IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1080	 59.74	0	1155489..1156253	-	254	62290071	uppS	BruAb1_1164	-	UppS, undecaprenyl diphosphate synthase
1081	 57.93	0	1156298..1156858	-	186	62290072	frr	BruAb1_1165	-	ribosome recycling factor
1082	 58.37	0	1156894..1157616	-	240	62290073	pyrH	BruAb1_1166	-	uridylate kinase
1083	 59.48	0	1157783..1158700	-	305	62290074	tsf	BruAb1_1167	-	elongation factor Ts
1084	 59.27	0	1158890..1159660	-	256	62290075	rpsB	BruAb1_1168	-	30S ribosomal protein S2
1085	 52.72	-1	1159954..1160376	-	140	62290076	-	BruAb1_1169	-	hypothetical protein
1086	 53.86	0	1160488..1161330	-	280	62290077	-	BruAb1_1170	-	hypothetical protein
1087	 58.06	0	1161474..1161938	+	154	62290078	-	BruAb1_1171	-	hypothetical protein
1088	 57.35	0	1161940..1162680	+	246	62290079	-	BruAb1_1172	-	glycerophosphoryl diester phosphodiesterase family protein
1089	 54.88	0	1162735..1163922	+	395	62290080	-	BruAb1_1173	-	hypothetical protein
1090	 53.43	0	1163994..1164416	+	140	62290081	-	BruAb1_1174	-	HIT family protein
1091	 57.62	0	1164523..1166997	-	824	62290082	clpA	BruAb1_1175	-	ClpA, ATP-dependent Clp protease, ATP-binding subunit ClpA
1092	 51.58	-1	1167004..1167414	-	136	62290083	clpS	BruAb1_1176	-	ATP-dependent Clp protease adaptor protein ClpS
1093	 56.25	0	1167415..1167606	+	63	62290084	-	BruAb1_1177	-	hypothetical protein
1094	 61.31	0	1167840..1169258	+	472	62290085	-	BruAb1_1178	-	D-alanyl-D-alanine carboxypeptidase
1095	 59.06	0	1169290..1169631	+	113	62290086	-	BruAb1_1179	-	hypothetical protein
1096	 58.68	0	1169745..1170182	-	145	62290087	-	BruAb1_1180	-	hypothetical protein
1097	 50.79	-1	1171873..1171998	-	41	62290088	-	BruAb1_1182	-	hypothetical protein
1098	 56.01	0	1172197..1173003	-	268	62290089	-	BruAb1_1183	-	hypothetical protein
1099	 58.02	0	1173166..1174137	+	323	62290090	-	BruAb1_1184	-	hypothetical protein
1100	 56.07	0	1174148..1174534	-	128	62290091	-	BruAb1_1185	-	transcriptional regulator
1101	 54.64	0	1174772..1175137	+	121	62290092	-	BruAb1_1186	-	hypothetical protein
1102	 59.48	0	1175152..1175499	+	115	62290093	-	BruAb1_1187	-	hypothetical protein
1103	 55.56	0	1175570..1175884	+	104	62290094	-	BruAb1_1188	-	hypothetical protein
1104	 57.69	0	1176329..1176796	+	155	62290095	-	BruAb1_1189	-	7-cyano-7-deazaguanine reductase
1105	 59.32	0	1176927..1177103	+	58	62290096	-	BruAb1_1190	-	hypothetical protein
1106	 54.33	0	1177135..1177677	+	180	62290097	-	BruAb1_1191	-	hypothetical protein
1107	 58.17	0	1177680..1179092	-	470	62290098	-	BruAb1_1192	-	Cro/CI family transcriptional regulator
1108	 58.71	0	1179243..1180775	+	510	62290099	-	BruAb1_1193	-	propionlyl-CoA carboxylase
1109	 59.63	0	1180860..1182863	+	667	62290100	pccA	BruAb1_1194	-	PccA, propionyl-CoA carboxylase, alpha subunit
1110	 58.91	0	1182924..1185062	+	712	62290101	bhbA	BruAb1_1195	-	methylmalonyl-CoA mutase
1111	 56.94	0	1185169..1185600	-	143	62290102	-	BruAb1_1196	-	hypothetical protein
1112	 57.15	0	1185718..1187766	-	682	62290103	-	BruAb1_1197	-	hypothetical protein
