IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1222	 61.74	+1	1287602..1288291	-	229	62290213	-	BruAb1_1310	-	hypothetical protein
1223	 57.14	0	1288408..1288596	-	62	62290214	-	BruAb1_1311	-	hypothetical protein
1224	 60.67	0	1288910..1290361	-	483	62290215	cobQ	BruAb1_1312	-	cobyric acid synthase
1225	 53.33	0	1290372..1290521	-	49	62290216	-	BruAb1_1313	-	hypothetical protein
1226	 57.69	0	1290637..1291794	+	385	62290217	-	BruAb1_1314	-	acyl-CoA dehydrogenase
1227	 60.61	0	1291826..1292716	+	296	62290218	mmsB	BruAb1_1315	-	MmsB, 3-hydroxyisobutyrate dehydrogenase
1228	 45.83	-2	1292952..1293119	-	55	62290219	-	BruAb1_1316	-	hypothetical protein
1229	 53.25	0	1293112..1293357	-	81	62290220	-	BruAb1_1317	-	hypothetical protein
1230	 59.07	0	1293426..1294346	-	306	62290221	-	BruAb1_1318	-	LysR family transcriptional regulator
1231	 57.56	0	1294792..1295790	+	332	62290222	-	BruAb1_1319	-	AraC family transcriptional regulator
1232	 54.98	0	1298703..1298993	-	96	62290223	-	BruAb1_1321	-	hypothetical protein
1233	 57.35	0	1299100..1301676	-	858	62290224	-	BruAb1_1322	-	membrane protein
1234	 56.41	0	1301806..1302390	-	194	62290225	-	BruAb1_1323	-	hypothetical protein
1235	 59.34	0	1302442..1304979	+	845	62290226	-	BruAb1_1324	-	bifunctional preprotein translocase subunit SecD/SecF
1236	 59.46	0	1305057..1306916	+	619	62290227	-	BruAb1_1325	-	potassium efflux system family protein
1237	 55.35	0	1306916..1307887	+	323	62290228	-	BruAb1_1326	-	hypothetical protein
1238	 56.32	0	1308765..1309595	-	276	62290229	cysW-2	BruAb1_1328	-	CysW-2, sulfate ABC transporter, permease protein
1239	 58.82	0	1309582..1310448	-	288	62290230	-	BruAb1_1329	-	permease
1240	 55.52	0	1310575..1311579	-	334	62290231	-	BruAb1_1330	-	sulfate ABC transporter sulfate-binding protein
1241	 52.69	-1	1311845..1312030	-	61	62290232	-	BruAb1_1331	-	hypothetical protein
1242	 58.95	0	1312210..1313778	-	522	62290233	-	BruAb1_1332	-	CBS domain-containing protein
1243	 59.58	0	1314196..1314858	-	220	62290234	-	BruAb1_1333	-	dedA family protein
1244	 53.33	0	1315741..1316295	+	184	62290235	-	BruAb1_1334	-	acid-shock protein
1245	 54.37	0	1316429..1316851	-	140	62290236	fucU	BruAb1_1335	-	FucU, fucose operon fucU protein
1246	 59.26	0	1316945..1317754	-	269	62290237	-	BruAb1_1336	-	short chain dehydrogenase
1247	 58.46	0	1317769..1318548	-	259	62290238	-	BruAb1_1337	-	sugar ABC transporter, ATP-binding protein
1248	 59.14	0	1319721..1319813	-	30	62290239	-	BruAb1_1339	-	hypothetical protein
1249	 59.68	0	1319975..1320904	-	309	62290240	-	BruAb1_1340	-	sugar ABC transporter, periplasmic sugar-binding protein
1250	 57.44	0	1321283..1322398	+	371	62290241	-	BruAb1_1341	-	oxidoreductase
1251	 62.16	+1	1322395..1323171	-	258	62290242	-	BruAb1_1342	-	iron compound ABC transporter, ATP-binding protein
1252	 62.08	+1	1323168..1324169	-	333	62290243	-	BruAb1_1343	-	iron compound ABC transporter, permease protein
1253	 60.48	0	1324162..1325001	-	279	62290244	-	BruAb1_1344	-	iron compound ABC transporter, periplasmic iron compound-binding protein
