IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1648	 61.94	+1	1715120..1715521	-	133	62290639	-	BruAb1_1753	-	S4 domain-containing protein
1649	 61.58	+1	1715557..1718643	-	1028	62290640	-	BruAb1_1754	-	ATP-dependent helicase
1650	 49.22	-1	1719012..1719332	-	106	62290641	-	BruAb1_1755	-	hypothetical protein
1651	 62.03	+1	1719316..1720500	-	394	62290642	phbA-1	BruAb1_1756	-	acetyl-CoA acetyltransferase
1652	 62.04	+1	1720676..1721107	+	143	62290643	-	BruAb1_1757	-	hypothetical protein
1653	 54.44	0	1721239..1721418	-	59	62290644	rpmF	BruAb1_1758	-	50S ribosomal protein L32
1654	 56.87	0	1721579..1722313	-	244	62290645	mtgA	BruAb1_1759	-	monofunctional biosynthetic peptidoglycan transglycosylase
1655	 62.95	+1	1722500..1723414	+	304	62290646	ispA	BruAb1_1760	-	IspA, geranyltranstransferase
1656	 60.17	0	1723422..1724684	-	420	62290647	ispG	BruAb1_1761	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1657	 57.20	0	1724852..1725643	+	263	62290648	-	BruAb1_1762	-	D-beta-hydroxybutyrate dehydrogenase
1658	 58.76	0	1725661..1726785	-	374	62290649	-	BruAb1_1763	-	transporter
1659	 58.79	0	1726914..1730390	-	1158	62290650	pyc	BruAb1_1764	-	pyruvate carboxylase
1660	 56.36	0	1730656..1731771	-	371	62290651	-	BruAb1_1765	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
1661	 49.28	-1	1732064..1732201	+	45	62290652	-	BruAb1_1766	-	hypothetical protein
1662	 55.11	0	1732392..1733507	-	371	62290653	-	BruAb1_1767	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
1663	 54.20	0	1733659..1734003	-	114	62290654	-	BruAb1_1768	-	hypothetical protein
1664	 57.33	0	1734013..1734762	-	249	62290655	-	BruAb1_1769	-	branched-chain amino acid ABC transporter, ATP-binding protein
1665	 57.97	0	1736098..1737477	-	459	62290656	-	BruAb1_1771	-	branched-chain amino acid ABC transporter, permease protein
1666	 57.32	0	1737480..1738388	-	302	62290657	-	BruAb1_1772	-	branched-chain amino acid ABC transporter, permease protein
1667	 58.98	0	1738682..1739683	-	333	62290658	-	BruAb1_1773	-	proline racemase
1668	 60.49	0	1739689..1740951	-	420	62290659	-	BruAb1_1774	-	D-amino acid dehydrogenase small subunit
1669	 63.22	+1	1741231..1741926	+	231	62290660	-	BruAb1_1775	-	GntR family transcriptional regulator
1670	 54.86	0	1741999..1742574	-	191	62290661	-	BruAb1_1776	-	MarR family transcriptional regulator
1671	 49.02	-1	1742597..1742698	-	33	62290662	-	BruAb1_1777	-	hypothetical protein
1672	 57.84	0	1742779..1743186	-	135	62290663	atpC	BruAb1_1778	-	F0F1 ATP synthase subunit epsilon
1673	 61.62	+1	1743311..1744876	-	521	62290664	atpD	BruAb1_1779	-	F0F1 ATP synthase subunit beta
1674	 56.66	0	1745004..1745882	-	292	62290665	atpG	BruAb1_1780	-	F0F1 ATP synthase subunit gamma
1675	 59.61	0	1745904..1747433	-	509	62290666	atpA	BruAb1_1781	-	F0F1 ATP synthase subunit alpha
1676	 58.29	0	1747433..1747993	-	186	62290667	atpH	BruAb1_1782	-	F0F1 ATP synthase subunit delta
1677	 58.94	0	1748275..1748688	-	137	62290668	-	BruAb1_1783	-	hypothetical protein
1678	 62.44	+1	1748755..1751001	-	748	62290669	priA	BruAb1_1784	-	primosome assembly protein PriA
