IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1154	 57.28	0	1218536..1218844	-	102	62290145	rpsJ	BruAb1_1239	-	30S ribosomal protein S10
1155	 58.84	0	1218905..1220080	-	391	62290146	tuf	BruAb1_1240	-	elongation factor Tu
1156	 57.03	0	1220144..1222228	-	694	62290147	fusA	BruAb1_1241	-	elongation factor G
1157	 57.32	0	1222259..1222729	-	156	62290148	rpsG	BruAb1_1242	-	30S ribosomal protein S7
1158	 57.26	0	1222796..1223167	-	123	62290149	rpsL	BruAb1_1243	-	30S ribosomal protein S12
1159	 52.59	-1	1223257..1223391	-	44	62290150	-	BruAb1_1244	-	hypothetical protein
1160	 60.00	0	1223398..1223502	-	34	62290151	-	BruAb1_1245	-	hypothetical protein
1161	 52.15	-1	1223599..1223970	+	123	62290152	-	BruAb1_1246	-	hypothetical protein
1162	 57.93	0	1224077..1228279	-	1400	62290153	rpoC	BruAb1_1247	-	DNA-directed RNA polymerase subunit beta'
1163	 57.72	0	1228428..1232561	-	1377	62290154	rpoB	BruAb1_1248	-	DNA-directed RNA polymerase subunit beta
1164	 59.20	0	1232769..1233143	-	124	62290155	rplL	BruAb1_1249	-	50S ribosomal protein L7/L12
1165	 58.38	0	1233195..1233713	-	172	62290156	rplJ	BruAb1_1250	-	50S ribosomal protein L10
1166	 56.98	0	1234104..1234805	-	233	62290157	rplA	BruAb1_1251	-	50S ribosomal protein L1
1167	 58.04	0	1234810..1235238	-	142	62290158	rplK	BruAb1_1252	-	50S ribosomal protein L11
1168	 52.27	-1	1235441..1235968	-	175	62290159	nusG	BruAb1_1253	-	transcription antitermination protein NusG
1169	 53.33	0	1235992..1236231	-	79	62290160	secE	BruAb1_1254	-	preprotein translocase subunit SecE
1170	 58.93	0	1236866..1238041	-	391	62290161	tuf	BruAb1_1255	-	elongation factor Tu
1171	 54.70	0	1238424..1238540	-	38	62290162	-	BruAb1_1256	-	hypothetical protein
1172	 61.09	0	1238672..1239532	+	286	62290163	-	BruAb1_1257	-	RNA methyltransferase
1173	 54.63	0	1239593..1240024	-	143	62290164	-	BruAb1_1258	-	CBS domain-containing protein
1174	 57.22	0	1240195..1240956	-	253	62290165	-	BruAb1_1259	-	rhomboid family protein
1175	 51.04	-1	1241017..1241112	+	31	62290166	-	BruAb1_1260	-	hypothetical protein
1176	 58.37	0	1241294..1241956	+	220	62290167	-	BruAb1_1261	-	hypothetical protein
1177	 59.41	0	1242200..1242805	+	201	62290168	-	BruAb1_1262	-	hypothetical protein
1178	 57.58	0	1242884..1243411	-	175	62290169	-	BruAb1_1263	-	ferripyochelin-binding protein
1179	 48.63	-2	1243682..1243936	-	84	62290170	-	BruAb1_1264	-	hypothetical protein
1180	 57.76	0	1244184..1245014	-	276	62290171	cysE	BruAb1_1265	-	CysE, serine acetyltransferase
1181	 58.24	0	1245183..1245953	-	256	62290172	-	BruAb1_1266	-	alpha/beta fold family hydrolase
1182	 54.37	0	1245987..1246466	-	159	62290173	-	BruAb1_1267	-	hypothetical protein
1183	 59.79	0	1246840..1247421	-	193	62290174	-	BruAb1_1268	-	cold-shock family protein
1184	 44.44	-2	1247545..1247715	-	56	62290175	-	BruAb1_1269	-	hypothetical protein
1185	 58.50	0	1247784..1248224	+	146	62290176	gloA	BruAb1_1270	-	GloA, lactoylglutathione lyase
1186	 61.57	+1	1249464..1251248	-	594	62290177	recJ	BruAb1_1272	-	RecJ, single-stranded-DNA-specific exonuclease RecJ
1187	 53.58	0	1251298..1252359	-	353	62290178	ddlA	BruAb1_1273	-	DdlA, D-alanine--D-alanine ligase A
