IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1282	 57.26	0	1351864..1353096	-	410	62290273	-	BruAb1_1374	-	aminotransferase, class I
1283	 49.65	-1	1353229..1353510	-	93	62290274	-	BruAb1_1375	-	hypothetical protein
1284	 58.24	0	1353532..1354551	-	339	62290275	ilvC	BruAb1_1376	-	ketol-acid reductoisomerase
1285	 59.97	0	1354607..1355248	-	213	62290276	-	BruAb1_1377	-	TetR family transcriptional regulator
1286	 48.96	-1	1355351..1355446	+	31	62290277	-	BruAb1_1378	-	hypothetical protein
1287	 58.28	0	1355457..1357412	-	651	62290278	-	BruAb1_1379	-	potassium uptake protein
1288	 57.23	0	1357555..1357713	-	52	62290279	-	BruAb1_1380	-	hypothetical protein
1289	 59.65	0	1357782..1358522	-	246	62290280	-	BruAb1_1381	-	pyridoxal phosphate biosynthetic protein PdxJ
1290	 52.99	0	1358819..1359220	+	133	62290281	-	BruAb1_1382	-	hypothetical protein
1291	 58.47	0	1359221..1360342	-	373	62290282	-	BruAb1_1383	-	hypothetical protein
1292	 58.46	0	1360526..1361098	-	190	62290283	ilvH	BruAb1_1384	-	acetolactate synthase 3 regulatory subunit
1293	 58.50	0	1361117..1362940	-	607	62290284	ilvB	BruAb1_1385	-	acetolactate synthase 3 catalytic subunit
1294	 59.59	0	1363188..1364120	-	310	62290285	miaA	BruAb1_1386	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1295	 61.06	0	1364324..1365037	+	237	62290286	serB	BruAb1_1387	-	SerB, phosphoserine phosphatase
1296	 59.22	0	1365078..1366259	-	393	62290287	-	BruAb1_1388	-	hypothetical protein
1297	 58.67	0	1366389..1367963	-	524	62290288	-	BruAb1_1389	-	serine protease Do
1298	 60.22	0	1368187..1368372	-	61	62290289	-	BruAb1_1390	-	hypothetical protein
1299	 60.13	0	1368392..1369294	-	300	62290290	hflC	BruAb1_1391	-	HflC, hflC protein
1300	 58.96	0	1369294..1370448	-	384	62290291	hlfK	BruAb1_1392	-	HflK, hflK protein
1301	 57.80	0	1370573..1371091	-	172	62290292	folA	BruAb1_1393	-	FolA, dihydrofolate reductase
1302	 55.47	0	1371094..1371888	-	264	62290293	thyA	BruAb1_1394	-	thymidylate synthase
1303	 57.69	0	1371989..1372300	-	103	62290294	-	BruAb1_1395	-	hypothetical protein
1304	 51.70	-1	1374102..1374248	-	48	62290295	-	BruAb1_1397	-	hypothetical protein
1305	 56.61	0	1374380..1375105	+	241	62290296	-	BruAb1_1398	-	TetR family transcriptional regulator
1306	 54.21	0	1375186..1375755	+	189	62290297	-	BruAb1_1399	-	hypothetical protein
1307	 54.24	0	1375868..1376044	+	58	62290298	-	BruAb1_1400	-	hypothetical protein
1308	 52.24	-1	1376136..1376336	+	66	62290299	-	BruAb1_1401	-	hypothetical protein
1309	 58.72	0	1376333..1376659	+	108	62290300	-	BruAb1_1402	-	hypothetical protein
1310	 60.12	0	1376613..1380356	-	1247	62290301	-	BruAb1_1403	-	hypothetical protein
1311	 48.23	-2	1380411..1380551	-	46	62290302	-	BruAb1_1404	-	hypothetical protein
1312	 59.70	0	1380548..1381954	-	468	62290303	-	BruAb1_1405	-	oxidoreductase
1313	 60.78	0	1381979..1382488	-	169	62290304	-	BruAb1_1406	-	hypothetical protein
1314	 60.35	0	1382608..1383684	+	358	62290305	-	BruAb1_1407	-	serine/threonine protein kinase
1315	 59.37	0	1383743..1386319	+	858	62290306	-	BruAb1_1408	-	DNA helicase II
