IslandPath Analysis: Borrelia recurrentis A1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.65   STD DEV: 3.61
Borrelia recurrentis A1, complete genome - 1..930981
800 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
702	 26.38	0	810730..811347	+	205	203288173	nth	BRE_753	-	endonuclease III
703	 23.71	-1	811355..812206	-	283	203288174	oppC-2	BRE_754	-	oligopeptide ABC transporter, permease protein
704	 24.68	0	812206..813153	-	315	203288175	oppB-2	BRE_755	-	oligopeptide ABC transporter, permease protein
705	 22.68	-1	813189..813629	-	146	203288176	-	BRE_756	-	hypothetical protein
706	 28.44	0	813781..815352	+	523	203288177	-	BRE_757	-	uncharaterized conserved protein
707	 25.52	0	815862..816911	-	349	203288178	-	BRE_758	-	hypothetical protein
708	 25.22	0	816871..818373	-	500	203288179	-	BRE_759	-	hypothetical protein
709	 26.80	0	818381..819115	-	244	203288180	-	BRE_760	-	putative ABC-2 type transport system permease protein
710	 27.51	0	819112..820038	-	308	203288181	-	BRE_761	-	putative ABC-2 type transport system ATP-binding protein
711	 26.25	0	820060..821019	-	319	203288182	-	BRE_762	-	ribonuclease Z
712	 24.44	0	821325..822404	-	359	203288183	-	BRE_763	-	hypothetical protein
713	 31.47	+1	822555..823145	+	196	203288184	clpP-2	BRE_764	-	ATP-dependent Clp protease proteolytic component
714	 22.61	-1	823087..823851	+	254	203288185	-	BRE_765	-	putative lipoprotein
715	 24.91	0	823996..824862	-	288	203288186	-	BRE_767	-	hypothetical protein
716	 29.39	0	824897..825226	-	109	203288187	-	BRE_768	-	hypothetical protein
717	 26.80	0	825327..826214	+	295	203288188	-	BRE_769	-	hypothetical protein
718	 28.98	0	826429..827784	-	451	203288189	rrp-2	BRE_770	-	response regulatory protein
719	 22.65	-1	827777..828937	-	386	203288190	-	BRE_771	-	sensory transduction histidine kinase, putative
720	 21.74	-1	828937..829980	-	347	203288191	-	BRE_772	-	DNA polymerase III gamma and tau subunit
721	 25.25	0	829998..830492	-	164	203288192	-	BRE_773	-	colicin V production protein, putative
722	 26.85	0	830461..831570	-	369	203288193	murG	BRE_774	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
723	 25.41	0	831700..832494	-	264	203288194	pdxK	BRE_775	-	pyridoxal kinase
724	 30.68	0	832491..833507	-	338	203288195	gcp	BRE_776	-	sialoglycoprotease
725	 23.16	-1	833476..834399	-	307	203288196	-	BRE_777	-	hypothetical protein
726	 27.49	0	834445..835248	-	267	203288197	rpoS	BRE_778	-	RNA polymerase sigma factor
727	 22.22	-1	835360..835692	-	110	203288198	flgJ	BRE_779	-	flagellum-specific muramidase
728	 23.24	-1	835695..836675	-	326	203288199	flgI	BRE_780	-	flagellar P-ring protein
729	 21.44	-1	836871..837509	-	212	203288200	-	BRE_781	-	hypothetical protein
730	 35.21	+2	837506..838303	-	265	203288201	flgG	BRE_782	-	flagellar basal-body rod protein
731	 31.51	+1	838318..839193	-	291	203288202	flhO	BRE_783	-	flagellar hook-basal body complex protein
732	 30.19	0	839395..839967	+	190	203288203	-	BRE_784	-	hypothetical protein
733	 32.62	+1	839972..840532	+	186	203288204	apt	BRE_785	-	adenine phosphoribosyltransferase
734	 31.78	+1	840661..840981	+	106	203288205	rplU	BRE_786	-	50S ribosomal protein L21
735	 26.43	0	840985..841317	+	110	203288206	-	BRE_787	-	hypothetical protein
736	 30.89	0	841304..841549	+	81	203288207	rpmA	BRE_788	-	50S ribosomal protein L27
737	 32.11	+1	841599..842582	+	327	203288208	obg	BRE_789	-	GTP-binding protein Obg
738	 28.82	0	842674..843249	+	191	203288209	nadD	BRE_790	-	nicotinate-nucleotide adenylyltransferase
739	 25.40	0	843250..844434	+	394	203288210	-	BRE_791	-	hypothetical protein
740	 28.06	0	844400..844759	+	119	203288211	-	BRE_792	-	hypothetical protein
741	 28.87	0	844858..845148	+	96	203288212	-	BRE_793	-	stage V sporulation protein G
742	 30.24	0	845313..845861	+	182	203288213	ctc	BRE_795	-	50S ribosomal protein L25, general stress protein
743	 29.10	0	845867..846433	+	188	203288214	pth	BRE_796	-	peptidyl-tRNA hydrolase
744	 24.24	0	846430..847749	+	439	203288215	-	BRE_797	-	cell cycle protein
745	 33.02	+1	847746..849656	+	636	203288216	ftsH	BRE_798	-	cell division protein
746	 24.68	0	849679..851157	+	492	203288217	-	BRE_799	-	hypothetical protein
747	 28.82	0	851171..852811	+	546	203288218	-	BRE_800	-	trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain
748	 26.47	0	852817..853953	+	378	203288219	tdk	BRE_801	-	thymidine kinase
749	 23.30	-1	853961..854578	-	205	203288220	-	BRE_802	-	hypothetical protein
