IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
963	 56.81	0	1016564..1017121	-	185	62289954	-	BruAb1_1037	-	hypothetical protein
964	 59.50	0	1017373..1018446	-	357	62289955	-	BruAb1_1038	-	hypothetical protein
965	 58.59	0	1018443..1019903	-	486	62289956	-	BruAb1_1039	-	hypothetical protein
966	 54.09	0	1019996..1020496	-	166	62289957	-	BruAb1_1040	-	hypothetical protein
967	 52.04	-1	1020892..1021308	+	138	62289958	dksA	BruAb1_1041	-	DksA, dnaK suppressor protein
968	 44.79	-2	1021318..1021413	+	31	62289959	-	BruAb1_1042	-	hypothetical protein
969	 60.30	0	1021454..1022710	-	418	62289960	-	BruAb1_1043	-	hypothetical protein
970	 58.53	0	1022936..1025773	+	945	62289961	-	BruAb1_1044	-	sensory box histidine kinase/response regulator
971	 57.57	0	1025798..1027006	+	402	62289962	-	BruAb1_1045	-	hypothetical protein
972	 55.56	0	1027037..1028359	+	440	62289963	-	BruAb1_1046	-	hypothetical protein
973	 51.18	-1	1028340..1029566	-	408	62289964	-	BruAb1_1047	-	hypothetical protein
974	 57.49	0	1029656..1033438	-	1260	62289965	-	BruAb1_1048	-	ribonucleotide-diphosphate reductase subunit alpha
975	 47.50	-2	1033491..1033730	+	79	62289966	-	BruAb1_1049	-	hypothetical protein
976	 59.51	0	1034140..1034628	-	162	62289967	-	BruAb1_1050	-	MutT/nudix family protein
977	 59.34	0	1035817..1036662	-	281	62289968	-	BruAb1_1052	-	hypothetical protein
978	 57.44	0	1036740..1037498	-	252	62289969	-	BruAb1_1053	-	cinA-related protein
979	 59.00	0	1037659..1038258	+	199	62289970	wrbA	BruAb1_1054	-	TrpR binding protein WrbA
980	 50.67	-1	1038236..1038385	-	49	62289971	-	BruAb1_1055	-	hypothetical protein
981	 53.89	0	1038560..1039819	+	419	62289972	-	BruAb1_1056	-	threonine dehydratase
982	 61.97	+1	1039886..1041481	+	531	62289973	-	BruAb1_1057	-	DEAD-box ATP dependent DNA helicase
983	 58.11	0	1041652..1042680	+	342	62289974	-	BruAb1_1058	-	cysteine synthase A
984	 55.91	0	1042683..1043426	+	247	62289975	-	BruAb1_1059	-	hypothetical protein
985	 58.25	0	1043453..1044307	+	284	62289976	-	BruAb1_1060	-	rhodanese family protein
986	 55.17	0	1044309..1044830	+	173	62289977	-	BruAb1_1061	-	acetyltransferase
987	 55.33	0	1045017..1046507	-	496	62289978	-	BruAb1_1062	-	acetyl-CoA hydrolase/transferase family protein
988	 55.96	0	1051656..1052486	-	276	62289979	-	BruAb1_1068	-	hypothetical protein
989	 55.28	0	1052595..1053560	-	321	62289980	-	BruAb1_1069	-	sodium/bile acid symporter family protein
990	 51.11	-1	1053588..1053722	-	44	62289981	-	BruAb1_1070	-	hypothetical protein
991	 53.97	0	1053689..1054696	-	335	62289982	galE-1	BruAb1_1071	-	GalE-1, UDP-glucose 4-epimerase
992	 53.45	0	1054841..1055665	+	274	62289983	mazG	BruAb1_1072	-	nucleoside triphosphate pyrophosphohydrolase
993	 56.37	0	1055674..1056285	-	203	62289984	-	BruAb1_1073	-	hypothetical protein
994	 58.12	0	1056328..1056912	-	194	62289985	-	BruAb1_1074	-	nitroreductase family protein
995	 58.11	0	1057150..1058142	+	330	62289986	-	BruAb1_1075	-	hypothetical protein
996	 56.45	0	1058197..1060173	-	658	62289987	thrS	BruAb1_1076	-	threonyl-tRNA synthetase
997	 58.23	0	1060388..1061620	-	410	62289988	-	BruAb1_1077	-	D-alanyl-D-alanine carboxypeptidase
