IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1575	 52.99	0	1656996..1657112	-	38	62290566	-	BruAb1_1679	-	hypothetical protein
1576	 62.52	+1	1657276..1657782	-	168	62290567	-	BruAb1_1680	-	Pal family lipoprotein
1577	 48.89	-1	1657831..1658010	-	59	62290568	-	BruAb1_1681	-	hypothetical protein
1578	 59.08	0	1658070..1659401	-	443	62290569	tolB	BruAb1_1682	-	translocation protein TolB
1579	 60.22	0	1659457..1660527	-	356	62290570	tolA	BruAb1_1683	-	TolA, tolA protein
1580	 54.97	0	1660535..1660987	-	150	62290571	-	BruAb1_1684	-	ExbD/TolR family TonB system transport protein
1581	 59.07	0	1661034..1661744	-	236	62290572	tolQ	BruAb1_1685	-	TolQ, tolQ protein
1582	 56.44	0	1662119..1662568	-	149	62290573	-	BruAb1_1686	-	hypothetical protein
1583	 61.58	+1	1662565..1663605	-	346	62290574	ruvB	BruAb1_1687	-	Holliday junction DNA helicase B
1584	 61.33	0	1663646..1664263	-	205	62290575	ruvA	BruAb1_1688	-	Holliday junction DNA helicase motor protein
1585	 59.77	0	1664268..1664789	-	173	62290576	ruvC	BruAb1_1689	-	Holliday junction resolvase
1586	 60.95	0	1664891..1665397	-	168	62290577	-	BruAb1_1690	-	hypothetical protein
1587	 58.35	0	1665884..1667086	-	400	62290578	opgC	BruAb1_1691	-	hypothetical protein
1588	 61.71	+1	1667310..1667975	+	221	62290579	-	BruAb1_1692	-	thiamine-phosphate pyrophosphorylase
1589	 61.71	+1	1667976..1669064	+	362	62290580	-	BruAb1_1693	-	hypothetical protein
1590	 50.93	-1	1669073..1669180	+	35	62290581	-	BruAb1_1694	-	hypothetical protein
1591	 56.51	0	1669329..1669889	+	186	62290582	efp	BruAb1_1695	-	elongation factor P
1592	 61.74	+1	1670075..1670866	+	263	62290583	-	BruAb1_1696	-	inositol monophosphatase family protein
1593	 42.34	-2	1670871..1670981	+	36	62290584	-	BruAb1_1697	-	hypothetical protein
1594	 60.86	0	1671121..1672170	+	349	62290585	-	BruAb1_1698	-	hypothetical protein
1595	 59.59	0	1672177..1673208	+	343	62290586	-	BruAb1_1699	-	hypothetical protein
1596	 60.67	0	1673242..1675041	-	599	62290587	-	BruAb1_1700	-	ABC transporter, ATP binding/permease protein
1597	 59.01	0	1675357..1675578	+	73	62290588	rpmE	BruAb1_1701	-	50S ribosomal protein L31
1598	 57.30	0	1675806..1676552	-	248	62290589	-	BruAb1_1702	-	hypothetical protein
1599	 64.07	+1	1676773..1677465	+	230	62290590	-	BruAb1_1703	-	GntR family transcriptional regulator
1600	 62.67	+1	1677627..1678202	+	191	62290591	-	BruAb1_1704	-	BioY family protein
1601	 59.21	0	1678213..1678641	+	142	62290592	-	BruAb1_1705	-	hypothetical protein
1602	 56.32	0	1678654..1679397	-	247	62290593	-	BruAb1_1706	-	hypothetical protein
1603	 58.79	0	1679608..1680432	-	274	62290594	-	BruAb1_1707	-	hypothetical protein
1604	 62.14	+1	1680541..1681137	-	198	62290595	-	BruAb1_1708	-	5-formyltetrahydrofolate cyclo-ligase family protein
1605	 59.02	0	1681525..1681890	-	121	62290596	-	BruAb1_1709	-	hypothetical protein
1606	 60.44	0	1681900..1682172	-	90	62290597	-	BruAb1_1710	-	hypothetical protein
1607	 46.88	-2	1682315..1682410	-	31	62290598	-	BruAb1_1711	-	hypothetical protein
1608	 60.14	0	1682589..1684580	+	663	62290599	tkt	BruAb1_1712	-	transketolase