1316	 54.22	0	1386393..1386890	-	165	62290307	-	BruAb1_1409	-	hypothetical protein
1317	 57.25	0	1386955..1387644	-	229	62290308	-	BruAb1_1410	-	antibiotic acetyltransferase
1318	 55.61	0	1387753..1388340	+	195	62290309	-	BruAb1_1411	-	SCO1/SenC family protein
1319	 58.28	0	1388378..1389235	+	285	62290310	prmA	BruAb1_1412	-	ribosomal protein L11 methyltransferase
1320	 59.44	0	1389284..1391110	+	608	62290311	-	BruAb1_1413	-	aminopeptidase P
1321	 56.88	0	1391111..1391815	-	234	62290312	-	BruAb1_1414	-	hypothetical protein
1322	 59.95	0	1391815..1393974	-	719	62290313	ligA	BruAb1_1415	-	NAD-dependent DNA ligase LigA
1323	 62.26	+1	1394160..1395839	-	559	62290314	recN	BruAb1_1416	-	RecN, DNA repair protein
1324	 56.48	0	1395852..1396715	-	287	62290315	comL	BruAb1_1417	-	competence protein ComL
1325	 49.19	-1	1396817..1397062	+	81	62290316	-	BruAb1_1418	-	hypothetical protein
1326	 56.33	0	1397122..1397982	-	286	62290317	lpxC	BruAb1_1419	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1327	 63.90	+1	1398522..1400222	-	566	62290318	ftsZ	BruAb1_1420	-	cell division protein FtsZ
1328	 60.70	0	1400319..1401641	-	440	62290319	ftsA	BruAb1_1421	-	FtsA, cell division protein FtsA
1329	 58.13	0	1401638..1402504	-	288	62290320	-	BruAb1_1422	-	cell division protein FtsQ
1330	 55.45	0	1402561..1403487	-	308	62290321	ddl	BruAb1_1423	-	D-alanine--D-alanine ligase
1331	 61.09	0	1403730..1404698	-	322	62290322	murB	BruAb1_1424	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1332	 61.09	0	1404698..1406113	-	471	62290323	murC	BruAb1_1425	-	UDP-N-acetylmuramate--L-alanine ligase
1333	 61.84	+1	1406110..1407249	-	379	62290324	murG	BruAb1_1426	-	N-acetylglucosaminyl transferase
1334	 59.15	0	1407476..1408633	-	385	62290325	ftsW	BruAb1_1427	-	FtsW, cell division protein
1335	 60.54	0	1408633..1410036	-	467	62290326	murD	BruAb1_1428	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1336	 57.25	0	1410049..1411131	-	360	62290327	mraY	BruAb1_1429	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1337	 58.99	0	1411158..1412603	-	481	62290328	murF	BruAb1_1430	-	MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
1338	 59.92	0	1412600..1414066	-	488	62290329	murE	BruAb1_1431	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1339	 59.38	0	1414127..1415950	-	607	62290330	-	BruAb1_1432	-	penicillin-binding protein
1340	 56.52	0	1415941..1416354	-	137	62290331	-	BruAb1_1433	-	hypothetical protein
1341	 61.38	+1	1416359..1417399	-	346	62290332	mraW	BruAb1_1434	-	S-adenosyl-methyltransferase MraW
1342	 51.48	-1	1417377..1417646	+	89	62290333	-	BruAb1_1435	-	hypothetical protein
1343	 58.72	0	1417826..1419196	+	456	62290334	-	BruAb1_1436	-	manganese transport protein MntH
1344	 62.18	+1	1419389..1419901	+	170	62290335	-	BruAb1_1437	-	hypothetical protein
1345	 55.19	0	1419898..1420542	-	214	62290336	-	BruAb1_1438	-	transglycosylase SLT domain-containing protein
1346	 55.39	0	1420883..1421689	-	268	62290337	-	BruAb1_1439	-	N-acetylmuramoyl-L-alanine amidase
1347	 54.29	0	1421686..1422396	-	236	62290338	-	BruAb1_1440	-	DnaJ domain-containing protein
