IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1364	 56.19	0	1439606..1440235	+	209	62290355	pncA	BruAb1_1459	-	PncA, pyrazinamidase/nicotinamidase
1365	 54.61	0	1440232..1441293	-	353	62290356	-	BruAb1_1460	-	hypothetical protein
1366	 53.93	0	1441640..1441906	+	88	62290357	-	BruAb1_1461	-	hypothetical protein
1367	 51.11	-1	1441862..1442041	-	59	62290358	-	BruAb1_1462	-	hypothetical protein
1368	 54.35	0	1442104..1443207	-	367	62290359	-	BruAb1_1463	-	choloylglycine hydrolase family protein
1369	 54.35	0	1443483..1444286	+	267	62290360	-	BruAb1_1464	-	hypothetical protein
1370	 50.00	-1	1444893..1445078	+	61	62290361	-	BruAb1_1465	-	hypothetical protein
1371	 43.42	-2	1445132..1445359	-	75	62290362	-	BruAb1_1466	-	hypothetical protein
1372	 60.17	0	1445486..1445839	+	117	62290363	-	BruAb1_1467	-	hypothetical protein
1373	 56.89	0	1446000..1446572	-	190	62290364	-	BruAb1_1468	-	hypothetical protein
1374	 54.95	0	1446808..1447302	+	164	62290365	-	BruAb1_1469	-	phage integrase family site specific recombinase
1375	 55.64	0	1447720..1448472	+	250	62290366	omp28	BruAb1_1470	-	Omp28, immunoreactive 28 kDa outer membrane protein
1376	 58.84	0	1448646..1448990	-	114	62290367	-	BruAb1_1471	-	hypothetical protein
1377	 54.47	0	1449234..1449692	-	152	62290368	-	BruAb1_1472	-	hypothetical protein
1378	 54.98	0	1449884..1450174	-	96	62290369	-	BruAb1_1473	-	hypothetical protein
1379	 56.86	0	1450198..1452216	-	672	62290370	rpoD	BruAb1_1474	-	RNA polymerase sigma factor RpoD
1380	 61.64	+1	1452684..1454651	-	655	62290371	dnaG	BruAb1_1475	-	DNA primase
1381	 59.39	0	1455021..1456697	+	558	62290372	-	BruAb1_1476	-	Na/Pi-cotransporter family protein
1382	 57.62	0	1456764..1457216	-	150	62290373	-	BruAb1_1477	-	hypothetical protein
1383	 60.70	0	1457596..1458819	+	407	62290374	carA	BruAb1_1478	-	carbamoyl phosphate synthase small subunit
1384	 60.95	0	1458991..1459917	-	308	62290375	-	BruAb1_1479	-	hypothetical protein
1385	 54.14	0	1460034..1460552	-	172	62290376	-	BruAb1_1480	-	hypothetical protein
1386	 57.30	0	1460638..1461342	+	234	62290377	-	BruAb1_1481	-	hypothetical protein
1387	 60.42	0	1461672..1465160	+	1162	62290378	carB	BruAb1_1482	-	carbamoyl phosphate synthase large subunit
1388	 46.61	-2	1465481..1465819	+	112	62290379	-	BruAb1_1483	-	hypothetical protein
1389	 58.47	0	1465877..1467742	-	621	62290380	-	BruAb1_1484	-	transporter
1390	 55.19	0	1467932..1468393	+	153	62290381	-	BruAb1_1485	-	MutT/nudix family protein
1391	 58.57	0	1468586..1468795	+	69	62290382	-	BruAb1_1486	-	cold-shock family protein
1392	 57.03	0	1468925..1469536	-	203	62290383	-	BruAb1_1487	-	glutathione S-transferase family protein
1393	 58.27	0	1469786..1470988	+	400	62290384	aspC	BruAb1_1488	-	aspartate aminotransferase
1394	 50.00	-1	1471008..1471193	+	61	62290385	-	BruAb1_1489	-	hypothetical protein
1395	 39.35	-2	1471190..1471405	+	71	62290386	-	BruAb1_1490	-	hypothetical protein
1396	 57.17	0	1471457..1472362	-	301	62290387	-	BruAb1_1491	-	LysR family transcriptional regulator