1679	 56.57	0	1751111..1751764	+	217	62290670	-	BruAb1_1785	-	putative translaldolase
1680	 59.11	0	1751908..1752489	-	193	62290671	-	BruAb1_1786	-	hypothetical protein
1681	 59.19	0	1752476..1755109	-	877	62290672	leuS	BruAb1_1787	-	leucyl-tRNA synthetase
1682	 61.38	+1	1755232..1755912	+	226	62290673	-	BruAb1_1788	-	hypothetical protein
1683	 56.87	0	1755925..1756455	-	176	62290674	-	BruAb1_1789	-	hypothetical protein
1684	 54.17	0	1756526..1756813	-	95	62290675	-	BruAb1_1790	-	hypothetical protein
1685	 59.25	0	1757154..1759109	+	651	62290676	-	BruAb1_1791	-	acetyl-CoA synthetase
1686	 59.65	0	1759265..1759492	-	75	62290677	-	BruAb1_1792	-	hypothetical protein
1687	 60.33	0	1759615..1760592	+	325	62290678	htpX	BruAb1_1793	-	heat shock protein HtpX
1688	 62.80	+1	1760608..1762005	+	465	62290679	sun	BruAb1_1794	-	Sun, sun protein
1689	 61.95	+1	1762153..1763868	+	571	62290680	-	BruAb1_1795	-	hypothetical protein
1690	 61.47	+1	1763975..1765591	+	538	62290681	purH	BruAb1_1796	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1691	 59.44	0	1767228..1772030	-	1600	62290682	-	BruAb1_1798	-	hypothetical protein
1692	 58.10	0	1772295..1772936	-	213	62290683	-	BruAb1_1799	-	hypothetical protein
1693	 58.59	0	1772949..1773716	-	255	62290684	-	BruAb1_1800	-	hypothetical protein
1694	 55.93	0	1773797..1774420	-	207	62290685	lemA	BruAb1_1801	-	hypothetical protein
1695	 52.30	-1	1774417..1774590	-	57	62290686	-	BruAb1_1802	-	hypothetical protein
1696	 62.22	+1	1774690..1775094	-	134	62290687	rpsP	BruAb1_1803	-	30S ribosomal protein S16
1697	 58.41	0	1775161..1775475	-	104	62290688	-	BruAb1_1804	-	chorismate mutase
1698	 60.18	0	1775481..1777052	-	523	62290689	ffh	BruAb1_1805	-	Ffh, signal recognition particle protein
1699	 54.57	0	1777176..1777547	+	123	62290690	-	BruAb1_1806	-	hypothetical protein
1700	 59.90	0	1777487..1778314	+	275	62290691	-	BruAb1_1807	-	lytic murein transglycosylase
1701	 61.87	+1	1779194..1780090	-	298	62290692	-	BruAb1_1809	-	pyridoxamine kinase
1702	 64.24	+1	1780092..1780379	-	95	62290693	-	BruAb1_1810	-	hypothetical protein
1703	 60.32	0	1780752..1782248	-	498	62290694	mmsA	BruAb1_1811	-	MmsA, methylmalonic acid semialdehyde dehydrogenase
1704	 62.03	+1	1782376..1783281	+	301	62290695	-	BruAb1_1812	-	LysR family transcriptional regulator
1705	 60.16	0	1783597..1784241	-	214	62290696	-	BruAb1_1813	-	hypothetical protein
1706	 58.78	0	1784235..1784627	+	130	62290697	-	BruAb1_1814	-	hypothetical protein
1707	 60.15	0	1784679..1785215	-	178	62290698	ialA	BruAb1_1815	-	dinucleoside polyphosphate hydrolase
1708	 58.92	0	1785452..1786780	-	442	62290699	-	BruAb1_1816	-	carboxyl-terminal protease
1709	 59.48	0	1786770..1788119	-	449	62290700	-	BruAb1_1817	-	hypothetical protein
1710	 57.11	0	1788232..1789131	-	299	62290701	-	BruAb1_1818	-	hypothetical protein
1711	 62.75	+1	1789249..1789758	-	169	62290702	-	BruAb1_1819	-	SPOUT methyltransferase superfamily protein
1712	 56.97	0	1789777..1790199	-	140	62290703	-	BruAb1_1820	-	iojap-related protein