1254	 56.58	0	1325015..1326877	-	620	62290245	-	BruAb1_1345	-	iron compound TonB-dependent receptor
1255	 53.21	0	1327166..1327321	-	51	62290246	-	BruAb1_1346	-	hypothetical protein
1256	 57.42	0	1327359..1328483	-	374	62290247	-	BruAb1_1347	-	ABC transporter permease
1257	 60.96	0	1331251..1332318	-	355	62290248	-	BruAb1_1349	-	HlyD family secretion protein
1258	 55.27	0	1332555..1332791	-	78	62290249	-	BruAb1_1350	-	hypothetical protein
1259	 54.48	0	1332864..1334159	-	431	62290250	-	BruAb1_1351	-	hypothetical protein
1260	 55.37	0	1334738..1334914	-	58	62290251	-	BruAb1_1352	-	hypothetical protein
1261	 57.10	0	1334974..1335276	+	100	62290252	ureA	BruAb1_1353	-	urease subunit gamma
1262	 58.13	0	1335325..1335804	+	159	62290253	ureB	BruAb1_1354	-	urease subunit beta
1263	 59.23	0	1335844..1337565	+	573	62290254	ureC	BruAb1_1355	-	urease subunit alpha
1264	 58.55	0	1337613..1338191	+	192	62290255	-	BruAb1_1356	-	urease accessory protein UreE
1265	 58.88	0	1338188..1338919	+	243	62290256	-	BruAb1_1357	-	urease accessory protein UreF
1266	 56.34	0	1338935..1339573	+	212	62290257	ureG-2	BruAb1_1358	-	UreG-2, urease accessory protein UreG
1267	 57.92	0	1339573..1340487	+	304	62290258	ureD-2	BruAb1_1359	-	UreD-2, urease accessory protein
1268	 60.19	0	1340497..1341546	+	349	62290259	-	BruAb1_1360	-	urea transporter
1269	 57.44	0	1341573..1342331	+	252	62290260	-	BruAb1_1361	-	lipoprotein
1270	 61.64	+1	1342351..1342986	+	211	62290261	cbiM	BruAb1_1362	-	cobalt transport protein CbiM
1271	 62.52	+1	1342983..1343609	+	208	62290262	-	BruAb1_1363	-	hypothetical protein
1272	 60.13	0	1343606..1344370	+	254	62290263	-	BruAb1_1364	-	cobalt ABC transporter, permease protein
1273	 57.22	0	1344367..1345086	+	239	62290264	-	BruAb1_1365	-	cobalt ABC transporter, ATP-binding protein
1274	 57.81	0	1345107..1345919	-	270	62290265	-	BruAb1_1366	-	CrcB family protein
1275	 56.41	0	1345932..1346321	-	129	62290266	ccrB	BruAb1_1367	-	camphor resistance protein CrcB
1276	 56.24	0	1346590..1347615	+	341	62290267	-	BruAb1_1368	-	hypothetical protein
1277	 51.95	-1	1347748..1348182	-	144	62290268	-	BruAb1_1369	-	hypothetical protein
1278	 57.82	0	1348334..1349260	-	308	62290269	-	BruAb1_1370	-	PhzF family phenazine biosynthesis protein
1279	 59.02	0	1349365..1350096	-	243	62290270	-	BruAb1_1371	-	hypothetical protein
1280	 55.68	0	1350116..1351225	-	369	62290271	-	BruAb1_1372	-	hypothetical protein
1281	 55.04	0	1351302..1351817	+	171	62290272	-	BruAb1_1373	-	hypothetical protein
1282	 57.26	0	1351864..1353096	-	410	62290273	-	BruAb1_1374	-	aminotransferase, class I
1283	 49.65	-1	1353229..1353510	-	93	62290274	-	BruAb1_1375	-	hypothetical protein
1284	 58.24	0	1353532..1354551	-	339	62290275	ilvC	BruAb1_1376	-	ketol-acid reductoisomerase
1285	 59.97	0	1354607..1355248	-	213	62290276	-	BruAb1_1377	-	TetR family transcriptional regulator
1286	 48.96	-1	1355351..1355446	+	31	62290277	-	BruAb1_1378	-	hypothetical protein
1287	 58.28	0	1355457..1357412	-	651	62290278	-	BruAb1_1379	-	potassium uptake protein
