IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1031	 55.00	0	1101228..1101347	+	39	62290022	-	BruAb1_1113	-	hypothetical protein
1032	 56.31	0	1101339..1102613	-	424	62290023	clpX	BruAb1_1114	-	ATP-dependent protease ATP-binding subunit
1033	 56.51	0	1102995..1103624	-	209	62290024	clpP	BruAb1_1115	-	ATP-dependent Clp protease proteolytic subunit
1034	 59.55	0	1103729..1105147	-	472	62290025	-	BruAb1_1116	-	GTP-binding protein
1035	 45.57	-2	1105338..1105574	-	78	62290026	hfq	BruAb1_1117	-	RNA-binding protein Hfq
1036	 48.33	-2	1105580..1105819	-	79	62290027	-	BruAb1_1118	-	hypothetical protein
1037	 56.28	0	1106682..1108058	-	458	62290028	trkA	BruAb1_1120	-	potassium transporter peripheral membrane component
1038	 60.21	0	1108083..1109444	-	453	62290029	ntrX	BruAb1_1121	-	NtrX, nitrogen regulation protein NtrX
1039	 57.12	0	1109446..1111770	-	774	62290030	ntrY	BruAb1_1122	-	NtrY, nitrogen regulation protein NtrY
1040	 59.42	0	1111861..1113336	-	491	62290031	ntrC	BruAb1_1123	-	NtrC, nitrogen regulation protein NtrC
1041	 59.67	0	1113333..1114475	-	380	62290032	ntrB	BruAb1_1124	-	NtrB, nitrogen regulation protein NtrB
1042	 58.68	0	1114475..1115476	-	333	62290033	nifR3	BruAb1_1125	-	NifR3, nitrogen regulation protein Nifr3
1043	 59.02	0	1115614..1116843	+	409	161611212	ispDF	BruAb1_1126	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1044	 59.24	0	1116840..1117337	+	165	62290035	cinA	BruAb1_1127	-	CinA, competence/damage-inducible protein CinA
1045	 53.16	0	1118214..1118672	-	152	62290036	-	BruAb1_1129	-	hypothetical protein
1046	 56.45	0	1118678..1119646	-	322	62290037	lipA	BruAb1_1130	-	lipoyl synthase
1047	 64.81	+1	1119756..1119917	-	53	62290038	-	BruAb1_1131	-	hypothetical protein
1048	 58.95	0	1120036..1121499	-	487	62290039	lpdA-1	BruAb1_1132	-	dihydrolipoamide dehydrogenase
1049	 59.67	0	1121582..1122925	-	447	62290040	aceF	BruAb1_1133	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1050	 57.50	0	1122943..1124328	-	461	62290041	pdhB	BruAb1_1134	-	pyruvate dehydrogenase subunit beta
1051	 55.91	0	1124347..1125387	-	346	62290042	pdhA	BruAb1_1135	-	PdhA, pyruvate dehydrogenase complex, E1 component, alpha subunit
1052	 49.70	-1	1125526..1125855	-	109	62290043	-	BruAb1_1136	-	hypothetical protein
1053	 49.66	-1	1126127..1126708	-	193	62290044	-	BruAb1_1137	-	hypothetical protein
1054	 57.51	0	1127045..1128322	-	425	62290045	eno	BruAb1_1138	-	enolase
1055	 57.07	0	1128509..1129342	-	277	62290046	kdsA	BruAb1_1139	-	2-dehydro-3-deoxyphosphooctonate aldolase
1056	 55.62	0	1129448..1131076	-	542	62290047	pyrG	BruAb1_1140	-	CTP synthetase
1057	 47.15	-2	1131089..1131211	-	40	62290048	-	BruAb1_1141	-	hypothetical protein
1058	 57.29	0	1131346..1132038	-	230	62290049	-	BruAb1_1142	-	hypothetical protein
1059	 63.53	+1	1132292..1132738	-	148	62290050	secG	BruAb1_1143	-	preprotein translocase subunit SecG
1060	 59.61	0	1132838..1133602	-	254	62290051	tpiA	BruAb1_1144	-	triosephosphate isomerase
1061	 59.25	0	1133821..1135707	+	628	62290052	-	BruAb1_1145	-	rotamase family protein
1062	 61.76	+1	1135722..1136741	+	339	62290053	trpD	BruAb1_1146	-	anthranilate phosphoribosyltransferase