998	 59.68	0	1061727..1062098	-	123	62289989	-	BruAb1_1078	-	hypothetical protein
999	 57.37	0	1062100..1062540	-	146	62289990	-	BruAb1_1079	-	NifU-related protein
1000	 57.01	0	1062804..1063445	+	213	62289991	folE	BruAb1_1080	-	GTP cyclohydrolase I
1001	 57.38	0	1063468..1063887	+	139	62289992	hisI	BruAb1_1081	-	phosphoribosyl-AMP cyclohydrolase
1002	 59.39	0	1064104..1065051	+	315	62289993	-	BruAb1_1082	-	hypothetical protein
1003	 53.82	0	1065524..1066768	+	414	62289994	-	BruAb1_1083	-	phage integrase family site specific recombinase
1004	 53.58	0	1066907..1067311	+	134	62289995	-	BruAb1_1084	-	hypothetical protein
1005	 37.00	-2	1067369..1067641	+	90	62289996	-	BruAb1_1085	-	hypothetical protein
1006	 58.25	0	1070656..1071273	-	205	62289997	-	BruAb1_1087	-	resolvase family site-specific recombinase
1007	 54.86	0	1071663..1072043	-	126	62289998	-	BruAb1_1088	-	hypothetical protein
1008	 54.68	0	1072400..1072933	-	177	62289999	-	BruAb1_1089	-	hypothetical BRO family protein
1009	 56.79	0	1074725..1075909	-	394	62290000	-	BruAb1_1091	-	glutaryl-CoA dehydrogenase
1010	 59.15	0	1076011..1076862	+	283	62290001	-	BruAb1_1092	-	LysR family transcriptional regulator
1011	 59.55	0	1076912..1077895	-	327	62290002	-	BruAb1_1093	-	luciferase family protein
1012	 57.38	0	1077976..1081065	-	1029	62290003	-	BruAb1_1094	-	AcrB/AcrD/AcrF multidrug efflux protein
1013	 57.44	0	1081075..1082223	-	382	62290004	-	BruAb1_1095	-	hypothetical protein
1014	 54.14	0	1082364..1082930	+	188	62290005	-	BruAb1_1096	-	TetR family transcriptional regulator
1015	 58.99	0	1082967..1084100	-	377	62290006	tgt	BruAb1_1097	-	queuine tRNA-ribosyltransferase
1016	 58.42	0	1084097..1085188	-	363	62290007	queA	BruAb1_1098	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1017	 59.57	0	1085310..1085816	-	168	62290008	-	BruAb1_1099	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1018	 55.84	0	1085879..1086469	-	196	62290009	-	BruAb1_1100	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1019	 55.76	0	1086490..1086984	-	164	62290010	coaD	BruAb1_1101	-	phosphopantetheine adenylyltransferase
1020	 55.00	0	1087200..1087439	-	79	62290011	-	BruAb1_1102	-	hypothetical protein
1021	 58.94	0	1087495..1090263	-	922	62290012	gyrA	BruAb1_1103	-	DNA gyrase subunit A
1022	 56.67	0	1090551..1091180	+	209	62290013	-	BruAb1_1104	-	hypothetical protein
1023	 55.79	0	1091271..1091849	-	192	62290014	-	BruAb1_1105	-	guanylate kinase
1024	 54.99	0	1092036..1092797	+	253	62290015	-	BruAb1_1106	-	GntR family transcriptional regulator
1025	 44.28	-2	1092940..1093341	+	133	62290016	-	BruAb1_1107	-	hypothetical protein
1026	 56.41	0	1093497..1094003	-	168	62290017	-	BruAb1_1108	-	single-stranded DNA-binding protein family
1027	 54.23	0	1094571..1094771	+	66	62290018	-	BruAb1_1109	-	hypothetical protein
1028	 58.36	0	1094902..1097826	+	974	62290019	uvrA	BruAb1_1110	-	excinuclease ABC subunit A
1029	 60.51	0	1098013..1098288	-	91	62290020	-	BruAb1_1111	-	DNA-binding protein HU
1030	 56.79	0	1098469..1100907	-	812	62290021	lon	BruAb1_1112	-	Lon, ATP-dependent protease La