1609	 58.53	0	1684721..1685728	+	335	62290600	gap	BruAb1_1713	-	glyceraldehyde-3-phosphate dehydrogenase
1610	 60.35	0	1685799..1686986	+	395	62290601	pgk	BruAb1_1714	-	phosphoglycerate kinase
1611	 56.97	0	1687277..1687441	-	54	62290602	-	BruAb1_1715	-	hypothetical protein
1612	 60.49	0	1687715..1689625	+	636	62290603	prpE	BruAb1_1716	-	PrpE, propionate--CoA ligase
1613	 56.62	0	1689645..1689863	+	72	62290604	-	BruAb1_1717	-	hypothetical protein
1614	 53.78	0	1689970..1690194	+	74	62290605	-	BruAb1_1718	-	hypothetical protein
1615	 61.11	0	1690201..1690902	+	233	62290606	-	BruAb1_1719	-	transcriptional regulator
1616	 39.81	-2	1691155..1691262	-	35	62290607	-	BruAb1_1720	-	hypothetical protein
1617	 61.03	0	1691305..1691712	+	135	62290608	-	BruAb1_1721	-	hypothetical protein
1618	 59.13	0	1691790..1692479	-	229	62290609	-	BruAb1_1722	-	hypothetical protein
1619	 61.59	+1	1692607..1693611	-	334	62290610	-	BruAb1_1723	-	alcohol dehydrogenase, zinc-containing
1620	 56.77	0	1693804..1693995	+	63	62290611	-	BruAb1_1724	-	hypothetical protein
1621	 48.33	-2	1695473..1695652	-	59	62290612	-	BruAb1_1726	-	hypothetical protein
1622	 52.25	-1	1695711..1695932	-	73	62290613	-	BruAb1_1727	-	hypothetical protein
1623	 49.51	-1	1696046..1696249	+	67	62290614	-	BruAb1_1728	-	hypothetical protein
1624	 62.78	+1	1696347..1696835	+	162	62290615	purE	BruAb1_1729	-	PurE, phosphoribosylaminoimidazole carboxylase, catalytic subunit
1625	 60.06	0	1696852..1697940	+	362	62290616	purK	BruAb1_1730	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1626	 57.94	0	1698176..1698301	+	41	62290617	rpmJ	BruAb1_1731	-	50S ribosomal protein L36
1627	 57.10	0	1698339..1699028	+	229	62290618	-	BruAb1_1732	-	TPR domain-containing protein
1628	 59.22	0	1699280..1700716	-	478	62290619	pyk	BruAb1_1733	-	pyruvate kinase
1629	 53.46	0	1700713..1701174	-	153	62290620	-	BruAb1_1734	-	hypothetical protein
1630	 57.98	0	1701326..1702234	+	302	62290621	-	BruAb1_1735	-	hypothetical protein
1631	 51.85	-1	1702231..1702392	+	53	62290622	-	BruAb1_1736	-	hypothetical protein
1632	 50.19	-1	1702407..1702667	+	86	62290623	-	BruAb1_1737	-	hypothetical protein
1633	 59.74	0	1702759..1704576	-	605	62290624	-	BruAb1_1738	-	ABC transporter, ATP-binding protein
1634	 50.29	-1	1704585..1704755	-	56	62290625	-	BruAb1_1739	-	hypothetical protein
1635	 60.35	0	1704724..1705008	-	94	62290626	-	BruAb1_1740	-	lipoprotein
1636	 56.16	0	1705142..1705798	-	218	62290627	-	BruAb1_1741	-	hypothetical protein
1637	 55.82	0	1706105..1707109	+	334	62290628	tbpA	BruAb1_1742	-	thiamine transporter substrate binding subunit
1638	 60.66	0	1707106..1708737	+	543	62290629	thiP	BruAb1_1743	-	thiamine transporter membrane protein
1639	 60.19	0	1708734..1709459	+	241	62290630	-	BruAb1_1744	-	thiamine ABC transporter ATP-binding protein
1640	 52.08	-1	1709456..1709551	-	31	62290631	-	BruAb1_1745	-	hypothetical protein
1641	 61.34	+1	1709726..1711207	+	493	62290632	-	BruAb1_1746	-	peptidase
1642	 57.75	0	1711234..1711962	+	242	62290633	-	BruAb1_1747	-	MOSC domain-containing protein