1063	 58.24	0	1136758..1137564	+	268	62290054	trpC	BruAb1_1147	-	indole-3-glycerol-phosphate synthase
1064	 60.44	0	1137561..1138058	+	165	62290055	moaC	BruAb1_1148	-	molybdenum cofactor biosynthesis protein C
1065	 60.82	0	1138154..1139368	+	404	62290056	moeA	BruAb1_1149	-	MoeA, molybdopterin biosynthesis protein MoeA
1066	 57.68	0	1139616..1140338	+	240	62290057	lexA	BruAb1_1150	-	LexA repressor
1067	 57.39	0	1140332..1142863	-	843	62290058	-	BruAb1_1151	-	ComEC/Rec2 family protein
1068	 53.67	0	1142895..1143071	-	58	62290059	-	BruAb1_1152	-	hypothetical protein
1069	 60.06	0	1143084..1144505	+	473	62290060	gltX	BruAb1_1153	-	glutamyl-tRNA synthetase
1070	 57.15	0	1144734..1146026	+	430	62290061	gltA	BruAb1_1154	-	type II citrate synthase
1071	 57.83	0	1146199..1147386	-	395	62290062	lpxB	BruAb1_1155	-	lipid-A-disaccharide synthase
1072	 58.36	0	1147383..1148285	-	300	62290063	-	BruAb1_1156	-	hypothetical protein
1073	 57.47	0	1148266..1149102	-	278	62290064	lpxA	BruAb1_1157	-	UDP-N-acetylglucosamine acyltransferase
1074	 53.80	0	1149111..1149584	-	157	62290065	fabZ	BruAb1_1158	-	(3R)-hydroxymyristoyl-ACP dehydratase
1075	 58.43	0	1149577..1150632	-	351	62290066	lpxD	BruAb1_1159	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1076	 54.43	0	1150686..1153031	-	781	62290067	-	BruAb1_1160	-	surface antigen
1077	 45.83	-2	1153015..1153134	-	39	62290068	-	BruAb1_1161	-	hypothetical protein
1078	 57.11	0	1153367..1154506	-	379	62290069	-	BruAb1_1162	-	membrane-associated zinc metalloprotease
1079	 58.67	0	1154573..1155385	-	270	62290070	cdsA	BruAb1_1163	-	CdsA, phosphatidate cytidylyltransferase
1080	 59.74	0	1155489..1156253	-	254	62290071	uppS	BruAb1_1164	-	UppS, undecaprenyl diphosphate synthase
1081	 57.93	0	1156298..1156858	-	186	62290072	frr	BruAb1_1165	-	ribosome recycling factor
1082	 58.37	0	1156894..1157616	-	240	62290073	pyrH	BruAb1_1166	-	uridylate kinase
1083	 59.48	0	1157783..1158700	-	305	62290074	tsf	BruAb1_1167	-	elongation factor Ts
1084	 59.27	0	1158890..1159660	-	256	62290075	rpsB	BruAb1_1168	-	30S ribosomal protein S2
1085	 52.72	-1	1159954..1160376	-	140	62290076	-	BruAb1_1169	-	hypothetical protein
1086	 53.86	0	1160488..1161330	-	280	62290077	-	BruAb1_1170	-	hypothetical protein
1087	 58.06	0	1161474..1161938	+	154	62290078	-	BruAb1_1171	-	hypothetical protein
1088	 57.35	0	1161940..1162680	+	246	62290079	-	BruAb1_1172	-	glycerophosphoryl diester phosphodiesterase family protein
1089	 54.88	0	1162735..1163922	+	395	62290080	-	BruAb1_1173	-	hypothetical protein
1090	 53.43	0	1163994..1164416	+	140	62290081	-	BruAb1_1174	-	HIT family protein
1091	 57.62	0	1164523..1166997	-	824	62290082	clpA	BruAb1_1175	-	ClpA, ATP-dependent Clp protease, ATP-binding subunit ClpA
1092	 51.58	-1	1167004..1167414	-	136	62290083	clpS	BruAb1_1176	-	ATP-dependent Clp protease adaptor protein ClpS
1093	 56.25	0	1167415..1167606	+	63	62290084	-	BruAb1_1177	-	hypothetical protein
1094	 61.31	0	1167840..1169258	+	472	62290085	-	BruAb1_1178	-	D-alanyl-D-alanine carboxypeptidase
1095	 59.06	0	1169290..1169631	+	113	62290086	-	BruAb1_1179	-	hypothetical protein