1188	 61.09	0	1252662..1253648	-	328	62290179	glpX	BruAb1_1274	-	fructose 1,6-bisphosphatase II
1189	 58.86	0	1254041..1255360	-	439	62290180	hom	BruAb1_1275	-	homoserine dehydrogenase
1190	 58.56	0	1255496..1256716	-	406	62290181	-	BruAb1_1276	-	aminotransferase
1191	 59.95	0	1256847..1257278	-	143	62290182	-	BruAb1_1277	-	hypothetical protein
1192	 57.61	0	1257683..1258963	+	426	62290183	-	BruAb1_1278	-	hypothetical protein
1193	 55.79	0	1259573..1259857	+	94	62290184	-	BruAb1_1279	-	hypothetical protein
1194	 54.39	0	1259991..1260104	+	37	62290185	-	BruAb1_1280	-	hypothetical protein
1195	 44.09	-2	1260079..1260171	+	30	62290186	-	BruAb1_1281	-	hypothetical protein
1196	 58.02	0	1260180..1260896	+	238	62290187	sfsA	BruAb1_1282	-	sugar fermentation stimulation protein A
1197	 57.37	0	1260896..1261723	+	275	62290188	map	BruAb1_1283	-	methionine aminopeptidase
1198	 60.40	0	1261779..1262528	+	249	62290189	radC	BruAb1_1284	-	DNA repair protein RadC
1199	 58.22	0	1262730..1263368	+	212	62290190	-	BruAb1_1285	-	hypothetical protein
1200	 61.28	0	1263657..1264862	-	401	62290191	cobL	BruAb1_1286	-	CobL, precorrin-6Y C5,15-methyltransferase
1201	 59.01	0	1264939..1266231	+	430	62290192	-	BruAb1_1287	-	nitrite reductase family protein
1202	 62.04	+1	1266241..1266867	+	208	62290193	cobH	BruAb1_1288	-	precorrin-8X methylmutase
1203	 58.64	0	1266867..1267601	+	244	62290194	cobI	BruAb1_1289	-	precorrin-2 C(20)-methyltransferase
1204	 60.65	0	1267598..1269292	+	564	62290195	-	BruAb1_1290	-	CbiG, precorrin-3B C17-methyltransferase
1205	 61.97	+1	1269348..1269815	-	155	62290196	-	BruAb1_1291	-	hypothetical protein
1206	 59.98	0	1271502..1272593	+	363	62290197	-	BruAb1_1294	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
1207	 59.24	0	1272579..1273574	-	331	62290198	cobD	BruAb1_1295	-	cobalamin biosynthesis protein
1208	 60.66	0	1273599..1274597	-	332	62290199	cobC	BruAb1_1296	-	CobC, cobC protein
1209	 60.49	0	1274594..1275904	-	436	62290200	cobB	BruAb1_1297	-	cobyrinic acid a,c-diamide synthase
1210	 62.07	+1	1275901..1276749	-	282	62290201	cobA	BruAb1_1298	-	CobA, uroporphyrin-III C-methyltransferase
1211	 60.07	0	1276840..1277946	+	368	62290202	cbiD	BruAb1_1299	-	cobalt-precorrin-6A synthase
1212	 61.31	0	1277933..1278679	+	248	62290203	cobK	BruAb1_1300	-	cobalt-precorrin-6x reductase
1213	 58.23	0	1278668..1279426	-	252	62290204	cobM	BruAb1_1301	-	CobM, precorrin-4 C11-methyltransferase
1214	 58.59	0	1279486..1279881	-	131	62290205	-	BruAb1_1302	-	precorrin-3B C17-methyltransferase
1215	 54.81	0	1279874..1280320	-	148	62290206	-	BruAb1_1303	-	hypothetical protein
1216	 59.41	0	1280480..1281265	+	261	62290207	-	BruAb1_1304	-	hypothetical protein
1217	 59.59	0	1281262..1281600	-	112	62290208	-	BruAb1_1305	-	hypothetical protein
1218	 56.03	0	1281600..1282238	-	212	62290209	cobO	BruAb1_1306	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1219	 62.37	+1	1282231..1286022	-	1263	62290210	cobN	BruAb1_1307	-	cobaltochelatase
1220	 57.43	0	1286022..1287071	-	349	62290211	-	BruAb1_1308	-	cobalamin biosynthesis protein CobW