1643	 58.76	0	1712050..1712985	-	311	62290634	rpoH2	BruAb1_1748	-	RNA polymerase factor sigma-32
1644	 48.10	-2	1713149..1713358	-	69	62290635	-	BruAb1_1749	-	hypothetical protein
1645	 55.21	0	1713330..1713914	-	194	62290636	-	BruAb1_1750	-	transcriptional regulator
1646	 55.75	0	1714419..1714757	-	112	62290637	fdxA	BruAb1_1751	-	FdxA, ferredoxin A
1647	 51.71	-1	1714890..1715123	-	77	62290638	-	BruAb1_1752	-	hypothetical protein
1648	 61.94	+1	1715120..1715521	-	133	62290639	-	BruAb1_1753	-	S4 domain-containing protein
1649	 61.58	+1	1715557..1718643	-	1028	62290640	-	BruAb1_1754	-	ATP-dependent helicase
1650	 49.22	-1	1719012..1719332	-	106	62290641	-	BruAb1_1755	-	hypothetical protein
1651	 62.03	+1	1719316..1720500	-	394	62290642	phbA-1	BruAb1_1756	-	acetyl-CoA acetyltransferase
1652	 62.04	+1	1720676..1721107	+	143	62290643	-	BruAb1_1757	-	hypothetical protein
1653	 54.44	0	1721239..1721418	-	59	62290644	rpmF	BruAb1_1758	-	50S ribosomal protein L32
1654	 56.87	0	1721579..1722313	-	244	62290645	mtgA	BruAb1_1759	-	monofunctional biosynthetic peptidoglycan transglycosylase
1655	 62.95	+1	1722500..1723414	+	304	62290646	ispA	BruAb1_1760	-	IspA, geranyltranstransferase
1656	 60.17	0	1723422..1724684	-	420	62290647	ispG	BruAb1_1761	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1657	 57.20	0	1724852..1725643	+	263	62290648	-	BruAb1_1762	-	D-beta-hydroxybutyrate dehydrogenase
1658	 58.76	0	1725661..1726785	-	374	62290649	-	BruAb1_1763	-	transporter
1659	 58.79	0	1726914..1730390	-	1158	62290650	pyc	BruAb1_1764	-	pyruvate carboxylase
1660	 56.36	0	1730656..1731771	-	371	62290651	-	BruAb1_1765	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
1661	 49.28	-1	1732064..1732201	+	45	62290652	-	BruAb1_1766	-	hypothetical protein
1662	 55.11	0	1732392..1733507	-	371	62290653	-	BruAb1_1767	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
1663	 54.20	0	1733659..1734003	-	114	62290654	-	BruAb1_1768	-	hypothetical protein
1664	 57.33	0	1734013..1734762	-	249	62290655	-	BruAb1_1769	-	branched-chain amino acid ABC transporter, ATP-binding protein
1665	 57.97	0	1736098..1737477	-	459	62290656	-	BruAb1_1771	-	branched-chain amino acid ABC transporter, permease protein
1666	 57.32	0	1737480..1738388	-	302	62290657	-	BruAb1_1772	-	branched-chain amino acid ABC transporter, permease protein
1667	 58.98	0	1738682..1739683	-	333	62290658	-	BruAb1_1773	-	proline racemase
1668	 60.49	0	1739689..1740951	-	420	62290659	-	BruAb1_1774	-	D-amino acid dehydrogenase small subunit
1669	 63.22	+1	1741231..1741926	+	231	62290660	-	BruAb1_1775	-	GntR family transcriptional regulator
1670	 54.86	0	1741999..1742574	-	191	62290661	-	BruAb1_1776	-	MarR family transcriptional regulator
1671	 49.02	-1	1742597..1742698	-	33	62290662	-	BruAb1_1777	-	hypothetical protein
1672	 57.84	0	1742779..1743186	-	135	62290663	atpC	BruAb1_1778	-	F0F1 ATP synthase subunit epsilon
1673	 61.62	+1	1743311..1744876	-	521	62290664	atpD	BruAb1_1779	-	F0F1 ATP synthase subunit beta
1674	 56.66	0	1745004..1745882	-	292	62290665	atpG	BruAb1_1780	-	F0F1 ATP synthase subunit gamma
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.