IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1182	 54.37	0	1245987..1246466	-	159	62290173	-	BruAb1_1267	-	hypothetical protein
1183	 59.79	0	1246840..1247421	-	193	62290174	-	BruAb1_1268	-	cold-shock family protein
1184	 44.44	-2	1247545..1247715	-	56	62290175	-	BruAb1_1269	-	hypothetical protein
1185	 58.50	0	1247784..1248224	+	146	62290176	gloA	BruAb1_1270	-	GloA, lactoylglutathione lyase
1186	 61.57	+1	1249464..1251248	-	594	62290177	recJ	BruAb1_1272	-	RecJ, single-stranded-DNA-specific exonuclease RecJ
1187	 53.58	0	1251298..1252359	-	353	62290178	ddlA	BruAb1_1273	-	DdlA, D-alanine--D-alanine ligase A
1188	 61.09	0	1252662..1253648	-	328	62290179	glpX	BruAb1_1274	-	fructose 1,6-bisphosphatase II
1189	 58.86	0	1254041..1255360	-	439	62290180	hom	BruAb1_1275	-	homoserine dehydrogenase
1190	 58.56	0	1255496..1256716	-	406	62290181	-	BruAb1_1276	-	aminotransferase
1191	 59.95	0	1256847..1257278	-	143	62290182	-	BruAb1_1277	-	hypothetical protein
1192	 57.61	0	1257683..1258963	+	426	62290183	-	BruAb1_1278	-	hypothetical protein
1193	 55.79	0	1259573..1259857	+	94	62290184	-	BruAb1_1279	-	hypothetical protein
1194	 54.39	0	1259991..1260104	+	37	62290185	-	BruAb1_1280	-	hypothetical protein
1195	 44.09	-2	1260079..1260171	+	30	62290186	-	BruAb1_1281	-	hypothetical protein
1196	 58.02	0	1260180..1260896	+	238	62290187	sfsA	BruAb1_1282	-	sugar fermentation stimulation protein A
1197	 57.37	0	1260896..1261723	+	275	62290188	map	BruAb1_1283	-	methionine aminopeptidase
1198	 60.40	0	1261779..1262528	+	249	62290189	radC	BruAb1_1284	-	DNA repair protein RadC
1199	 58.22	0	1262730..1263368	+	212	62290190	-	BruAb1_1285	-	hypothetical protein
1200	 61.28	0	1263657..1264862	-	401	62290191	cobL	BruAb1_1286	-	CobL, precorrin-6Y C5,15-methyltransferase
1201	 59.01	0	1264939..1266231	+	430	62290192	-	BruAb1_1287	-	nitrite reductase family protein
1202	 62.04	+1	1266241..1266867	+	208	62290193	cobH	BruAb1_1288	-	precorrin-8X methylmutase
1203	 58.64	0	1266867..1267601	+	244	62290194	cobI	BruAb1_1289	-	precorrin-2 C(20)-methyltransferase
1204	 60.65	0	1267598..1269292	+	564	62290195	-	BruAb1_1290	-	CbiG, precorrin-3B C17-methyltransferase
1205	 61.97	+1	1269348..1269815	-	155	62290196	-	BruAb1_1291	-	hypothetical protein
1206	 59.98	0	1271502..1272593	+	363	62290197	-	BruAb1_1294	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
1207	 59.24	0	1272579..1273574	-	331	62290198	cobD	BruAb1_1295	-	cobalamin biosynthesis protein
1208	 60.66	0	1273599..1274597	-	332	62290199	cobC	BruAb1_1296	-	CobC, cobC protein
1209	 60.49	0	1274594..1275904	-	436	62290200	cobB	BruAb1_1297	-	cobyrinic acid a,c-diamide synthase
1210	 62.07	+1	1275901..1276749	-	282	62290201	cobA	BruAb1_1298	-	CobA, uroporphyrin-III C-methyltransferase
1211	 60.07	0	1276840..1277946	+	368	62290202	cbiD	BruAb1_1299	-	cobalt-precorrin-6A synthase
1212	 61.31	0	1277933..1278679	+	248	62290203	cobK	BruAb1_1300	-	cobalt-precorrin-6x reductase
1213	 58.23	0	1278668..1279426	-	252	62290204	cobM	BruAb1_1301	-	CobM, precorrin-4 C11-methyltransferase
1214	 58.59	0	1279486..1279881	-	131	62290205	-	BruAb1_1302	-	precorrin-3B C17-methyltransferase