1113	 51.63	-1	1187807..1187959	-	50	62290104	-	BruAb1_1198	-	hypothetical protein
1114	 57.88	0	1188003..1188992	-	329	62290105	-	BruAb1_1199	-	hypothetical protein
1115	 57.55	0	1189138..1189971	-	277	62290106	murI	BruAb1_1200	-	glutamate racemase
1116	 57.52	0	1189968..1190798	-	276	62290107	-	BruAb1_1201	-	RNA methyltransferase
1117	 58.29	0	1190978..1191562	+	194	62290108	-	BruAb1_1202	-	ThiJ/PfpI family protein
1118	 57.91	0	1191651..1192061	+	136	62290109	-	BruAb1_1203	-	hypothetical protein
1119	 57.20	0	1192189..1193403	+	404	62290110	-	BruAb1_1204	-	isocitrate dehydrogenase
1120	 58.09	0	1193625..1195070	+	481	62290111	phoA	BruAb1_1205	-	alkaline phosphatase
1121	 58.77	0	1195222..1197879	-	885	62290112	alaS	BruAb1_1206	-	alanyl-tRNA synthetase
1122	 57.00	0	1198272..1199357	-	361	62290113	recA	BruAb1_1207	-	recombinase A
1123	 49.21	-1	1199527..1199652	-	41	62290114	-	BruAb1_1208	-	hypothetical protein
1124	 59.13	0	1199688..1200350	-	220	62290115	-	BruAb1_1209	-	OmpA family protein
1125	 55.90	0	1200437..1201021	-	194	62290116	-	BruAb1_1210	-	lipoprotein
1126	 59.89	0	1201145..1202458	-	437	62290117	-	BruAb1_1211	-	recombination factor protein RarA
1127	 59.16	0	1202605..1204029	-	474	62290118	-	BruAb1_1212	-	serine protease
1128	 58.04	0	1204309..1204737	-	142	62290119	rplQ	BruAb1_1213	-	50S ribosomal protein L17
1129	 57.10	0	1204899..1205912	-	337	62290120	rpoA	BruAb1_1214	-	DNA-directed RNA polymerase subunit alpha
1130	 62.05	+1	1206028..1206417	-	129	62290121	rpsK	BruAb1_1215	-	30S ribosomal protein S11
1131	 56.91	0	1206545..1206913	-	122	62290122	rpsM	BruAb1_1216	-	30S ribosomal protein S13
1132	 58.80	0	1207222..1207806	-	194	62290123	adk	BruAb1_1217	-	adenylate kinase
1133	 55.11	0	1207803..1209143	-	446	62290124	secY	BruAb1_1218	-	preprotein translocase subunit SecY
1134	 59.45	0	1209304..1209774	-	156	62290125	rplO	BruAb1_1219	-	50S ribosomal protein L15
1135	 58.59	0	1209795..1209992	-	65	62290126	rpmD	BruAb1_1220	-	50S ribosomal protein L30
1136	 60.43	0	1210110..1210670	-	186	62290127	rpsE	BruAb1_1221	-	30S ribosomal protein S5
1137	 61.98	+1	1210712..1211074	-	120	62290128	rplR	BruAb1_1222	-	50S ribosomal protein L18
1138	 57.49	0	1211087..1211620	-	177	62290129	rplF	BruAb1_1223	-	50S ribosomal protein L6
1139	 57.89	0	1211659..1212057	-	132	62290130	rpsH	BruAb1_1224	-	30S ribosomal protein S8
1140	 57.84	0	1212068..1212373	-	101	62290131	rpsN	BruAb1_1225	-	30S ribosomal protein S14
1141	 54.66	0	1212401..1212958	-	185	62290132	rplE	BruAb1_1226	-	50S ribosomal protein L5
1142	 57.05	0	1212951..1213262	-	103	62290133	rplX	BruAb1_1227	-	50S ribosomal protein L24
1143	 54.74	0	1213275..1213643	-	122	62290134	rplN	BruAb1_1228	-	50S ribosomal protein L14
1144	 53.50	0	1213712..1213954	-	80	62290135	rpsQ	BruAb1_1229	-	30S ribosomal protein S17
1145	 58.21	0	1213967..1214167	-	66	62290136	rpmC	BruAb1_1230	-	50S ribosomal protein L29
1146	 58.21	0	1214180..1214593	-	137	62290137	rplP	BruAb1_1231	-	50S ribosomal protein L16