1096	 58.68	0	1169745..1170182	-	145	62290087	-	BruAb1_1180	-	hypothetical protein
1097	 50.79	-1	1171873..1171998	-	41	62290088	-	BruAb1_1182	-	hypothetical protein
1098	 56.01	0	1172197..1173003	-	268	62290089	-	BruAb1_1183	-	hypothetical protein
1099	 58.02	0	1173166..1174137	+	323	62290090	-	BruAb1_1184	-	hypothetical protein
1100	 56.07	0	1174148..1174534	-	128	62290091	-	BruAb1_1185	-	transcriptional regulator
1101	 54.64	0	1174772..1175137	+	121	62290092	-	BruAb1_1186	-	hypothetical protein
1102	 59.48	0	1175152..1175499	+	115	62290093	-	BruAb1_1187	-	hypothetical protein
1103	 55.56	0	1175570..1175884	+	104	62290094	-	BruAb1_1188	-	hypothetical protein
1104	 57.69	0	1176329..1176796	+	155	62290095	-	BruAb1_1189	-	7-cyano-7-deazaguanine reductase
1105	 59.32	0	1176927..1177103	+	58	62290096	-	BruAb1_1190	-	hypothetical protein
1106	 54.33	0	1177135..1177677	+	180	62290097	-	BruAb1_1191	-	hypothetical protein
1107	 58.17	0	1177680..1179092	-	470	62290098	-	BruAb1_1192	-	Cro/CI family transcriptional regulator
1108	 58.71	0	1179243..1180775	+	510	62290099	-	BruAb1_1193	-	propionlyl-CoA carboxylase
1109	 59.63	0	1180860..1182863	+	667	62290100	pccA	BruAb1_1194	-	PccA, propionyl-CoA carboxylase, alpha subunit
1110	 58.91	0	1182924..1185062	+	712	62290101	bhbA	BruAb1_1195	-	methylmalonyl-CoA mutase
1111	 56.94	0	1185169..1185600	-	143	62290102	-	BruAb1_1196	-	hypothetical protein
1112	 57.15	0	1185718..1187766	-	682	62290103	-	BruAb1_1197	-	hypothetical protein
1113	 51.63	-1	1187807..1187959	-	50	62290104	-	BruAb1_1198	-	hypothetical protein
1114	 57.88	0	1188003..1188992	-	329	62290105	-	BruAb1_1199	-	hypothetical protein
1115	 57.55	0	1189138..1189971	-	277	62290106	murI	BruAb1_1200	-	glutamate racemase
1116	 57.52	0	1189968..1190798	-	276	62290107	-	BruAb1_1201	-	RNA methyltransferase
1117	 58.29	0	1190978..1191562	+	194	62290108	-	BruAb1_1202	-	ThiJ/PfpI family protein
1118	 57.91	0	1191651..1192061	+	136	62290109	-	BruAb1_1203	-	hypothetical protein
1119	 57.20	0	1192189..1193403	+	404	62290110	-	BruAb1_1204	-	isocitrate dehydrogenase
1120	 58.09	0	1193625..1195070	+	481	62290111	phoA	BruAb1_1205	-	alkaline phosphatase
1121	 58.77	0	1195222..1197879	-	885	62290112	alaS	BruAb1_1206	-	alanyl-tRNA synthetase
1122	 57.00	0	1198272..1199357	-	361	62290113	recA	BruAb1_1207	-	recombinase A
1123	 49.21	-1	1199527..1199652	-	41	62290114	-	BruAb1_1208	-	hypothetical protein
1124	 59.13	0	1199688..1200350	-	220	62290115	-	BruAb1_1209	-	OmpA family protein
1125	 55.90	0	1200437..1201021	-	194	62290116	-	BruAb1_1210	-	lipoprotein
1126	 59.89	0	1201145..1202458	-	437	62290117	-	BruAb1_1211	-	recombination factor protein RarA
1127	 59.16	0	1202605..1204029	-	474	62290118	-	BruAb1_1212	-	serine protease
1128	 58.04	0	1204309..1204737	-	142	62290119	rplQ	BruAb1_1213	-	50S ribosomal protein L17
1129	 57.10	0	1204899..1205912	-	337	62290120	rpoA	BruAb1_1214	-	DNA-directed RNA polymerase subunit alpha
1130	 62.05	+1	1206028..1206417	-	129	62290121	rpsK	BruAb1_1215	-	30S ribosomal protein S11
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.