1215	 54.81	0	1279874..1280320	-	148	62290206	-	BruAb1_1303	-	hypothetical protein
1216	 59.41	0	1280480..1281265	+	261	62290207	-	BruAb1_1304	-	hypothetical protein
1217	 59.59	0	1281262..1281600	-	112	62290208	-	BruAb1_1305	-	hypothetical protein
1218	 56.03	0	1281600..1282238	-	212	62290209	cobO	BruAb1_1306	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1219	 62.37	+1	1282231..1286022	-	1263	62290210	cobN	BruAb1_1307	-	cobaltochelatase
1220	 57.43	0	1286022..1287071	-	349	62290211	-	BruAb1_1308	-	cobalamin biosynthesis protein CobW
1221	 60.15	0	1287075..1287596	-	173	62290212	cobU	BruAb1_1309	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
1222	 61.74	+1	1287602..1288291	-	229	62290213	-	BruAb1_1310	-	hypothetical protein
1223	 57.14	0	1288408..1288596	-	62	62290214	-	BruAb1_1311	-	hypothetical protein
1224	 60.67	0	1288910..1290361	-	483	62290215	cobQ	BruAb1_1312	-	cobyric acid synthase
1225	 53.33	0	1290372..1290521	-	49	62290216	-	BruAb1_1313	-	hypothetical protein
1226	 57.69	0	1290637..1291794	+	385	62290217	-	BruAb1_1314	-	acyl-CoA dehydrogenase
1227	 60.61	0	1291826..1292716	+	296	62290218	mmsB	BruAb1_1315	-	MmsB, 3-hydroxyisobutyrate dehydrogenase
1228	 45.83	-2	1292952..1293119	-	55	62290219	-	BruAb1_1316	-	hypothetical protein
1229	 53.25	0	1293112..1293357	-	81	62290220	-	BruAb1_1317	-	hypothetical protein
1230	 59.07	0	1293426..1294346	-	306	62290221	-	BruAb1_1318	-	LysR family transcriptional regulator
1231	 57.56	0	1294792..1295790	+	332	62290222	-	BruAb1_1319	-	AraC family transcriptional regulator
1232	 54.98	0	1298703..1298993	-	96	62290223	-	BruAb1_1321	-	hypothetical protein
1233	 57.35	0	1299100..1301676	-	858	62290224	-	BruAb1_1322	-	membrane protein
1234	 56.41	0	1301806..1302390	-	194	62290225	-	BruAb1_1323	-	hypothetical protein
1235	 59.34	0	1302442..1304979	+	845	62290226	-	BruAb1_1324	-	bifunctional preprotein translocase subunit SecD/SecF
1236	 59.46	0	1305057..1306916	+	619	62290227	-	BruAb1_1325	-	potassium efflux system family protein
1237	 55.35	0	1306916..1307887	+	323	62290228	-	BruAb1_1326	-	hypothetical protein
1238	 56.32	0	1308765..1309595	-	276	62290229	cysW-2	BruAb1_1328	-	CysW-2, sulfate ABC transporter, permease protein
1239	 58.82	0	1309582..1310448	-	288	62290230	-	BruAb1_1329	-	permease
1240	 55.52	0	1310575..1311579	-	334	62290231	-	BruAb1_1330	-	sulfate ABC transporter sulfate-binding protein
1241	 52.69	-1	1311845..1312030	-	61	62290232	-	BruAb1_1331	-	hypothetical protein
1242	 58.95	0	1312210..1313778	-	522	62290233	-	BruAb1_1332	-	CBS domain-containing protein
1243	 59.58	0	1314196..1314858	-	220	62290234	-	BruAb1_1333	-	dedA family protein
1244	 53.33	0	1315741..1316295	+	184	62290235	-	BruAb1_1334	-	acid-shock protein
1245	 54.37	0	1316429..1316851	-	140	62290236	fucU	BruAb1_1335	-	FucU, fucose operon fucU protein
1246	 59.26	0	1316945..1317754	-	269	62290237	-	BruAb1_1336	-	short chain dehydrogenase
1247	 58.46	0	1317769..1318548	-	259	62290238	-	BruAb1_1337	-	sugar ABC transporter, ATP-binding protein
1248	 59.14	0	1319721..1319813	-	30	62290239	-	BruAb1_1339	-	hypothetical protein