750	 24.79	0	854611..855219	-	202	203288221	tmk	BRE_803	-	thymidylate kinase
751	 24.70	0	855294..859685	+	1463	203288222	-	BRE_804	-	hypothetical protein
752	 27.90	0	859633..862155	+	840	203288223	-	BRE_805	-	outer membrane protein
753	 26.01	0	862188..862706	+	172	203288224	-	BRE_806	-	hypothetical protein
754	 21.18	-1	862737..863246	-	169	203288225	-	BRE_807	-	hypothetical protein
755	 26.92	0	863306..865894	+	862	203288226	mutS	BRE_808	-	DNA mismatch repair protein
756	 24.54	0	866626..867057	+	143	203288227	-	BRE_810	-	hypothetical protein
757	 30.51	0	867032..868516	+	494	203288228	nusA	BRE_811	-	N-utilization substance protein A
758	 33.07	+1	868497..871136	+	879	203288229	infB	BRE_812	-	translation initiation factor IF-2
759	 26.15	0	871126..871515	+	129	203288230	rbfA	BRE_813	-	ribosome-binding factor A
760	 28.01	0	871525..872370	+	281	203288231	truB	BRE_814	-	tRNA pseudouridine 55 synthase
761	 29.24	0	872592..872933	+	113	203288232	rpsO	BRE_815	-	30S ribosomal protein S15
762	 32.87	+1	872947..875100	+	717	203288233	pnpA	BRE_816	-	polyribonucleotide nucleotidyltransferase
763	 25.20	0	875110..876621	+	503	203288234	-	BRE_817	-	hypothetical protein
764	 24.73	0	876596..877885	+	429	203288235	-	BRE_818	-	hypothetical protein
765	 23.82	-1	877741..878949	+	402	203288236	-	BRE_819	-	hypothetical protein
766	 30.50	0	878967..880094	+	375	203288237	tgt	BRE_820	-	tRNA-guanine transglycosylase
767	 25.26	0	880087..881610	+	507	203288238	mviN	BRE_821	-	virulence factor MviN protein
768	 27.11	0	881607..883037	+	476	203288239	-	BRE_822	-	hypothetical protein
769	 25.89	0	883031..884293	-	420	203288240	dfp	BRE_823	-	pantothenate metabolism flavoprotein
770	 25.88	0	884449..885870	+	473	203288241	panF	BRE_824	-	pantothenate permease
771	 26.15	0	885875..886849	+	324	203288242	rluA	BRE_825	-	RNA pseudouridylate synthase family protein
772	 26.43	0	886818..887759	+	313	203288243	-	BRE_826	-	hypothetical protein
773	 27.45	0	887707..889167	+	486	203288244	murC	BRE_827	-	UDP-N-acetylmuramate--alanine ligase
774	 24.71	0	889179..890048	+	289	203288245	-	BRE_828	-	hypothetical protein
775	 26.11	0	890045..890584	+	179	203288246	-	BRE_829	-	cytidylate kinase
776	 27.71	0	890574..890804	+	76	203288247	-	BRE_830	-	hypothetical protein
777	 27.57	0	890791..891693	+	300	203288248	miaA	BRE_831	-	2-methylthio-N6-isopentyladenosine tRNA modification enzyme
778	 22.69	-1	891849..892205	-	118	203288249	-	BRE_832	-	hypothetical protein
779	 24.77	0	892283..892831	+	182	203288250	-	BRE_833	-	hypothetical protein
780	 24.81	0	892803..893612	-	269	203288251	-	BRE_834	-	hypothetical protein
781	 20.08	-2	893605..894117	-	170	203288252	-	BRE_835	-	hypothetical protein
782	 32.64	+1	894163..895599	-	478	203288253	nagE	BRE_836	-	Sugar Specific PTS family, n-acetylglucosamine-specific enzyme IIABC
783	 26.42	0	895689..898175	-	828	203288254	hrpA	BRE_837	-	ATP-dependent helicase
784	 27.11	0	898179..900716	-	845	203288255	topA	BRE_838	-	DNA topoisomerase I
785	 26.44	0	900793..902025	+	410	203288256	sbcD	BRE_839	-	exonuclease SbcD
786	 24.30	0	902012..904867	+	951	203288257	sbcC	BRE_840	-	exonuclease SbcC
787	 31.12	0	905899..906486	+	195	203288258	cutC	BRE_842	-	copper homeostasis protein cutC
788	 23.03	-1	906558..907382	-	274	203288259	-	BRE_843	-	putative lipoprotein
789	 27.62	0	907370..910504	-	1044	203288260	ileS	BRE_844	-	isoleucyl-tRNA synthetase
790	 25.77	0	910489..912723	-	744	203288261	clpC	BRE_845	-	ATP-dependent Clp protease, subunit C
791	 26.96	0	912740..914449	-	569	203288262	cpsG	BRE_846	-	phosphomannomutase
792	 29.67	0	914565..916529	+	654	203288263	uvrB	BRE_847	-	excinuclease ABC, subunit B
793	 31.50	+1	916557..919397	+	946	203288264	uvrA	BRE_848	-	excinuclease ABC, subunit A
794	 24.57	0	919352..922810	+	1152	203288265	-	BRE_849	-	hypothetical protein
795	 26.60	0	922858..923451	-	197	203288266	-	BRE_850	-	hypothetical protein
796	 27.43	0	923458..925032	-	524	203288267	-	BRE_851	-	putative lipoprotein
797	 31.06	0	925218..926447	+	409	203288268	arcA	BRE_852	-	arginine deiminase
798	 32.57	+1	926411..927460	+	349	203288269	arcB	BRE_853	-	ornithine carbamoyltransferase, catabolic
799	 34.18	+1	927513..928928	+	471	203288270	-	BRE_854	-	hypothetical protein
800	 27.24	0	930214..930951	+	245	203288271	-	BRE_856	-	putative permease
27.65	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.