1397	 59.49	0	1472433..1473407	-	324	62290388	trxB	BruAb1_1492	-	TrxB, thioredoxin reductase
1398	 57.74	0	1473729..1475129	+	466	62290389	-	BruAb1_1493	-	cation transport protein
1399	 51.52	-1	1475136..1475300	+	54	62290390	-	BruAb1_1494	-	hypothetical protein
1400	 58.81	0	1475387..1475857	+	156	62290391	lrp-1	BruAb1_1495	-	Lrp-1, leucine-responsive regulatory protein
1401	 57.75	0	1475864..1476928	-	354	62290392	lpcC	BruAb1_1496	-	LpcC, lipopolysaccharide core biosynthesis mannosyltransferase
1402	 55.06	0	1476935..1477408	-	157	62290393	greA	BruAb1_1497	-	transcription elongation factor GreA
1403	 55.20	0	1477677..1478696	-	339	62290394	-	BruAb1_1498	-	hypothetical protein
1404	 60.75	0	1478888..1479799	+	303	62290395	-	BruAb1_1499	-	hypothetical protein
1405	 53.28	0	1479804..1480154	-	116	62290396	-	BruAb1_1500	-	hypothetical protein
1406	 59.87	0	1480432..1481343	+	303	62290397	-	BruAb1_1501	-	hypothetical protein
1407	 57.95	0	1481476..1481865	-	129	62290398	-	BruAb1_1502	-	long-chain acyl-CoA thioester hydrolase
1408	 58.47	0	1482087..1482842	+	251	62290399	-	BruAb1_1503	-	hypothetical protein
1409	 60.22	0	1482793..1485615	+	940	62290400	uvrB	BruAb1_1504	-	excinuclease ABC subunit B
1410	 60.45	0	1485747..1486550	+	267	62290401	-	BruAb1_1505	-	transglycosylase, degenerate
1411	 52.31	-1	1487045..1487260	+	71	62290402	-	BruAb1_1506	-	cold-shock family protein
1412	 61.79	+1	1487677..1488189	+	170	62290403	-	BruAb1_1507	-	hypothetical protein
1413	 58.30	0	1488248..1488904	-	218	62290404	-	BruAb1_1508	-	metallo-beta-lactamase family protein
1414	 58.16	0	1489118..1489399	-	93	62290405	-	BruAb1_1509	-	hypothetical protein
1415	 46.46	-2	1489574..1489870	+	98	62290406	-	BruAb1_1510	-	hypothetical protein
1416	 54.81	0	1489921..1490460	+	179	62290407	-	BruAb1_1511	-	MarR family transcriptional regulator
1417	 59.23	0	1490542..1491267	+	241	62290408	-	BruAb1_1512	-	OmpR transcriptional regulator
1418	 59.74	0	1491456..1492754	+	432	62290409	envZ	BruAb1_1513	-	EnvZ
1419	 54.89	0	1493186..1493533	-	115	62290410	csaA	BruAb1_1514	-	CsaA, csaA protein
1420	 56.11	0	1493672..1494334	-	220	62290411	-	BruAb1_1515	-	hypothetical protein
1421	 56.39	0	1494601..1494921	-	106	62290412	-	BruAb1_1516	-	hypothetical protein
1422	 61.58	+1	1495106..1495951	+	281	62290413	lgt	BruAb1_1517	-	prolipoprotein diacylglyceryl transferase
1423	 59.29	0	1495944..1497041	+	365	62290414	-	BruAb1_1518	-	hypothetical protein
1424	 58.15	0	1497275..1498072	+	265	62290415	-	BruAb1_1519	-	hypothetical protein
1425	 57.81	0	1498185..1499336	+	383	62290416	-	BruAb1_1520	-	M24 family peptidase
1426	 58.92	0	1499390..1499944	+	184	62290417	-	BruAb1_1521	-	lipoprotein
1427	 59.59	0	1500282..1501214	+	310	62290418	prsA	BruAb1_1522	-	ribose-phosphate pyrophosphokinase
1428	 62.97	+1	1501362..1502903	-	513	62290419	-	BruAb1_1523	-	hypothetical protein
1429	 58.33	0	1503595..1504218	+	207	62290420	-	BruAb1_1524	-	50S ribosomal protein L25/general stress protein Ctc
1430	 56.84	0	1504247..1504999	+	250	62290421	pth	BruAb1_1525	-	peptidyl-tRNA hydrolase
