IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
96	 53.97	0	110071..110889	+	272	62289087	-	BruAb1_0103	-	hypothetical protein
97	 57.73	0	111168..112196	+	342	62289088	-	BruAb1_0104	-	sulfate ABC transporter, sulfate-binding protein
98	 59.40	0	112291..113157	+	288	62289089	-	BruAb1_0105	-	sulfate ABC transporter, permease protein
99	 59.05	0	113147..114013	+	288	62289090	cysW-1	BruAb1_0106	-	CysW-1, sulfate ABC transporter, permease protein
100	 61.39	+1	114111..115190	+	359	62289091	-	BruAb1_0107	-	sulfate ABC transporter ATP-binding protein
101	 60.50	0	115576..124179	+	2867	62289092	-	BruAb1_0108	-	cyclic beta 1-2 glucan synthetase
102	 58.39	0	124269..125573	+	434	62289093	pncB	BruAb1_0109	-	nicotinate phosphoribosyltransferase
103	 60.77	0	125615..126445	-	276	62289094	-	BruAb1_0110	-	PhzF family phenazine biosynthesis protein
104	 55.77	0	126555..127343	-	262	62289095	-	BruAb1_0111	-	hypothetical protein
105	 59.33	0	127366..128292	-	308	62289096	cscK	BruAb1_0112	-	CscK, fructokinase
106	 59.60	0	128383..129189	-	268	62289097	-	BruAb1_0113	-	short chain dehydrogenase/reductase family oxidoreductase
107	 60.12	0	129310..131601	-	763	62289098	-	BruAb1_0114	-	1A family penicillin-binding protein
108	 56.13	0	131807..132499	-	230	62289099	-	BruAb1_0115	-	hypothetical protein
109	 56.19	0	132766..133452	-	228	62289100	-	BruAb1_0116	-	hypothetical protein
110	 56.15	0	133684..134301	-	205	62289101	-	BruAb1_0117	-	3-5 exonuclease family protein
111	 59.46	0	134340..135755	-	471	62289102	-	BruAb1_0118	-	hypothetical protein
112	 53.52	0	135908..136234	+	108	62289103	-	BruAb1_0119	-	hypothetical protein
113	 59.35	0	136316..139252	+	978	62289104	polA	BruAb1_0120	-	DNA polymerase I
114	 60.29	0	139394..141274	+	626	62289105	-	BruAb1_0121	-	DEAD-box ATP dependent DNA helicase
115	 59.84	0	141370..143802	-	810	62289106	gyrB	BruAb1_0122	-	DNA gyrase subunit B
116	 49.40	-1	143862..144029	-	55	62289107	-	BruAb1_0123	-	hypothetical protein
117	 57.95	0	144130..144966	-	278	62289108	-	BruAb1_0124	-	esterase
118	 56.62	0	145629..146096	-	155	62289109	-	BruAb1_0126	-	acetyltransferase
119	 60.92	0	146096..147208	-	370	62289110	-	BruAb1_0127	-	glutathione-dependent formaldehyde dehydrogenase
120	 60.94	0	150203..151495	+	430	62289111	-	BruAb1_0130	-	sensor histidine kinase
121	 58.01	0	151587..151898	+	103	62289112	-	BruAb1_0131	-	IS711, transposase orfA
122	 52.28	-1	151885..152322	+	145	62289113	-	BruAb1_0132	-	IS711, transposase orfB
123	 45.54	-2	152514..152726	+	70	62289114	-	BruAb1_0133	-	hypothetical protein
124	 60.46	0	152922..153485	+	187	62289115	-	BruAb1_0134	-	DNA-binding response regulator
125	 63.43	+1	153491..153985	-	164	62289116	-	BruAb1_0135	-	hypothetical protein
126	 57.33	0	154255..154875	+	206	62289117	-	BruAb1_0136	-	lipoprotein
127	 59.69	0	154965..155537	-	190	62289118	-	BruAb1_0137	-	NifU-related protein
128	 60.33	0	155646..156134	-	162	62289119	-	BruAb1_0138	-	hypothetical protein
129	 59.83	0	156192..157259	-	355	161611216	trpS	BruAb1_0139	-	tryptophanyl-tRNA synthetase
