IslandPathversion 1.0

IslandPath Analysis: Borrelia turicatae 91E135



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.24 STD DEV: 3.53
Borrelia turicatae 91E135, complete genome - 1..917330
818 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
611	 28.67	0	681373..682422	-	349	119953417	-	BT0639	-	spermidine/putrescine-binding protein
612	 26.77	0	682440..683231	-	263	119953418	-	BT0640	-	spermidine/putrescine transport system permease protein PotC
613	 28.68	0	683247..684062	-	271	119953419	-	BT0641	-	spermidine/putrescine transport system permease protein PotB
614	 30.46	0	684050..685093	-	347	119953420	-	BT0642	-	spermidine/putrescine transport ATP-binding protein PotA
615	 25.16	-1	685165..686082	-	305	119953421	-	BT0643	-	GTP-binding protein
616	 33.97	+1	686252..686881	+	209	119953422	-	BT0644	-	N-acetylmannosamine-6-phosphate 2-epimerase
617	 33.33	+1	686922..688466	+	514	119953423	-	BT0645	-	PTS system, glucose-specific IIBC component
618	 30.38	0	688508..689524	-	338	119953424	-	BT0646	-	carboxylesterase
619	 27.36	0	689505..690023	-	172	119953425	-	BT0647	-	oxidative stress response regulator BosR
620	 23.88	-1	690115..691806	-	563	119953426	-	BT0648	-	serine/threonine kinase, putative
621	 35.66	+1	692025..693659	+	544	119953427	-	BT0649	-	60 kDa chaperonin GroEL
622	 31.65	0	693718..694014	+	98	119953428	-	BT0650	-	hypothetical protein
623	 28.09	0	694015..694338	+	107	119953429	-	BT0651	-	protein translocase subunit YajC
624	 31.19	0	694420..696192	+	590	119953430	-	BT0652	-	protein translocase subunit SecD
625	 25.22	-1	696176..697075	+	299	119953431	-	BT0653	-	protein translocase subunit SecF
626	 24.05	-1	697099..698250	+	383	119953432	-	BT0654	-	hypothetical protein
627	 27.02	0	698256..699095	-	279	119953433	-	BT0655	-	chaperone protein DnaJ
628	 27.63	0	699216..700355	+	379	119953434	-	BT0656	-	coproporphyrinogen oxidase, anaerobic
629	 30.28	0	700342..701028	-	228	119953435	-	BT0657	-	ribose 5-phosphate isomerase
630	 34.27	+1	701256..702002	+	248	119953436	-	BT0658	-	phosphoglycerate mutase
631	 30.71	0	702090..703652	-	520	119953437	-	BT0659	-	class 1 lysyl-tRNA synthetase
632	 25.89	0	703740..704612	-	290	119953438	-	BT0660	-	GTP-binding protein era-like
633	 31.23	0	704680..705060	+	126	119953439	-	BT0660A	-	hypothetical protein
634	 26.96	0	705073..705480	+	135	119953440	-	BT0662	-	hypothetical protein
635	 28.97	0	705477..705911	+	144	119953441	-	BT0663	-	hypothetical protein
636	 27.01	0	705912..706559	-	215	119953442	-	BT0664	-	hypothetical protein
637	 27.29	0	706603..707562	+	319	119953443	-	BT0665	-	hypothetical protein
638	 29.24	0	707525..708550	+	341	119953444	-	BT0666	-	N-acetylmuramoyl-L-alanine amidase
639	 22.22	-1	708531..709052	+	173	119953445	-	BT0667	-	flagellar filament outsheath protein
640	 33.05	+1	709130..710179	+	349	119953446	-	BT0668	-	flagellar filament outer layer protein
641	 31.46	0	710251..712815	+	854	119953447	-	BT0669	-	chemotaxis protein CheA
642	 27.92	0	712820..714205	+	461	119953448	-	BT0670	-	chemotaxis protein CheW