1431	 59.33	0	1505087..1506190	+	367	62290422	-	BruAb1_1526	-	translation-associated GTPase
1432	 57.68	0	1506252..1506752	+	166	62290423	-	BruAb1_1527	-	maoC-related protein
1433	 58.18	0	1506749..1507231	+	160	62290424	-	BruAb1_1528	-	maoC-related protein
1434	 56.51	0	1507273..1507833	-	186	62290425	apt	BruAb1_1529	-	adenine phosphoribosyltransferase
1435	 56.98	0	1508141..1509028	-	295	62290426	-	BruAb1_1530	-	ubiquinol-cytochrome c reductase, cytochrome c1
1436	 57.04	0	1509042..1510340	-	432	62290427	petB	BruAb1_1531	-	PetB, ubiquinol-cytochrome c reductase, cytochrome b
1437	 58.16	0	1510362..1510925	-	187	62290428	-	BruAb1_1532	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
1438	 58.47	0	1511177..1513042	-	621	62290429	-	BruAb1_1533	-	ABC transporter ATP-binding/permease
1439	 57.25	0	1513199..1515067	-	622	62290430	-	BruAb1_1534	-	ABC transporter, ATP-binding protein
1440	 58.33	0	1515200..1515679	+	159	62290431	-	BruAb1_1535	-	RNA methyltransferase
1441	 57.51	0	1515789..1516826	+	345	62290432	-	BruAb1_1536	-	purine nucleoside permease
1442	 54.90	0	1516829..1516930	-	33	62290433	-	BruAb1_1537	-	hypothetical protein
1443	 62.07	+1	1516938..1517198	-	86	62290434	-	BruAb1_1538	-	hypothetical protein
1444	 57.79	0	1517492..1518403	+	303	62290435	hemF	BruAb1_1539	-	coproporphyrinogen III oxidase
1445	 60.81	0	1518437..1518931	-	164	62290436	-	BruAb1_1540	-	acetyltransferase
1446	 59.28	0	1519964..1521235	-	423	62290437	-	BruAb1_1542	-	polyA polymerase family protein
1447	 61.06	0	1521232..1521855	-	207	62290438	-	BruAb1_1543	-	MutT/nudix family protein
1448	 60.21	0	1521852..1522517	-	221	62290439	-	BruAb1_1544	-	hypothetical protein
1449	 62.10	+1	1522637..1523644	+	335	62290440	moxR	BruAb1_1545	-	MoxR, moxR protein
1450	 63.34	+1	1523644..1524576	+	310	62290441	-	BruAb1_1546	-	hypothetical protein
1451	 61.57	+1	1524573..1527419	+	948	62290442	-	BruAb1_1547	-	hypothetical protein
1452	 60.53	0	1527483..1529552	+	689	62290443	-	BruAb1_1548	-	hypothetical protein
1453	 63.12	+1	1529620..1530126	-	168	62290444	-	BruAb1_1549	-	acetyltransferase
1454	 56.81	0	1530430..1531413	+	327	62290445	-	BruAb1_1550	-	glutathione S-transferase domain-containing protein
1455	 56.14	0	1531561..1532244	+	227	62290446	-	BruAb1_1551	-	hypothetical protein
1456	 53.51	0	1532278..1532733	-	151	62290447	-	BruAb1_1552	-	MutT/nudix family protein
1457	 59.91	0	1532842..1533744	+	300	62290448	-	BruAb1_1553	-	hypothetical protein
1458	 51.94	-1	1533738..1533866	-	42	62290449	-	BruAb1_1554	-	hypothetical protein
1459	 57.25	0	1533945..1535612	-	555	161611211	leuA	BruAb1_1555	-	2-isopropylmalate synthase
1460	 58.49	0	1535804..1535962	-	52	62290451	-	BruAb1_1556	-	hypothetical protein
1461	 58.53	0	1535977..1536885	-	302	62290452	-	BruAb1_1557	-	cation efflux family protein
1462	 58.38	0	1537355..1539550	-	731	62290453	trpE	BruAb1_1558	-	anthranilate synthase
1463	 55.19	0	1540229..1540690	+	153	62290454	lrp-2	BruAb1_1559	-	Lrp-2, leucine-responsive regulatory protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.