130	 60.00	0	157356..158945	-	529	62289121	mviN	BruAb1_0140	-	MviN, virulence factor
131	 58.54	0	158959..161763	-	934	62289122	-	BruAb1_0141	-	PII uridylyl-transferase
132	 60.37	0	164356..167088	+	910	62289123	mutS	BruAb1_0143	-	DNA mismatch repair protein
133	 59.10	0	167394..168239	-	281	62289124	-	BruAb1_0144	-	hypothetical protein
134	 52.80	-1	168562..169044	-	160	62289125	lspA	BruAb1_0145	-	LspA, lipoprotein signal peptidase
135	 59.84	0	169046..169939	-	297	62289126	-	BruAb1_0146	-	RNA methyltransferase
136	 61.26	0	169936..171081	-	381	62289127	-	BruAb1_0147	-	SAM dependent methyltransferase
137	 58.95	0	171194..171517	-	107	62289128	-	BruAb1_0148	-	hypothetical protein
138	 56.84	0	171527..171811	-	94	62289129	ihfB	BruAb1_0149	-	integration host factor subunit beta
139	 60.04	0	171858..172853	-	331	62289130	sppA	BruAb1_0150	-	SppA, signal peptide peptidase SppA
140	 55.35	0	173372..174025	+	217	62289131	-	BruAb1_0151	-	hypothetical protein
141	 60.81	0	174349..174963	+	204	62289132	-	BruAb1_0152	-	hypothetical protein
142	 59.95	0	174975..175808	+	277	62289133	-	BruAb1_0153	-	ABC transporter, ATP-binding protein
143	 57.75	0	176104..177606	+	500	62289134	rpoN	BruAb1_0154	-	RNA polymerase factor sigma-54
144	 46.72	-2	177755..178120	-	121	62289135	-	BruAb1_0155	-	hypothetical protein
145	 58.75	0	178356..178949	+	197	62289136	yfiA	BruAb1_0156	-	YfiA, ribosomal subunit interface protein
146	 58.49	0	179052..179516	+	154	62289137	ptsN	BruAb1_0157	-	PtsN, PTS system, nitrogen regulatory IIA component
147	 58.54	0	179597..179842	-	81	62289138	-	BruAb1_0158	-	hypothetical protein
148	 56.26	0	179948..180370	-	140	62289139	-	BruAb1_0159	-	HSP20 family protein
149	 49.25	-1	180461..180661	-	66	62289140	-	BruAb1_0160	-	hypothetical protein
150	 58.63	0	180642..181139	-	165	62289141	-	BruAb1_0161	-	hypothetical protein
151	 60.51	0	181244..181990	+	248	62289142	nth	BruAb1_0162	-	Nth, endonuclease III
152	 58.40	0	182031..182744	-	237	62289143	-	BruAb1_0163	-	CysZ-like protein
153	 56.61	0	182741..182929	-	62	62289144	-	BruAb1_0164	-	hypothetical protein
154	 59.92	0	183004..183996	+	330	62289145	-	BruAb1_0165	-	carbohydrate kinase
155	 59.82	0	184015..184671	-	218	62289146	-	BruAb1_0166	-	hypothetical protein
156	 59.18	0	184804..185484	-	226	62289147	grpE	BruAb1_0167	-	GrpE, heat shock protein
157	 58.93	0	185590..186714	-	374	62289148	hrcA	BruAb1_0168	-	heat-inducible transcription repressor
158	 62.76	+1	186882..187598	+	238	62289149	rph	BruAb1_0169	-	ribonuclease PH
159	 59.58	0	188178..188840	+	220	62289150	-	BruAb1_0171	-	putative deoxyribonucleotide triphosphate pyrophosphatase
160	 60.41	0	188837..190051	+	404	62289151	-	BruAb1_0172	-	coproporphyrinogen III oxidase
161	 62.28	+1	190063..190974	+	303	62289152	-	BruAb1_0173	-	tetrapyrrole methylase family protein
162	 61.42	+1	190971..191351	+	126	62289153	-	BruAb1_0174	-	hypothetical protein
163	 64.16	+1	191571..193004	+	477	62289154	cysG	BruAb1_0175	-	CysG, siroheme synthase
