IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1692	 58.10	0	1772295..1772936	-	213	62290683	-	BruAb1_1799	-	hypothetical protein
1693	 58.59	0	1772949..1773716	-	255	62290684	-	BruAb1_1800	-	hypothetical protein
1694	 55.93	0	1773797..1774420	-	207	62290685	lemA	BruAb1_1801	-	hypothetical protein
1695	 52.30	-1	1774417..1774590	-	57	62290686	-	BruAb1_1802	-	hypothetical protein
1696	 62.22	+1	1774690..1775094	-	134	62290687	rpsP	BruAb1_1803	-	30S ribosomal protein S16
1697	 58.41	0	1775161..1775475	-	104	62290688	-	BruAb1_1804	-	chorismate mutase
1698	 60.18	0	1775481..1777052	-	523	62290689	ffh	BruAb1_1805	-	Ffh, signal recognition particle protein
1699	 54.57	0	1777176..1777547	+	123	62290690	-	BruAb1_1806	-	hypothetical protein
1700	 59.90	0	1777487..1778314	+	275	62290691	-	BruAb1_1807	-	lytic murein transglycosylase
1701	 61.87	+1	1779194..1780090	-	298	62290692	-	BruAb1_1809	-	pyridoxamine kinase
1702	 64.24	+1	1780092..1780379	-	95	62290693	-	BruAb1_1810	-	hypothetical protein
1703	 60.32	0	1780752..1782248	-	498	62290694	mmsA	BruAb1_1811	-	MmsA, methylmalonic acid semialdehyde dehydrogenase
1704	 62.03	+1	1782376..1783281	+	301	62290695	-	BruAb1_1812	-	LysR family transcriptional regulator
1705	 60.16	0	1783597..1784241	-	214	62290696	-	BruAb1_1813	-	hypothetical protein
1706	 58.78	0	1784235..1784627	+	130	62290697	-	BruAb1_1814	-	hypothetical protein
1707	 60.15	0	1784679..1785215	-	178	62290698	ialA	BruAb1_1815	-	dinucleoside polyphosphate hydrolase
1708	 58.92	0	1785452..1786780	-	442	62290699	-	BruAb1_1816	-	carboxyl-terminal protease
1709	 59.48	0	1786770..1788119	-	449	62290700	-	BruAb1_1817	-	hypothetical protein
1710	 57.11	0	1788232..1789131	-	299	62290701	-	BruAb1_1818	-	hypothetical protein
1711	 62.75	+1	1789249..1789758	-	169	62290702	-	BruAb1_1819	-	SPOUT methyltransferase superfamily protein
1712	 56.97	0	1789777..1790199	-	140	62290703	-	BruAb1_1820	-	iojap-related protein
1713	 60.17	0	1790311..1790895	-	194	62290704	nadD	BruAb1_1821	-	nicotinic acid mononucleotide adenylyltransferase
1714	 61.37	+1	1790985..1792250	-	421	62290705	proA	BruAb1_1822	-	gamma-glutamyl phosphate reductase
1715	 60.16	0	1792278..1793414	-	378	62290706	proB	BruAb1_1823	-	gamma-glutamyl kinase
1716	 59.36	0	1793442..1794467	-	341	62290707	obgE	BruAb1_1824	-	GTPase ObgE
1717	 51.20	-1	1794723..1795433	-	236	62290708	-	BruAb1_1825	-	hypothetical protein
1718	 57.17	0	1795838..1796395	-	185	62290709	-	BruAb1_1826	-	acetyltransferase
1719	 57.60	0	1796449..1797099	-	216	62290710	-	BruAb1_1827	-	acetyltransferase
1720	 57.78	0	1797220..1797489	-	89	62290711	rpmA	BruAb1_1828	-	50S ribosomal protein L27
1721	 61.07	0	1797515..1797943	-	142	62290712	rplU	BruAb1_1829	-	50S ribosomal protein L21
1722	 48.03	-2	1798653..1799339	+	228	62290713	-	BruAb1_1830	-	IS2020 transposase
1723	 52.74	-1	1799556..1801508	+	650	62290714	-	BruAb1_1831	-	Cro/CI family transcriptional regulator
1724	 51.85	-1	1801505..1802179	+	224	62290715	-	BruAb1_1832	-	AzlC family protein
1725	 49.85	-1	1802179..1802517	+	112	62290716	-	BruAb1_1833	-	hypothetical protein
