IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1435	 56.98	0	1508141..1509028	-	295	62290426	-	BruAb1_1530	-	ubiquinol-cytochrome c reductase, cytochrome c1
1436	 57.04	0	1509042..1510340	-	432	62290427	petB	BruAb1_1531	-	PetB, ubiquinol-cytochrome c reductase, cytochrome b
1437	 58.16	0	1510362..1510925	-	187	62290428	-	BruAb1_1532	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
1438	 58.47	0	1511177..1513042	-	621	62290429	-	BruAb1_1533	-	ABC transporter ATP-binding/permease
1439	 57.25	0	1513199..1515067	-	622	62290430	-	BruAb1_1534	-	ABC transporter, ATP-binding protein
1440	 58.33	0	1515200..1515679	+	159	62290431	-	BruAb1_1535	-	RNA methyltransferase
1441	 57.51	0	1515789..1516826	+	345	62290432	-	BruAb1_1536	-	purine nucleoside permease
1442	 54.90	0	1516829..1516930	-	33	62290433	-	BruAb1_1537	-	hypothetical protein
1443	 62.07	+1	1516938..1517198	-	86	62290434	-	BruAb1_1538	-	hypothetical protein
1444	 57.79	0	1517492..1518403	+	303	62290435	hemF	BruAb1_1539	-	coproporphyrinogen III oxidase
1445	 60.81	0	1518437..1518931	-	164	62290436	-	BruAb1_1540	-	acetyltransferase
1446	 59.28	0	1519964..1521235	-	423	62290437	-	BruAb1_1542	-	polyA polymerase family protein
1447	 61.06	0	1521232..1521855	-	207	62290438	-	BruAb1_1543	-	MutT/nudix family protein
1448	 60.21	0	1521852..1522517	-	221	62290439	-	BruAb1_1544	-	hypothetical protein
1449	 62.10	+1	1522637..1523644	+	335	62290440	moxR	BruAb1_1545	-	MoxR, moxR protein
1450	 63.34	+1	1523644..1524576	+	310	62290441	-	BruAb1_1546	-	hypothetical protein
1451	 61.57	+1	1524573..1527419	+	948	62290442	-	BruAb1_1547	-	hypothetical protein
1452	 60.53	0	1527483..1529552	+	689	62290443	-	BruAb1_1548	-	hypothetical protein
1453	 63.12	+1	1529620..1530126	-	168	62290444	-	BruAb1_1549	-	acetyltransferase
1454	 56.81	0	1530430..1531413	+	327	62290445	-	BruAb1_1550	-	glutathione S-transferase domain-containing protein
1455	 56.14	0	1531561..1532244	+	227	62290446	-	BruAb1_1551	-	hypothetical protein
1456	 53.51	0	1532278..1532733	-	151	62290447	-	BruAb1_1552	-	MutT/nudix family protein
1457	 59.91	0	1532842..1533744	+	300	62290448	-	BruAb1_1553	-	hypothetical protein
1458	 51.94	-1	1533738..1533866	-	42	62290449	-	BruAb1_1554	-	hypothetical protein
1459	 57.25	0	1533945..1535612	-	555	161611211	leuA	BruAb1_1555	-	2-isopropylmalate synthase
1460	 58.49	0	1535804..1535962	-	52	62290451	-	BruAb1_1556	-	hypothetical protein
1461	 58.53	0	1535977..1536885	-	302	62290452	-	BruAb1_1557	-	cation efflux family protein
1462	 58.38	0	1537355..1539550	-	731	62290453	trpE	BruAb1_1558	-	anthranilate synthase
1463	 55.19	0	1540229..1540690	+	153	62290454	lrp-2	BruAb1_1559	-	Lrp-2, leucine-responsive regulatory protein
1464	 61.02	0	1541336..1542628	+	430	62290455	-	BruAb1_1561	-	transporter
1465	 62.94	+1	1542623..1543588	-	321	62290456	-	BruAb1_1562	-	hypothetical protein
1466	 57.98	0	1543594..1544790	-	398	62290457	-	BruAb1_1563	-	hypothetical protein
1467	 50.67	-1	1544787..1544936	-	49	62290458	-	BruAb1_1564	-	hypothetical protein
1468	 53.97	0	1544920..1545045	-	41	62290459	-	BruAb1_1565	-	hypothetical protein
