IslandPathversion 1.0

IslandPath Analysis: Borrelia turicatae 91E135



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.24 STD DEV: 3.53
Borrelia turicatae 91E135, complete genome - 1..917330
818 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
162	 26.88	0	169983..172028	-	681	119952968	-	BT0170	-	hypothetical protein
163	 30.10	0	171977..172564	-	195	119952969	-	BT0171	-	hypothetical cytosolic protein
164	 26.36	0	172546..173535	-	329	119952970	-	BT0172	-	hypothetical membrane spanning protein
165	 29.53	0	173532..174557	-	341	119952971	-	BT0173	-	hypothetical membrane spanning protein
166	 26.89	0	174520..175419	-	299	119952972	-	BT0174	-	hypothetical protein
167	 27.44	0	175416..176297	-	293	119952973	-	BT0175	-	hypothetical cytosolic protein
168	 35.65	+1	176313..177305	-	330	119952974	-	BT0176	-	MoxR protein
169	 29.01	0	177376..177999	-	207	119952975	-	BT0177	-	methyltransferase GidB
170	 33.97	+1	177996..179882	-	628	119952976	-	BT0178	-	putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase subunit GidA
171	 31.40	0	179867..181261	-	464	119952977	-	BT0179	-	tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
172	 24.85	-1	181397..181891	+	164	119952978	-	BT0180	-	flagellar protein FlbF
173	 32.38	0	181910..183793	+	627	119952979	-	BT0181	-	flagellar hook-associated protein 1
174	 31.84	0	183797..185071	+	424	119952980	-	BT0182	-	flagellar hook-associated protein 3
175	 26.72	0	185073..185465	+	130	119952981	-	BT0183	-	transmembrane protein
176	 22.78	-1	185468..185704	+	78	119952982	-	BT0184	-	carbon storage regulator
177	 27.75	0	185689..186351	-	220	119952983	-	BT0185	-	O-sialoglycoprotein endopeptidase
178	 27.74	0	186332..186760	-	142	119952984	-	BT0186	-	ATP/GTP hydrolase
179	 31.43	0	186757..187071	-	104	119952985	-	BT0187	-	hypothetical protein
180	 29.02	0	187221..187568	-	115	119952986	-	BT0188	-	LSU ribosomal protein L20P
181	 27.78	0	187590..187787	-	65	119952987	-	BT0189	-	LSU ribosomal protein L35P
182	 33.69	+1	187804..188364	-	186	119952988	-	BT0190	-	bacterial protein translation initiation factor 3 (IF-3)
183	 22.78	-1	188542..189204	+	220	119952989	-	BT0192	-	hypothetical protein
184	 19.68	-2	189204..189950	+	248	119952990	-	BT0193	-	hypothetical protein
185	 26.57	0	190041..190838	-	265	119952991	-	BT0194	-	sec-independent protein translocase protein TatD
186	 30.62	0	190835..191977	-	380	119952992	-	BT0195	-	tetratricopeptide repeat family protein
187	 31.10	0	192275..193348	+	357	119952993	-	BT0196	-	bacterial peptide chain release factor 1
188	 26.02	0	193358..194191	+	277	119952994	-	BT0197	-	peptide release factor-glutamine N5-methyltransferase
189	 28.49	0	194175..196178	+	667	119952995	-	BT0198	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
190	 22.19	-1	196168..198411	+	747	119952996	-	BT0199	-	pili chemotaxis protein CheA-like PilL
191	 30.15	0	198408..199505	-	365	119952997	-	BT0200	-	D-alanine--D-alanine ligase
192	 29.98	0	199507..201027	-	506	119952998	-	BT0201	-	UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
193	 29.31	0	201335..202576	+	413	119952999	-	BT0202	-	magnesium and cobalt efflux protein CorC
194	 28.51	0	202602..203534	+	310	119953000	-	BT0203	-	protease activity modulator HflK
195	 30.66	0	203536..204507	+	323	119953001	-	BT0204	-	protease activity modulator HflC
196	 26.89	0	205033..206661	+	542	119953002	-	BT0205	-	hypothetical protein
197	 29.30	0	206667..207212	-	181	119953003	-	BT0206	-	methyltransferase
198	 29.84	0	207298..208128	+	276	119953004	-	BT0207	-	UTP--glucose-1-phosphate uridylyltransferase
199	 21.89	-2	208129..209814	+	561	119953005	-	BT0208	-	hypothetical protein
200	 28.24	0	209891..211579	+	562	119953006	-	BT0209	-	mucin 2 precursor
201	 26.51	0	211572..213929	+	785	119953007	-	BT0210	-	surface-located membrane protein 1
202	 28.33	0	213926..215764	+	612	119953008	-	BT0211	-	DNA mismatch repair protein MutL
203	 22.00	-2	215785..216825	+	346	119953009	-	BT0212	-	hypothetical protein
204	 25.11	-1	217000..217656	-	218	119953010	-	BT0213	-	hypothetical protein
205	 33.68	+1	217634..218212	-	192	119953011	-	BT0214	-	protein translation elongation factor P (EF-P)
206	 30.68	0	218279..219184	+	301	119953012	-	BT0215	-	phosphate-binding protein
207	 31.35	0	219268..220176	+	302	119953013	-	BT0216	-	phosphate transport system permease protein PstC
208	 27.50	0	220173..221714	+	513	119953014	-	BT0217	-	phosphate transport system permease protein PstA
209	 31.11	0	221715..222479	+	254	119953015	-	BT0218	-	phosphate transport ATP-binding protein PstB