1031	 55.00	0	1101228..1101347	+	39	62290022	-	BruAb1_1113	-	hypothetical protein
1032	 56.31	0	1101339..1102613	-	424	62290023	clpX	BruAb1_1114	-	ATP-dependent protease ATP-binding subunit
1033	 56.51	0	1102995..1103624	-	209	62290024	clpP	BruAb1_1115	-	ATP-dependent Clp protease proteolytic subunit
1034	 59.55	0	1103729..1105147	-	472	62290025	-	BruAb1_1116	-	GTP-binding protein
1035	 45.57	-2	1105338..1105574	-	78	62290026	hfq	BruAb1_1117	-	RNA-binding protein Hfq
1036	 48.33	-2	1105580..1105819	-	79	62290027	-	BruAb1_1118	-	hypothetical protein
1037	 56.28	0	1106682..1108058	-	458	62290028	trkA	BruAb1_1120	-	potassium transporter peripheral membrane component
1038	 60.21	0	1108083..1109444	-	453	62290029	ntrX	BruAb1_1121	-	NtrX, nitrogen regulation protein NtrX
1039	 57.12	0	1109446..1111770	-	774	62290030	ntrY	BruAb1_1122	-	NtrY, nitrogen regulation protein NtrY
1040	 59.42	0	1111861..1113336	-	491	62290031	ntrC	BruAb1_1123	-	NtrC, nitrogen regulation protein NtrC
1041	 59.67	0	1113333..1114475	-	380	62290032	ntrB	BruAb1_1124	-	NtrB, nitrogen regulation protein NtrB
1042	 58.68	0	1114475..1115476	-	333	62290033	nifR3	BruAb1_1125	-	NifR3, nitrogen regulation protein Nifr3
1043	 59.02	0	1115614..1116843	+	409	161611212	ispDF	BruAb1_1126	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1044	 59.24	0	1116840..1117337	+	165	62290035	cinA	BruAb1_1127	-	CinA, competence/damage-inducible protein CinA
1045	 53.16	0	1118214..1118672	-	152	62290036	-	BruAb1_1129	-	hypothetical protein
1046	 56.45	0	1118678..1119646	-	322	62290037	lipA	BruAb1_1130	-	lipoyl synthase
1047	 64.81	+1	1119756..1119917	-	53	62290038	-	BruAb1_1131	-	hypothetical protein
1048	 58.95	0	1120036..1121499	-	487	62290039	lpdA-1	BruAb1_1132	-	dihydrolipoamide dehydrogenase
1049	 59.67	0	1121582..1122925	-	447	62290040	aceF	BruAb1_1133	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1050	 57.50	0	1122943..1124328	-	461	62290041	pdhB	BruAb1_1134	-	pyruvate dehydrogenase subunit beta
1051	 55.91	0	1124347..1125387	-	346	62290042	pdhA	BruAb1_1135	-	PdhA, pyruvate dehydrogenase complex, E1 component, alpha subunit
1052	 49.70	-1	1125526..1125855	-	109	62290043	-	BruAb1_1136	-	hypothetical protein
1053	 49.66	-1	1126127..1126708	-	193	62290044	-	BruAb1_1137	-	hypothetical protein
1054	 57.51	0	1127045..1128322	-	425	62290045	eno	BruAb1_1138	-	enolase
1055	 57.07	0	1128509..1129342	-	277	62290046	kdsA	BruAb1_1139	-	2-dehydro-3-deoxyphosphooctonate aldolase
1056	 55.62	0	1129448..1131076	-	542	62290047	pyrG	BruAb1_1140	-	CTP synthetase
1057	 47.15	-2	1131089..1131211	-	40	62290048	-	BruAb1_1141	-	hypothetical protein
1058	 57.29	0	1131346..1132038	-	230	62290049	-	BruAb1_1142	-	hypothetical protein
1059	 63.53	+1	1132292..1132738	-	148	62290050	secG	BruAb1_1143	-	preprotein translocase subunit SecG
1060	 59.61	0	1132838..1133602	-	254	62290051	tpiA	BruAb1_1144	-	triosephosphate isomerase
1061	 59.25	0	1133821..1135707	+	628	62290052	-	BruAb1_1145	-	rotamase family protein
1062	 61.76	+1	1135722..1136741	+	339	62290053	trpD	BruAb1_1146	-	anthranilate phosphoribosyltransferase
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.