1348	 59.01	0	1422516..1422920	-	134	62290339	-	BruAb1_1441	-	hypothetical protein
1349	 59.35	0	1423224..1424057	+	277	62290340	-	BruAb1_1442	-	glycosy hydrolase family protein
1350	 58.56	0	1424178..1425410	+	410	62290341	-	BruAb1_1443	-	transglycolase
1351	 58.87	0	1425472..1426407	+	311	62290342	-	BruAb1_1444	-	transporter
1352	 57.68	0	1426842..1427753	-	303	62290343	metF	BruAb1_1445	-	MetF, 5,10-methylenetetrahydrofolate reductase
1353	 60.14	0	1427799..1428824	-	341	62290344	-	BruAb1_1446	-	ArsR family transcriptional regulator
1354	 58.64	0	1428944..1429267	+	107	62290345	-	BruAb1_1447	-	hypothetical protein
1355	 57.01	0	1429322..1430647	-	441	62290346	-	BruAb1_1448	-	metabolite-proton symporter
1356	 54.63	0	1430802..1430909	+	35	62290347	-	BruAb1_1449	-	hypothetical protein
1357	 56.12	0	1431922..1433571	-	549	62290348	-	BruAb1_1451	-	putative ABC transporter ATP-binding protein
1358	 61.11	0	1433651..1433830	-	59	62290349	-	BruAb1_1452	-	hypothetical protein
1359	 57.14	0	1434067..1435011	+	314	62290350	-	BruAb1_1453	-	hypothetical protein
1360	 56.48	0	1435808..1436494	-	228	62290351	-	BruAb1_1455	-	hypothetical protein
1361	 57.13	0	1436845..1438092	+	415	62290352	-	BruAb1_1456	-	Rieske 2Fe-2S family protein
1362	 59.25	0	1438126..1439244	+	372	62290353	-	BruAb1_1457	-	NADH oxidoreductase
1363	 55.86	0	1439247..1439468	-	73	62290354	phnA	BruAb1_1458	-	PhnA protein
1364	 56.19	0	1439606..1440235	+	209	62290355	pncA	BruAb1_1459	-	PncA, pyrazinamidase/nicotinamidase
1365	 54.61	0	1440232..1441293	-	353	62290356	-	BruAb1_1460	-	hypothetical protein
1366	 53.93	0	1441640..1441906	+	88	62290357	-	BruAb1_1461	-	hypothetical protein
1367	 51.11	-1	1441862..1442041	-	59	62290358	-	BruAb1_1462	-	hypothetical protein
1368	 54.35	0	1442104..1443207	-	367	62290359	-	BruAb1_1463	-	choloylglycine hydrolase family protein
1369	 54.35	0	1443483..1444286	+	267	62290360	-	BruAb1_1464	-	hypothetical protein
1370	 50.00	-1	1444893..1445078	+	61	62290361	-	BruAb1_1465	-	hypothetical protein
1371	 43.42	-2	1445132..1445359	-	75	62290362	-	BruAb1_1466	-	hypothetical protein
1372	 60.17	0	1445486..1445839	+	117	62290363	-	BruAb1_1467	-	hypothetical protein
1373	 56.89	0	1446000..1446572	-	190	62290364	-	BruAb1_1468	-	hypothetical protein
1374	 54.95	0	1446808..1447302	+	164	62290365	-	BruAb1_1469	-	phage integrase family site specific recombinase
1375	 55.64	0	1447720..1448472	+	250	62290366	omp28	BruAb1_1470	-	Omp28, immunoreactive 28 kDa outer membrane protein
1376	 58.84	0	1448646..1448990	-	114	62290367	-	BruAb1_1471	-	hypothetical protein
1377	 54.47	0	1449234..1449692	-	152	62290368	-	BruAb1_1472	-	hypothetical protein
1378	 54.98	0	1449884..1450174	-	96	62290369	-	BruAb1_1473	-	hypothetical protein
1379	 56.86	0	1450198..1452216	-	672	62290370	rpoD	BruAb1_1474	-	RNA polymerase sigma factor RpoD
1380	 61.64	+1	1452684..1454651	-	655	62290371	dnaG	BruAb1_1475	-	DNA primase
1381	 59.39	0	1455021..1456697	+	558	62290372	-	BruAb1_1476	-	Na/Pi-cotransporter family protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.