164	 62.71	+1	193022..193324	+	100	62289155	-	BruAb1_0176	-	hypothetical protein
165	 57.57	0	193345..195015	+	556	62289156	cysI	BruAb1_0177	-	CysI, sulfite reductase (NADPH) hemoprotein beta-component
166	 63.37	+1	195005..195763	+	252	62289157	cysH	BruAb1_0178	-	phosphoadenosine phosphosulfate reductase
167	 59.24	0	195816..196340	+	174	62289158	-	BruAb1_0179	-	hypothetical protein
168	 53.40	0	196408..196701	+	97	62289159	-	BruAb1_0180	-	hypothetical protein
169	 59.41	0	196702..197280	-	192	62289160	ogt	BruAb1_0181	-	Ogt, methylated-DNA--protein-cysteine methyltransferase
170	 56.91	0	197538..197783	+	81	62289161	-	BruAb1_0182	-	hypothetical protein
171	 61.28	0	197836..198225	-	129	62289162	-	BruAb1_0183	-	hypothetical protein
172	 59.27	0	198539..202324	+	1261	62289163	metH	BruAb1_0184	-	B12-dependent methionine synthase
173	 51.41	-1	202645..203352	+	235	62289164	-	BruAb1_0185	-	LuxR family transcriptional regulator
174	 59.52	0	203467..204837	+	456	62289165	-	BruAb1_0186	-	aminotransferase
175	 49.19	-1	204816..205061	-	81	62289166	-	BruAb1_0187	-	hypothetical protein
176	 55.70	0	205240..206142	+	300	62289167	cysD	BruAb1_0188	-	sulfate adenylyltransferase subunit 2
177	 58.14	0	206142..208076	+	644	62289168	cysNC	BruAb1_0189	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
178	 61.92	+1	208124..208924	+	266	62289169	cysQ	BruAb1_0190	-	CysQ, 3(2),5-bisphosphate nucleotidase
179	 56.56	0	209186..209947	-	253	62289170	-	BruAb1_0191	-	Crp/FNR family transcriptional regulator
180	 57.14	0	210235..210927	+	230	62289171	-	BruAb1_0192	-	LuxR family transcriptional regulator
181	 33.33	-2	210902..211033	+	43	62289172	-	BruAb1_0193	-	hypothetical protein
182	 58.33	0	211255..212046	+	263	62289173	glpR	BruAb1_0194	-	GlpR, glycerol-3-phosphate transcriptional regulator
183	 60.38	0	212128..213639	+	503	62289174	glpD	BruAb1_0195	-	glycerol-3-phosphate dehydrogenase
184	 64.81	+1	213858..214826	+	322	62289175	-	BruAb1_0196	-	Fis family transcriptional regulator
185	 59.03	0	216972..218006	+	344	62289176	-	BruAb1_0198	-	alcohol dehydrogenase, zinc-containing
186	 60.10	0	218070..218465	+	131	62289177	-	BruAb1_0199	-	hypothetical protein
187	 59.82	0	218491..219513	+	340	62289178	-	BruAb1_0200	-	LacI family transcription regulator
188	 52.74	-1	221522..221722	+	66	62289179	-	BruAb1_0202	-	hypothetical protein
189	 41.41	-2	221764..221862	-	32	62289180	-	BruAb1_0203	-	hypothetical protein
190	 52.56	-1	221857..222012	+	51	62289181	-	BruAb1_0204	-	hypothetical protein
191	 59.21	0	222025..223458	+	477	62289182	-	BruAb1_0205	-	aldehyde dehydrogenase family protein
192	 63.19	+1	223503..224279	-	258	62289183	-	BruAb1_0206	-	ABC transporter, permease protein
193	 58.94	0	224276..224974	-	232	62289184	-	BruAb1_0207	-	transcriptional regulator TenA
194	 57.38	0	224971..225939	-	322	62289185	-	BruAb1_0208	-	ABC transporter, periplasmic substrate-binding protein
195	 60.95	0	225963..226574	-	203	62289186	thiE	BruAb1_0209	-	thiamine-phosphate pyrophosphorylase
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.