643	 34.36	+1	714217..714702	+	161	119953449	-	BT0671	-	pili chemotaxis protein methyltransferase CheR-like PilK
644	 32.20	0	714751..715191	+	146	119953450	-	BT0672	-	two-component response regulator
645	 22.81	-1	715212..715724	-	170	119953451	-	BT0673	-	hypothetical protein
646	 23.69	-1	715721..716767	-	348	119953452	-	BT0674	-	hypothetical protein
647	 24.88	-1	716761..717624	-	287	119953453	-	BT0675	-	hypothetical protein
648	 31.22	0	717621..718283	-	220	119953454	-	BT0676	-	putative phosphatase
649	 31.15	0	718474..720075	+	533	119953455	-	BT0677	-	nucleoside transport ATP-binding protein
650	 30.30	0	720076..721227	+	383	119953456	-	BT0678	-	nucleoside transport system permease protein
651	 33.76	+1	721199..722125	+	308	119953457	-	BT0679	-	sugar transport system permease protein
652	 32.36	0	722253..724502	+	749	119953458	-	BT0680	-	methyl-accepting chemotaxis protein
653	 32.65	0	724532..726439	+	635	119953459	-	BT0681	-	methyl-accepting chemotaxis protein
654	 30.33	0	726495..727559	-	354	119953460	-	BT0682	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
655	 30.63	0	727588..728880	+	430	119953461	-	BT0683	-	hydroxymethylglutaryl-CoA synthase
656	 32.87	+1	728849..729928	+	359	119953462	-	BT0684	-	isopentenyl-diphosphate delta-isomerase
657	 31.45	0	729894..731168	+	424	119953463	-	BT0685	-	probable 3-hydroxy-3-methylglutaryl-coenzyme A reductase
658	 30.67	0	731170..732108	+	312	119953464	-	BT0686	-	diphosphomevalonate decarboxylase
659	 27.71	0	732099..733040	+	313	119953465	-	BT0687	-	phosphomevalonate kinase, putative
660	 29.53	0	733041..733934	+	297	119953466	-	BT0688	-	mevalonate kinase
661	 28.60	0	734182..734625	-	147	119953467	-	BT0689	-	hypothetical protein
662	 28.38	0	734695..735219	+	174	119953468	-	BT0690	-	neutrophil-activating protein A
663	 32.65	0	735293..737350	+	685	119953469	-	BT0691	-	protein translation elongation factor G (EF-G)
664	 30.69	0	737669..738877	+	402	119953470	-	BT0693	-	xylose repressor
665	 33.41	+1	738938..740287	+	449	119953471	-	BT0694	-	signal recognition particle, subunit FFH/SRP54
666	 34.13	+1	740284..740535	+	83	119953472	-	BT0695	-	SSU ribosomal protein S16P
667	 34.14	+1	740545..740793	+	82	119953473	-	BT0696	-	RNA binding protein
668	 28.54	0	740797..741297	+	166	119953474	-	BT0697	-	16S rRNA processing protein RimM
669	 32.36	0	741294..742013	+	239	119953475	-	BT0698	-	tRNA (guanine-N(1)-)-methyltransferase
670	 31.42	0	741988..742353	+	121	119953476	-	BT0699	-	LSU ribosomal protein L19P
671	 23.59	-1	742331..743161	+	276	119953477	-	BT0699A	-	hypothetical protein
672	 29.89	0	743170..743430	+	86	119953478	-	BT0699B	-	flagellar biosynthetic protein FlhB
673	 29.37	0	743689..744243	+	184	119953479	-	BT0701	-	hypothetical protein
674	 27.91	0	744246..744743	+	165	119953480	-	BT0702	-	phosphopantetheine adenylyltransferase
675	 34.97	+1	744795..744977	+	60	119953481	-	BT0703	-	LSU ribosomal protein L32P
676	 32.95	+1	744979..745242	+	87	119953482	-	BT0704	-	acyl carrier protein