1726	 48.03	-2	1802738..1803424	-	228	62290717	-	BruAb1_1835	-	IS2020 transposase
1727	 50.35	-1	1803535..1804974	-	479	62290718	-	BruAb1_1836	-	hypothetical protein
1728	 50.22	-1	1805150..1805824	-	224	62290719	-	BruAb1_1837	-	hypothetical protein
1729	 54.76	0	1806142..1806309	+	55	62290720	-	BruAb1_1838	-	hypothetical protein
1730	 42.80	-2	1809803..1810045	+	80	62290721	-	BruAb1_1839	-	hypothetical protein
1731	 59.05	0	1812960..1814915	+	651	62290722	-	BruAb1_1840	-	M24/M37 family peptidase
1732	 59.09	0	1814983..1816209	-	408	62290723	-	BruAb1_1841	-	hypothetical protein
1733	 60.32	0	1816258..1816383	+	41	62290724	-	BruAb1_1842	-	hypothetical protein
1734	 58.78	0	1816883..1819507	-	874	62290725	clpB	BruAb1_1843	-	ClpB, ATP-dependent Clp protease, ATP-binding subunit ClpB
1735	 62.85	+1	1819706..1820464	-	252	62290726	-	BruAb1_1844	-	hypothetical protein
1736	 50.55	-1	1820445..1820717	-	90	62290727	-	BruAb1_1845	-	hypothetical protein
1737	 49.66	-1	1820779..1820925	+	48	62290728	-	BruAb1_1846	-	hypothetical protein
1738	 58.08	0	1820909..1821781	-	290	62290729	hemK	BruAb1_1847	-	hypothetical protein
1739	 60.09	0	1821793..1822872	-	359	62290730	prfA	BruAb1_1848	-	peptide chain release factor 1
1740	 60.37	0	1823069..1825339	-	756	62290731	ptsP	BruAb1_1849	-	PtsP, phosphoenolpyruvate-protein phosphotransferase
1741	 59.28	0	1825667..1826938	-	423	62290732	-	BruAb1_1850	-	aspartate kinase
1742	 59.29	0	1827852..1828787	-	311	62290733	-	BruAb1_1852	-	hypothetical protein
1743	 55.87	0	1828827..1829252	-	141	62290734	-	BruAb1_1853	-	hypothetical protein
1744	 59.77	0	1829258..1830112	-	284	62290735	-	BruAb1_1854	-	carbon-nitrogen hydrolase family protein
1745	 56.55	0	1830123..1830389	-	88	62290736	grxC	BruAb1_1855	-	GrxC, glutaredoxin 3
1746	 61.72	+1	1830473..1831261	-	262	62290737	-	BruAb1_1856	-	competence protein F
1747	 62.53	+1	1831444..1832337	+	297	62290738	-	BruAb1_1857	-	hypothetical protein
1748	 59.89	0	1832476..1833714	+	412	62290739	-	BruAb1_1858	-	hypothetical protein
1749	 50.54	-1	1834496..1834588	+	30	62290740	-	BruAb1_1860	-	hypothetical protein
1750	 62.09	+1	1834635..1836206	-	523	62290741	-	BruAb1_1861	-	hypothetical protein
1751	 62.09	+1	1836219..1837595	-	458	62290742	-	BruAb1_1862	-	hypothetical protein
1752	 58.76	0	1837678..1838385	-	235	62290743	hemD	BruAb1_1863	-	uroporphyrinogen-III synthase
1753	 62.65	+1	1838409..1839353	-	314	62290744	hemC	BruAb1_1864	-	porphobilinogen deaminase
1754	 63.52	+1	1839472..1840551	+	359	62290745	gcp	BruAb1_1865	-	O-sialoglycoprotein endopeptidase
1755	 62.39	+1	1840548..1841528	+	326	62290746	gpsA	BruAb1_1866	-	GpsA, glycerol-3-phosphate dehydrogenase, NAD-dependent
1756	 60.48	0	1841530..1841820	+	96	62290747	-	BruAb1_1867	-	YciI-like protein
1757	 58.04	0	1841833..1842261	+	142	62290748	-	BruAb1_1868	-	hypothetical protein
1758	 58.90	0	1842261..1842917	+	218	62290749	-	BruAb1_1869	-	hypothetical protein
1759	 61.54	+1	1842963..1843820	-	285	62290750	-	BruAb1_1870	-	hypothetical protein
