813	-	BruAb1_1939	-	major facilitator family transporter
1823	 56.21	0	1911315..1911467	-	50	62290814	-	BruAb1_1940	-	hypothetical protein
1824	 58.96	0	1911514..1912797	-	427	62290815	-	BruAb1_1941	-	methionine gamma-lyase
1825	 57.78	0	1912977..1913426	-	149	62290816	-	BruAb1_1942	-	universal stress protein
1826	 57.31	0	1915148..1916023	-	291	62290817	hbd	BruAb1_1945	-	3-hydroxybutyryl-CoA dehydrogenase
1827	 60.65	0	1916496..1917425	-	309	62290818	etfA	BruAb1_1946	-	EtfA, electron transfer flavoprotein, alpha subunit
1828	 58.10	0	1917578..1918324	-	248	62290819	etfB	BruAb1_1947	-	EtfB, electron transfer flavoprotein, beta subunit
1829	 59.37	0	1918660..1919358	+	232	62290820	-	BruAb1_1948	-	exsB protein
1830	 56.28	0	1919358..1919723	+	121	62290821	-	BruAb1_1949	-	6-pyruvoyl tetrahydrobiopterin synthase
1831	 58.07	0	1919723..1920478	+	251	62290822	-	BruAb1_1950	-	radical activating protein
1832	 60.71	0	1920615..1921202	-	195	62290823	-	BruAb1_1951	-	ATP:cob(I)alamin adenosyltransferase
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.