677	 30.75	0	745248..745982	+	244	119953483	-	BT0705	-	ribonuclease III
678	 24.02	-1	745954..747177	-	407	119953484	-	BT0706	-	poly(A) polymerase
679	 25.14	-1	747264..749069	+	601	119953485	-	BT0707	-	hypothetical protein
680	 20.56	-2	749076..749396	+	106	119953486	-	BT0708	-	hypothetical protein
681	 29.37	0	749859..750893	+	344	119953487	-	BT0709	-	hypothetical protein
682	 28.66	0	750900..752675	+	591	119953488	-	BT0710	-	DNA primase
683	 32.33	0	752668..754560	+	630	119953489	-	BT0712	-	RNA polymerase sigma factor RpoD
684	 31.23	0	754573..755331	+	252	119953490	-	BT0713	-	Zn-ribbon protein
685	 25.36	-1	755729..756694	+	321	119953491	-	BT0714	-	tetratricopeptide repeat family protein
686	 36.00	+1	756707..757756	+	349	119953492	-	BT0715	-	rod shape-determining protein MreB
687	 28.72	0	757759..758604	+	281	119953493	-	BT0716	-	rod shape-determining protein MreC
688	 19.25	-2	758601..759083	+	160	119953494	-	BT0717	-	rod shape-determining protein MreD
689	 32.00	0	759085..760887	+	600	119953495	-	BT0718	-	cell elongation specific D,D-transpeptidase
690	 27.05	0	760893..762212	+	439	119953496	-	BT0719	-	rod shape-determining protein RodA
691	 33.16	+1	762367..764118	+	583	119953497	-	BT0720	-	threonyl-tRNA synthetase
692	 22.92	-1	764120..764743	+	207	119953498	-	BT0721	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
693	 26.33	0	764733..766175	+	480	119953499	-	BT0722	-	hypothetical protein
694	 19.62	-2	766152..766676	-	174	119953500	-	BT0723	-	adenylate cyclase
695	 30.84	0	766761..768086	+	441	119953501	-	BT0724	-	potassium uptake protein KtrB
696	 29.63	0	768093..768875	+	260	119953502	-	BT0725	-	potassium uptake protein KtrA
697	 29.12	0	768888..769859	+	323	119953503	-	BT0726	-	ATP-binding protein
698	 33.33	+1	769899..771248	+	449	119953504	-	BT0727	-	pyrophosphate--fructose 6-phosphate 1-phosphotransferase
699	 32.13	0	771264..772595	-	443	119953505	-	BT0728	-	NADH dehydrogenase
700	 32.83	+1	772605..773993	-	462	119953506	-	BT0729	-	sodium:dicarboxylate symporter family protein YhcL
701	 30.36	0	774075..775655	-	526	119953507	-	BT0730	-	glucose-6-phosphate isomerase
702	 23.46	-1	775684..776088	-	134	119953508	-	BT0731	-	chromosome partitioning protein ParB
703	 31.57	0	776094..778868	-	924	119953509	-	BT0732	-	multimodular transpeptidase-transglycosylase PBP 1A
704	 30.53	0	779268..780053	+	261	119953510	-	BT0733	-	hypothetical protein
705	 29.94	0	780037..781155	+	372	119953511	-	BT0733A	-	tetratricopeptide repeat family protein
706	 32.44	0	781173..782183	-	336	119953512	-	BT0734	-	Sua5/YciO/YrdC/YwlC family protein
707	 30.59	0	782292..783092	+	266	119953513	-	BT0735	-	rare lipoprotein A
708	 25.51	-1	783082..785139	-	685	119953514	-	BT0735A	-	ATP-dependent helicase, DinG family
709	 29.42	0	785515..786510	+	331	119953515	-	BT0737	-	histidine phosphokinase/phophatase, putative
710	 31.24	0	786510..789134	+	874	119953516	-	BT0738	-	valyl-tRNA synthetase
29.24	MEAN

3.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.