1760	 62.13	+1	1843975..1845429	+	484	62290751	-	BruAb1_1871	-	GntR family transcriptional regulator
1761	 61.13	0	1845491..1848055	-	854	62290752	-	BruAb1_1872	-	cell division protein FtsK
1762	 58.99	0	1848265..1849566	-	433	62290753	amt	BruAb1_1873	-	Amt, ammonium transporter
1763	 59.80	0	1849789..1850691	-	300	62290754	tesB	BruAb1_1874	-	TesB, acyl-CoA thioesterase II
1764	 62.41	+1	1850911..1852155	+	414	62290755	-	BruAb1_1875	-	2-octaprenyl-6-methoxyphenyl hydroxylase
1765	 56.18	0	1852241..1852612	-	123	62290756	-	BruAb1_1876	-	glyoxalase family protein
1766	 57.05	0	1852981..1853760	-	259	62290757	sdhB	BruAb1_1877	-	succinate dehydrogenase iron-sulfur subunit
1767	 61.73	+1	1853776..1855617	-	613	62290758	sdhA	BruAb1_1878	-	succinate dehydrogenase flavoprotein subunit
1768	 54.29	0	1855625..1856020	-	131	62290759	-	BruAb1_1879	-	succinate dehydrogenase, hydrophobic membrane anchor protein
1769	 59.40	0	1856034..1856432	-	132	62290760	sdhC	BruAb1_1880	-	SdhC, succinate dehydrogenase, cytochrome b556 subunit
1770	 57.08	0	1856777..1857235	-	152	62290761	-	BruAb1_1881	-	acetyltransferase
1771	 60.43	0	1857492..1858901	-	469	62290762	leuC	BruAb1_1882	-	isopropylmalate isomerase large subunit
1772	 58.68	0	1859112..1859549	-	145	62290763	rplS	BruAb1_1883	-	50S ribosomal protein L19
1773	 59.12	0	1861703..1862113	-	136	62290764	-	BruAb1_1886	-	hypothetical protein
1774	 59.23	0	1862106..1862468	-	120	62290765	-	BruAb1_1887	-	hypothetical protein
1775	 55.56	0	1862465..1862788	-	107	62290766	-	BruAb1_1888	-	hypothetical protein
1776	 59.16	0	1862859..1863524	+	221	62290767	-	BruAb1_1889	-	ArsR family transcriptional regulator
1777	 61.50	+1	1863659..1864393	-	244	62290768	trmD	BruAb1_1890	-	tRNA (guanine-N(1)-)-methyltransferase
1778	 57.89	0	1864390..1864959	-	189	62290769	rimM	BruAb1_1891	-	16S rRNA-processing protein
1779	 62.76	+1	1865183..1866130	+	315	62290770	xerC	BruAb1_1892	-	site-specific tyrosine recombinase XerC
1780	 56.49	0	1866184..1867185	+	333	62290771	-	BruAb1_1893	-	hypothetical protein
1781	 58.40	0	1867389..1868792	-	467	62290772	lpdA-2	BruAb1_1894	-	dihydrolipoamide dehydrogenase
1782	 53.96	0	1868961..1869503	-	180	62290773	-	BruAb1_1895	-	hypothetical protein
1783	 55.56	0	1869574..1870212	-	212	62290774	-	BruAb1_1896	-	amino acid transporter LysE
1784	 59.66	0	1870254..1870667	-	137	62290775	-	BruAb1_1897	-	hypothetical protein
1785	 61.45	+1	1870677..1871903	-	408	62290776	sucB	BruAb1_1898	-	dihydrolipoamide acetyltransferase
1786	 59.34	0	1871965..1874979	-	1004	62290777	kgd	BruAb1_1899	-	alpha-ketoglutarate decarboxylase
1787	 55.30	0	1875116..1875247	+	43	62290778	-	BruAb1_1900	-	hypothetical protein
1788	 60.58	0	1875257..1876159	-	300	62290779	sucD	BruAb1_1901	-	succinyl-CoA synthetase subunit alpha
1789	 57.64	0	1876163..1877359	-	398	62290780	sucC	BruAb1_1902	-	succinyl-CoA synthetase subunit beta
1790	 61.37	+1	1877466..1878428	-	320	62290781	mdh	BruAb1_1903	-	malate dehydrogenase
1791	 51.85	-1	1878548..1878790	-	80	62290782	-	BruAb1_1904	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.