1249	 59.68	0	1319975..1320904	-	309	62290240	-	BruAb1_1340	-	sugar ABC transporter, periplasmic sugar-binding protein
1250	 57.44	0	1321283..1322398	+	371	62290241	-	BruAb1_1341	-	oxidoreductase
1251	 62.16	+1	1322395..1323171	-	258	62290242	-	BruAb1_1342	-	iron compound ABC transporter, ATP-binding protein
1252	 62.08	+1	1323168..1324169	-	333	62290243	-	BruAb1_1343	-	iron compound ABC transporter, permease protein
1253	 60.48	0	1324162..1325001	-	279	62290244	-	BruAb1_1344	-	iron compound ABC transporter, periplasmic iron compound-binding protein
1254	 56.58	0	1325015..1326877	-	620	62290245	-	BruAb1_1345	-	iron compound TonB-dependent receptor
1255	 53.21	0	1327166..1327321	-	51	62290246	-	BruAb1_1346	-	hypothetical protein
1256	 57.42	0	1327359..1328483	-	374	62290247	-	BruAb1_1347	-	ABC transporter permease
1257	 60.96	0	1331251..1332318	-	355	62290248	-	BruAb1_1349	-	HlyD family secretion protein
1258	 55.27	0	1332555..1332791	-	78	62290249	-	BruAb1_1350	-	hypothetical protein
1259	 54.48	0	1332864..1334159	-	431	62290250	-	BruAb1_1351	-	hypothetical protein
1260	 55.37	0	1334738..1334914	-	58	62290251	-	BruAb1_1352	-	hypothetical protein
1261	 57.10	0	1334974..1335276	+	100	62290252	ureA	BruAb1_1353	-	urease subunit gamma
1262	 58.13	0	1335325..1335804	+	159	62290253	ureB	BruAb1_1354	-	urease subunit beta
1263	 59.23	0	1335844..1337565	+	573	62290254	ureC	BruAb1_1355	-	urease subunit alpha
1264	 58.55	0	1337613..1338191	+	192	62290255	-	BruAb1_1356	-	urease accessory protein UreE
1265	 58.88	0	1338188..1338919	+	243	62290256	-	BruAb1_1357	-	urease accessory protein UreF
1266	 56.34	0	1338935..1339573	+	212	62290257	ureG-2	BruAb1_1358	-	UreG-2, urease accessory protein UreG
1267	 57.92	0	1339573..1340487	+	304	62290258	ureD-2	BruAb1_1359	-	UreD-2, urease accessory protein
1268	 60.19	0	1340497..1341546	+	349	62290259	-	BruAb1_1360	-	urea transporter
1269	 57.44	0	1341573..1342331	+	252	62290260	-	BruAb1_1361	-	lipoprotein
1270	 61.64	+1	1342351..1342986	+	211	62290261	cbiM	BruAb1_1362	-	cobalt transport protein CbiM
1271	 62.52	+1	1342983..1343609	+	208	62290262	-	BruAb1_1363	-	hypothetical protein
1272	 60.13	0	1343606..1344370	+	254	62290263	-	BruAb1_1364	-	cobalt ABC transporter, permease protein
1273	 57.22	0	1344367..1345086	+	239	62290264	-	BruAb1_1365	-	cobalt ABC transporter, ATP-binding protein
1274	 57.81	0	1345107..1345919	-	270	62290265	-	BruAb1_1366	-	CrcB family protein
1275	 56.41	0	1345932..1346321	-	129	62290266	ccrB	BruAb1_1367	-	camphor resistance protein CrcB
1276	 56.24	0	1346590..1347615	+	341	62290267	-	BruAb1_1368	-	hypothetical protein
1277	 51.95	-1	1347748..1348182	-	144	62290268	-	BruAb1_1369	-	hypothetical protein
1278	 57.82	0	1348334..1349260	-	308	62290269	-	BruAb1_1370	-	PhzF family phenazine biosynthesis protein
1279	 59.02	0	1349365..1350096	-	243	62290270	-	BruAb1_1371	-	hypothetical protein
1280	 55.68	0	1350116..1351225	-	369	62290271	-	BruAb1_1372	-	hypothetical protein
1281	 55.04	0	1351302..1351817	+	171	62290272	-	BruAb1_1373	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.