1713	 60.17	0	1790311..1790895	-	194	62290704	nadD	BruAb1_1821	-	nicotinic acid mononucleotide adenylyltransferase
1714	 61.37	+1	1790985..1792250	-	421	62290705	proA	BruAb1_1822	-	gamma-glutamyl phosphate reductase
1715	 60.16	0	1792278..1793414	-	378	62290706	proB	BruAb1_1823	-	gamma-glutamyl kinase
1716	 59.36	0	1793442..1794467	-	341	62290707	obgE	BruAb1_1824	-	GTPase ObgE
1717	 51.20	-1	1794723..1795433	-	236	62290708	-	BruAb1_1825	-	hypothetical protein
1718	 57.17	0	1795838..1796395	-	185	62290709	-	BruAb1_1826	-	acetyltransferase
1719	 57.60	0	1796449..1797099	-	216	62290710	-	BruAb1_1827	-	acetyltransferase
1720	 57.78	0	1797220..1797489	-	89	62290711	rpmA	BruAb1_1828	-	50S ribosomal protein L27
1721	 61.07	0	1797515..1797943	-	142	62290712	rplU	BruAb1_1829	-	50S ribosomal protein L21
1722	 48.03	-2	1798653..1799339	+	228	62290713	-	BruAb1_1830	-	IS2020 transposase
1723	 52.74	-1	1799556..1801508	+	650	62290714	-	BruAb1_1831	-	Cro/CI family transcriptional regulator
1724	 51.85	-1	1801505..1802179	+	224	62290715	-	BruAb1_1832	-	AzlC family protein
1725	 49.85	-1	1802179..1802517	+	112	62290716	-	BruAb1_1833	-	hypothetical protein
1726	 48.03	-2	1802738..1803424	-	228	62290717	-	BruAb1_1835	-	IS2020 transposase
1727	 50.35	-1	1803535..1804974	-	479	62290718	-	BruAb1_1836	-	hypothetical protein
1728	 50.22	-1	1805150..1805824	-	224	62290719	-	BruAb1_1837	-	hypothetical protein
1729	 54.76	0	1806142..1806309	+	55	62290720	-	BruAb1_1838	-	hypothetical protein
1730	 42.80	-2	1809803..1810045	+	80	62290721	-	BruAb1_1839	-	hypothetical protein
1731	 59.05	0	1812960..1814915	+	651	62290722	-	BruAb1_1840	-	M24/M37 family peptidase
1732	 59.09	0	1814983..1816209	-	408	62290723	-	BruAb1_1841	-	hypothetical protein
1733	 60.32	0	1816258..1816383	+	41	62290724	-	BruAb1_1842	-	hypothetical protein
1734	 58.78	0	1816883..1819507	-	874	62290725	clpB	BruAb1_1843	-	ClpB, ATP-dependent Clp protease, ATP-binding subunit ClpB
1735	 62.85	+1	1819706..1820464	-	252	62290726	-	BruAb1_1844	-	hypothetical protein
1736	 50.55	-1	1820445..1820717	-	90	62290727	-	BruAb1_1845	-	hypothetical protein
1737	 49.66	-1	1820779..1820925	+	48	62290728	-	BruAb1_1846	-	hypothetical protein
1738	 58.08	0	1820909..1821781	-	290	62290729	hemK	BruAb1_1847	-	hypothetical protein
1739	 60.09	0	1821793..1822872	-	359	62290730	prfA	BruAb1_1848	-	peptide chain release factor 1
1740	 60.37	0	1823069..1825339	-	756	62290731	ptsP	BruAb1_1849	-	PtsP, phosphoenolpyruvate-protein phosphotransferase
1741	 59.28	0	1825667..1826938	-	423	62290732	-	BruAb1_1850	-	aspartate kinase
1742	 59.29	0	1827852..1828787	-	311	62290733	-	BruAb1_1852	-	hypothetical protein
1743	 55.87	0	1828827..1829252	-	141	62290734	-	BruAb1_1853	-	hypothetical protein
1744	 59.77	0	1829258..1830112	-	284	62290735	-	BruAb1_1854	-	carbon-nitrogen hydrolase family protein
1745	 56.55	0	1830123..1830389	-	88	62290736	grxC	BruAb1_1855	-	GrxC, glutaredoxin 3
1746	 61.72	+1	1830473..1831261	-	262	62290737	-	BruAb1_1856	-	competence protein F
1747	 62.53	+1	1831444..1832337	+	297	62290738	-	BruAb1_1857	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.