1147	 57.38	0	1214632..1215342	-	236	62290138	rpsC	BruAb1_1232	-	30S ribosomal protein S3
1148	 58.72	0	1215342..1215731	-	129	62290139	rplV	BruAb1_1233	-	50S ribosomal protein L22
1149	 54.48	0	1215734..1216012	-	92	62290140	rpsS	BruAb1_1234	-	30S ribosomal protein S19
1150	 59.83	0	1216028..1216861	-	277	62290141	rplB	BruAb1_1235	-	50S ribosomal protein L2
1151	 57.14	0	1216883..1217176	-	97	62290142	rplW	BruAb1_1236	-	50S ribosomal protein L23
1152	 60.55	0	1217173..1217793	-	206	62290143	rplD	BruAb1_1237	-	50S ribosomal protein L4
1153	 58.54	0	1217793..1218506	-	237	62290144	rplC	BruAb1_1238	-	50S ribosomal protein L3
1154	 57.28	0	1218536..1218844	-	102	62290145	rpsJ	BruAb1_1239	-	30S ribosomal protein S10
1155	 58.84	0	1218905..1220080	-	391	62290146	tuf	BruAb1_1240	-	elongation factor Tu
1156	 57.03	0	1220144..1222228	-	694	62290147	fusA	BruAb1_1241	-	elongation factor G
1157	 57.32	0	1222259..1222729	-	156	62290148	rpsG	BruAb1_1242	-	30S ribosomal protein S7
1158	 57.26	0	1222796..1223167	-	123	62290149	rpsL	BruAb1_1243	-	30S ribosomal protein S12
1159	 52.59	-1	1223257..1223391	-	44	62290150	-	BruAb1_1244	-	hypothetical protein
1160	 60.00	0	1223398..1223502	-	34	62290151	-	BruAb1_1245	-	hypothetical protein
1161	 52.15	-1	1223599..1223970	+	123	62290152	-	BruAb1_1246	-	hypothetical protein
1162	 57.93	0	1224077..1228279	-	1400	62290153	rpoC	BruAb1_1247	-	DNA-directed RNA polymerase subunit beta'
1163	 57.72	0	1228428..1232561	-	1377	62290154	rpoB	BruAb1_1248	-	DNA-directed RNA polymerase subunit beta
1164	 59.20	0	1232769..1233143	-	124	62290155	rplL	BruAb1_1249	-	50S ribosomal protein L7/L12
1165	 58.38	0	1233195..1233713	-	172	62290156	rplJ	BruAb1_1250	-	50S ribosomal protein L10
1166	 56.98	0	1234104..1234805	-	233	62290157	rplA	BruAb1_1251	-	50S ribosomal protein L1
1167	 58.04	0	1234810..1235238	-	142	62290158	rplK	BruAb1_1252	-	50S ribosomal protein L11
1168	 52.27	-1	1235441..1235968	-	175	62290159	nusG	BruAb1_1253	-	transcription antitermination protein NusG
1169	 53.33	0	1235992..1236231	-	79	62290160	secE	BruAb1_1254	-	preprotein translocase subunit SecE
1170	 58.93	0	1236866..1238041	-	391	62290161	tuf	BruAb1_1255	-	elongation factor Tu
1171	 54.70	0	1238424..1238540	-	38	62290162	-	BruAb1_1256	-	hypothetical protein
1172	 61.09	0	1238672..1239532	+	286	62290163	-	BruAb1_1257	-	RNA methyltransferase
1173	 54.63	0	1239593..1240024	-	143	62290164	-	BruAb1_1258	-	CBS domain-containing protein
1174	 57.22	0	1240195..1240956	-	253	62290165	-	BruAb1_1259	-	rhomboid family protein
1175	 51.04	-1	1241017..1241112	+	31	62290166	-	BruAb1_1260	-	hypothetical protein
1176	 58.37	0	1241294..1241956	+	220	62290167	-	BruAb1_1261	-	hypothetical protein
1177	 59.41	0	1242200..1242805	+	201	62290168	-	BruAb1_1262	-	hypothetical protein
1178	 57.58	0	1242884..1243411	-	175	62290169	-	BruAb1_1263	-	ferripyochelin-binding protein
1179	 48.63	-2	1243682..1243936	-	84	62290170	-	BruAb1_1264	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.