1469	 56.04	0	1545225..1546193	+	322	62290460	-	BruAb1_1566	-	glycine betaine/L-proline ABC transporter periplasmic glycine betaine-binding protein
1470	 56.51	0	1546282..1547118	+	278	62290461	-	BruAb1_1567	-	glycine betaine/L-proline ABC transporter permease
1471	 58.83	0	1547288..1548334	+	348	62290462	-	BruAb1_1568	-	glycine betaine/L-proline ABC transporter
1472	 56.89	0	1548608..1549456	-	282	62290463	-	BruAb1_1569	-	dipeptide ABC transporter ATP-binding protein
1473	 56.42	0	1549453..1550301	-	282	62290464	-	BruAb1_1570	-	dipeptide ABC transporter ATP-binding protein
1474	 58.42	0	1550307..1551215	-	302	62290465	-	BruAb1_1571	-	dipeptide ABC transporter, permease protein
1475	 55.56	0	1551223..1552230	-	335	62290466	-	BruAb1_1572	-	dipeptide ABC transporter, permease protein
1476	 50.00	-1	1554267..1554572	+	101	62290467	-	BruAb1_1574	-	hypothetical protein
1477	 38.60	-2	1554813..1555040	-	75	62290468	-	BruAb1_1575	-	hypothetical protein
1478	 47.70	-2	1555030..1555377	+	115	62290469	-	BruAb1_1576	-	ArsR family transcriptional regulator
1479	 54.63	0	1555407..1556237	+	276	62290470	-	BruAb1_1577	-	RNA methyltransferase
1480	 59.73	0	1556459..1557655	-	398	62290471	trmU	BruAb1_1578	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1481	 45.28	-2	1557693..1557851	-	52	62290472	-	BruAb1_1579	-	hypothetical protein
1482	 57.97	0	1557960..1558235	+	91	62290473	-	BruAb1_1580	-	hypothetical protein
1483	 56.12	0	1558438..1558731	+	97	62290474	-	BruAb1_1581	-	hypothetical protein
1484	 56.30	0	1558779..1559714	-	311	62290475	-	BruAb1_1582	-	hypothetical protein
1485	 55.95	0	1559944..1560540	-	198	62290476	-	BruAb1_1583	-	hypothetical protein
1486	 60.42	0	1560810..1560953	-	47	62290477	-	BruAb1_1584	-	hypothetical protein
1487	 58.10	0	1560952..1561581	+	209	62290478	-	BruAb1_1585	-	hypothetical protein
1488	 54.94	0	1561694..1562392	-	232	62290479	ctrA	BruAb1_1586	-	CtrA, cell cycle transcriptional regulator CtrA
1489	 56.74	0	1562923..1563315	+	130	62290480	-	BruAb1_1587	-	hypothetical protein
1490	 56.62	0	1563399..1564523	-	374	62290481	-	BruAb1_1588	-	DegT/DnrJ/EryC1/StrS family protein
1491	 56.53	0	1564683..1565639	-	318	62290482	-	BruAb1_1589	-	Gfo/Idh/MocA family oxidoreductase
1492	 46.85	-2	1565645..1565755	-	36	62290483	-	BruAb1_1590	-	hypothetical protein
1493	 49.02	-1	1566041..1566295	+	84	62290484	-	BruAb1_1591	-	hypothetical protein
1494	 50.45	-1	1566471..1567253	-	260	62290485	-	BruAb1_1592	-	glycosyl transferase family protein
1495	 60.59	0	1567998..1571105	+	1035	62290486	-	BruAb1_1593	-	sensory box histidine kinase
1496	 47.22	-2	1571325..1571432	-	35	62290487	-	BruAb1_1594	-	hypothetical protein
1497	 59.96	0	1571846..1573783	+	645	62290488	-	BruAb1_1595	-	AsmA family protein
1498	 59.00	0	1573791..1574612	-	273	62290489	-	BruAb1_1596	-	spermidine/putrescine ABC transporter, permease protein
1499	 57.33	0	1575540..1576685	-	381	62290490	-	BruAb1_1598	-	spermidine/putrescine ABC transporter, ATP-binding protein
1500	 55.34	0	1576927..1578030	-	367	62290491	-	BruAb1_1599	-	spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein
1501	 60.54	0	1579913..1581202	+	429	62290492	aceA	BruAb1_1601	-	isocitrate lyase
1502	 56.12	0	1581237..1581473	+	78	62290493	-	BruAb1_1602	-	hypothetical protein
1503	 55.04	0	1581470..1581598	+	42	62290494	-	BruAb1_1603	-	hypothetical protein
1504	 59.51	0	1582186..1582953	+	255	62290495	-	BruAb1_1604	-	7-alpha-hydroxysteroid dehydrogenase
1505	 57.11	0	1583019..1583813	+	264	62290496	-	BruAb1_1605	-	7-alpha-hydroxysteroid dehydrogenase
1506	 57.88	0	1585608..1586210	+	200	62290497	-	BruAb1_1607	-	hypothetical protein
1507	 53.94	0	1586489..1587274	+	261	62290498	omp31-1	BruAb1_1608	-	Omp31-1, outer membrane protein, 31 kDa
1508	 53.51	0	1587411..1588961	-	516	62290499	-	BruAb1_1609	-	hypothetical protein
1509	 50.00	-1	1589082..1589171	+	29	62290500	-	BruAb1_1610	-	hypothetical protein
1510	 47.06	-2	1589262..1589363	-	33	62290501	-	BruAb1_1611	-	hypothetical protein
1511	 49.65	-1	1589514..1589795	+	93	62290502	-	BruAb1_1612	-	hypothetical protein
1512	 56.33	0	1590072..1590719	-	215	62290503	-	BruAb1_1613	-	dihydroxyacetone kinase family protein
1513	 57.48	0	1593027..1593668	-	213	62290504	-	BruAb1_1615	-	hypothetical protein
1514	 55.68	0	1594705..1595478	-	257	62290505	-	BruAb1_1617	-	short chain dehydrogenase
1515	 55.25	0	1595567..1596556	-	329	62290506	-	BruAb1_1618	-	LacI family sugar-binding transcriptional regulator
1516	 57.31	0	1596732..1597736	-	334	62290507	rbsC-2	BruAb1_1619	-	RbsC-2, ribose ABC transporter, permease protein
1517	 55.85	0	1597832..1599310	-	492	62290508	rbsA-2	BruAb1_1620	-	RbsA-2, ribose ABC transporter, ATP-binding protein
1518	 53.62	0	1599472..1599609	+	45	62290509	-	BruAb1_1621	-	hypothetical protein
1519	 53.14	0	1599606..1599923	+	105	62290510	-	BruAb1_1622	-	hypothetical protein
1520	 52.71	-1	1600053..1600181	-	42	62290511	-	BruAb1_1623	-	hypothetical protein
1521	 56.52	0	1600325..1601941	+	538	62290512	-	BruAb1_1624	-	GMC family oxidoreductase
1522	 45.10	-2	1602590..1602742	+	50	62290513	-	BruAb1_1625	-	hypothetical protein
1523	 42.80	-2	1605697..1605939	+	80	62290514	-	BruAb1_1626	-	hypothetical protein
1524	 58.88	0	1608641..1609462	-	273	62290515	-	BruAb1_1627	-	IclR family transcriptional regulator
1525	 58.82	0	1609580..1611031	+	483	62290516	gabD	BruAb1_1628	-	GabD, succinate-semialdehyde dehydrogenase
1526	 58.38	0	1611148..1611738	+	196	62290517	-	BruAb1_1629	-	hypothetical protein
1527	 57.80	0	1611851..1612369	+	172	62290518	-	BruAb1_1630	-	disulfide bond formation protein B
1528	 56.54	0	1612386..1612958	-	190	62290519	-	BruAb1_1631	-	HNH endonuclease family protein
1529	 59.14	0	1612955..1613047	-	30	62290520	-	BruAb1_1632	-	hypothetical protein
1530	 49.07	-1	1613109..1613216	-	35	62290521	-	BruAb1_1633	-	hypothetical protein
1531	 64.70	+1	1613232..1613891	-	219	62290522	-	BruAb1_1634	-	base-excision DNA repair protein
1532	 58.56	0	1613952..1614827	+	291	62290523	-	BruAb1_1635	-	glutamyl-Q tRNA(Asp) synthetase
1533	 58.34	0	1614970..1617156	+	728	62290524	glcB	BruAb1_1636	-	malate synthase G
1534	 57.78	0	1617461..1617955	+	164	62290525	-	BruAb1_1637	-	acetyltransferase
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.