1221	 60.15	0	1287075..1287596	-	173	62290212	cobU	BruAb1_1309	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
1222	 61.74	+1	1287602..1288291	-	229	62290213	-	BruAb1_1310	-	hypothetical protein
1223	 57.14	0	1288408..1288596	-	62	62290214	-	BruAb1_1311	-	hypothetical protein
1224	 60.67	0	1288910..1290361	-	483	62290215	cobQ	BruAb1_1312	-	cobyric acid synthase
1225	 53.33	0	1290372..1290521	-	49	62290216	-	BruAb1_1313	-	hypothetical protein
1226	 57.69	0	1290637..1291794	+	385	62290217	-	BruAb1_1314	-	acyl-CoA dehydrogenase
1227	 60.61	0	1291826..1292716	+	296	62290218	mmsB	BruAb1_1315	-	MmsB, 3-hydroxyisobutyrate dehydrogenase
1228	 45.83	-2	1292952..1293119	-	55	62290219	-	BruAb1_1316	-	hypothetical protein
1229	 53.25	0	1293112..1293357	-	81	62290220	-	BruAb1_1317	-	hypothetical protein
1230	 59.07	0	1293426..1294346	-	306	62290221	-	BruAb1_1318	-	LysR family transcriptional regulator
1231	 57.56	0	1294792..1295790	+	332	62290222	-	BruAb1_1319	-	AraC family transcriptional regulator
1232	 54.98	0	1298703..1298993	-	96	62290223	-	BruAb1_1321	-	hypothetical protein
1233	 57.35	0	1299100..1301676	-	858	62290224	-	BruAb1_1322	-	membrane protein
1234	 56.41	0	1301806..1302390	-	194	62290225	-	BruAb1_1323	-	hypothetical protein
1235	 59.34	0	1302442..1304979	+	845	62290226	-	BruAb1_1324	-	bifunctional preprotein translocase subunit SecD/SecF
1236	 59.46	0	1305057..1306916	+	619	62290227	-	BruAb1_1325	-	potassium efflux system family protein
1237	 55.35	0	1306916..1307887	+	323	62290228	-	BruAb1_1326	-	hypothetical protein
1238	 56.32	0	1308765..1309595	-	276	62290229	cysW-2	BruAb1_1328	-	CysW-2, sulfate ABC transporter, permease protein
1239	 58.82	0	1309582..1310448	-	288	62290230	-	BruAb1_1329	-	permease
1240	 55.52	0	1310575..1311579	-	334	62290231	-	BruAb1_1330	-	sulfate ABC transporter sulfate-binding protein
1241	 52.69	-1	1311845..1312030	-	61	62290232	-	BruAb1_1331	-	hypothetical protein
1242	 58.95	0	1312210..1313778	-	522	62290233	-	BruAb1_1332	-	CBS domain-containing protein
1243	 59.58	0	1314196..1314858	-	220	62290234	-	BruAb1_1333	-	dedA family protein
1244	 53.33	0	1315741..1316295	+	184	62290235	-	BruAb1_1334	-	acid-shock protein
1245	 54.37	0	1316429..1316851	-	140	62290236	fucU	BruAb1_1335	-	FucU, fucose operon fucU protein
1246	 59.26	0	1316945..1317754	-	269	62290237	-	BruAb1_1336	-	short chain dehydrogenase
1247	 58.46	0	1317769..1318548	-	259	62290238	-	BruAb1_1337	-	sugar ABC transporter, ATP-binding protein
1248	 59.14	0	1319721..1319813	-	30	62290239	-	BruAb1_1339	-	hypothetical protein
1249	 59.68	0	1319975..1320904	-	309	62290240	-	BruAb1_1340	-	sugar ABC transporter, periplasmic sugar-binding protein
1250	 57.44	0	1321283..1322398	+	371	62290241	-	BruAb1_1341	-	oxidoreductase
1251	 62.16	+1	1322395..1323171	-	258	62290242	-	BruAb1_1342	-	iron compound ABC transporter, ATP-binding protein
1252	 62.08	+1	1323168..1324169	-	333	62290243	-	BruAb1_1343	-	iron compound ABC transporter, permease protein
1253	 60.48	0	1324162..1325001	-	279	62290244	-	BruAb1_1344	-	iron compound ABC transporter, periplasmic iron compound-binding protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.