210	 34.06	+1	222480..223301	-	273	119953016	-	BT0219	-	zinc uptake transporter
211	 33.28	+1	223318..225099	-	593	119953017	-	BT0220	-	alanyl-tRNA synthetase
212	 27.58	0	225099..226349	-	416	119953018	-	BT0221	-	flagellar motor switch protein FliG
213	 30.28	0	226297..227016	-	239	119953019	-	BT0222	-	6-phosphogluconolactonase
214	 29.06	0	227019..227720	-	233	119953020	-	BT0223	-	hypothetical protein
215	 30.16	0	227792..228799	+	335	119953021	-	BT0225	-	NIFR3-like protein
216	 34.12	+1	228789..230066	-	425	119953022	-	BT0226	-	seryl-tRNA synthetase
217	 25.38	-1	230211..230927	+	238	119953023	-	BT0227	-	hypothetical protein
218	 26.65	0	230940..233858	+	972	119953024	-	BT0228	-	metalloprotease, insulinase family
219	 25.43	-1	233875..234165	-	96	119953025	-	BT0229	-	LSU ribosomal protein L31P
220	 32.17	0	234181..235725	-	514	119953026	-	BT0230	-	transcription termination factor Rho
221	 27.21	0	235814..236221	-	135	119953027	-	BT0231	-	hypothetical cytosolic protein
222	 29.97	0	236225..236551	-	108	119953028	-	BT0232	-	DNA-binding protein HbbU
223	 30.23	0	236563..236820	-	85	119953029	-	BT0233	-	SSU ribosomal protein S20P
224	 21.78	-2	236894..237715	-	273	119953030	-	BT0234	-	hypothetical membrane associated protein
225	 33.15	+1	237733..238839	-	368	119953031	-	BT0235	-	GTP-binding protein
226	 28.92	0	238865..240928	-	687	119953032	-	BT0236	-	tetratricopeptide repeat family protein
227	 29.21	0	241028..242581	+	517	119953033	-	BT0237	-	apolipoprotein N-acyltransferase
228	 29.86	0	242545..243321	-	258	119953034	-	BT0238	-	hypothetical protein
229	 29.45	0	243379..243996	-	205	119953035	-	BT0239	-	deoxyguanosine kinase
230	 23.50	-1	244234..244650	+	138	119953036	-	BT0239A	-	hypothetical protein
231	 35.17	+1	244795..245556	+	253	119953037	-	BT0240	-	glycerol uptake facilitator protein
232	 34.00	+1	245612..247111	+	499	119953038	-	BT0241	-	glycerol kinase
233	 33.48	+1	247216..248580	+	454	119953039	-	BT0241A	-	glycerol-3-phosphate transporter
234	 31.07	0	248654..249670	+	338	119953040	-	BT0241B	-	glycerophosphoryl diester phosphodiesterase
235	 30.65	0	249712..251274	+	520	119953041	-	BT0243	-	glycerol-3-phosphate dehydrogenase
236	 27.47	0	251360..251854	-	164	119953042	-	BT0244	-	UDP-N-acetylenolpyruvoylglucosamine reductase
237	 30.39	0	251851..252393	-	180	119953043	-	BT0245	-	hypothetical cytosolic protein
238	 30.42	0	252394..253422	-	342	119953044	-	BT0246	-	cell wall endopeptidase, family M23/M37
239	 25.50	-1	253649..254248	+	199	119953045	-	BT0247	-	nucleoside-triphosphatase
240	 28.03	0	254382..256154	+	590	119953046	-	BT0248	-	oligoendopeptidase F
241	 26.84	0	256166..256873	+	235	119953047	-	BT0249	-	phosphatidylcholine synthase
242	 27.26	0	256883..257491	+	202	119953048	-	BT0250	-	alkaline phosphatase like protein
243	 31.59	0	257736..260264	+	842	119953049	-	BT0251	-	leucyl-tRNA synthetase
244	 27.47	0	260275..262560	+	761	119953050	-	BT0252	-	transporter, RND superfamily
245	 30.68	0	262619..265066	-	815	119953051	-	BT0253	-	ATP-dependent protease La
246	 22.85	-1	265134..265820	+	228	119953052	-	BT0253A	-	hypothetical protein
247	 25.20	-1	265843..267957	+	704	119953053	-	BT0254	-	single-stranded-DNA-specific exonuclease RecJ
248	 28.54	0	267957..268895	+	312	119953054	-	BT0255	-	cell wall endopeptidase, family M23/M37
249	 27.85	0	268906..269124	+	72	119953055	-	BT0256	-	SSU ribosomal protein S21P
250	 30.60	0	269164..271506	-	780	119953056	-	BT0257	-	cell division protein FtsK
251	 27.69	0	271520..272317	-	265	119953057	-	BT0258	-	bacitracin resistance protein
252	 27.54	0	272330..274522	-	730	119953058	-	BT0259	-	soluble lytic murein transglycosylase
253	 29.13	0	274452..275735	-	427	119953059	-	BT0260	-	hypothetical protein
254	 27.21	0	275835..277205	+	456	119953060	-	BT0261	-	tetratricopeptide repeat family protein
255	 28.44	0	277207..278472	-	421	119953061	-	BT0262	-	cell wall endopeptidase, family M23/M37
256	 25.79	0	278525..279028	+	167	119953062	-	BT0263	-	signal peptidase I
257	 31.42	0	279074..280585	-	503	119953063	-	BT0264	-	chaperone protein DnaK
258	 25.10	-1	280582..281079	-	165	119953064	-	BT0265	-	hypothetical protein
259	 28.53	0	281101..281412	-	103	119953065	-	BT0266	-	hypothetical protein
260	 32.81	+1	281437..283335	-	632	119953066	-	BT0267	-	hypothetical protein
261	 27.37	0	283338..283823	-	161	119953067	-	BT0268	-	hypothetical protein
29.24	MEAN

3.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.