1288	 57.23	0	1357555..1357713	-	52	62290279	-	BruAb1_1380	-	hypothetical protein
1289	 59.65	0	1357782..1358522	-	246	62290280	-	BruAb1_1381	-	pyridoxal phosphate biosynthetic protein PdxJ
1290	 52.99	0	1358819..1359220	+	133	62290281	-	BruAb1_1382	-	hypothetical protein
1291	 58.47	0	1359221..1360342	-	373	62290282	-	BruAb1_1383	-	hypothetical protein
1292	 58.46	0	1360526..1361098	-	190	62290283	ilvH	BruAb1_1384	-	acetolactate synthase 3 regulatory subunit
1293	 58.50	0	1361117..1362940	-	607	62290284	ilvB	BruAb1_1385	-	acetolactate synthase 3 catalytic subunit
1294	 59.59	0	1363188..1364120	-	310	62290285	miaA	BruAb1_1386	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1295	 61.06	0	1364324..1365037	+	237	62290286	serB	BruAb1_1387	-	SerB, phosphoserine phosphatase
1296	 59.22	0	1365078..1366259	-	393	62290287	-	BruAb1_1388	-	hypothetical protein
1297	 58.67	0	1366389..1367963	-	524	62290288	-	BruAb1_1389	-	serine protease Do
1298	 60.22	0	1368187..1368372	-	61	62290289	-	BruAb1_1390	-	hypothetical protein
1299	 60.13	0	1368392..1369294	-	300	62290290	hflC	BruAb1_1391	-	HflC, hflC protein
1300	 58.96	0	1369294..1370448	-	384	62290291	hlfK	BruAb1_1392	-	HflK, hflK protein
1301	 57.80	0	1370573..1371091	-	172	62290292	folA	BruAb1_1393	-	FolA, dihydrofolate reductase
1302	 55.47	0	1371094..1371888	-	264	62290293	thyA	BruAb1_1394	-	thymidylate synthase
1303	 57.69	0	1371989..1372300	-	103	62290294	-	BruAb1_1395	-	hypothetical protein
1304	 51.70	-1	1374102..1374248	-	48	62290295	-	BruAb1_1397	-	hypothetical protein
1305	 56.61	0	1374380..1375105	+	241	62290296	-	BruAb1_1398	-	TetR family transcriptional regulator
1306	 54.21	0	1375186..1375755	+	189	62290297	-	BruAb1_1399	-	hypothetical protein
1307	 54.24	0	1375868..1376044	+	58	62290298	-	BruAb1_1400	-	hypothetical protein
1308	 52.24	-1	1376136..1376336	+	66	62290299	-	BruAb1_1401	-	hypothetical protein
1309	 58.72	0	1376333..1376659	+	108	62290300	-	BruAb1_1402	-	hypothetical protein
1310	 60.12	0	1376613..1380356	-	1247	62290301	-	BruAb1_1403	-	hypothetical protein
1311	 48.23	-2	1380411..1380551	-	46	62290302	-	BruAb1_1404	-	hypothetical protein
1312	 59.70	0	1380548..1381954	-	468	62290303	-	BruAb1_1405	-	oxidoreductase
1313	 60.78	0	1381979..1382488	-	169	62290304	-	BruAb1_1406	-	hypothetical protein
1314	 60.35	0	1382608..1383684	+	358	62290305	-	BruAb1_1407	-	serine/threonine protein kinase
1315	 59.37	0	1383743..1386319	+	858	62290306	-	BruAb1_1408	-	DNA helicase II
1316	 54.22	0	1386393..1386890	-	165	62290307	-	BruAb1_1409	-	hypothetical protein
1317	 57.25	0	1386955..1387644	-	229	62290308	-	BruAb1_1410	-	antibiotic acetyltransferase
1318	 55.61	0	1387753..1388340	+	195	62290309	-	BruAb1_1411	-	SCO1/SenC family protein
1319	 58.28	0	1388378..1389235	+	285	62290310	prmA	BruAb1_1412	-	ribosomal protein L11 methyltransferase
1320	 59.44	0	1389284..1391110	+	608	62290311	-	BruAb1_1413	-	aminopeptidase P
1321	 56.88	0	1391111..1391815	-	234	62290312	-	BruAb1_1414	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.