IslandPath Analysis: Borrelia recurrentis A1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.65   STD DEV: 3.61
Borrelia recurrentis A1, complete genome - 1..930981
800 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
639	 28.37	0	734780..735928	+	382	203288110	rbsC-1	BRE_684	-	ribose/galactose ABC transporter, permease protein
640	 32.79	+1	735900..736826	+	308	203288111	rbsC-2	BRE_685	-	ribose/galactose ABC transporter, permease protein
641	 31.39	+1	736994..739201	+	735	203288112	mcp-4	BRE_686	-	methyl-accepting chemotaxis protein
642	 29.61	0	739231..741138	+	635	203288113	mcp-5	BRE_687	-	methyl-accepting chemotaxis protein
643	 27.32	0	741194..742258	-	354	203288114	-	BRE_688	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
644	 30.07	0	742356..743582	+	408	203288115	-	BRE_689	-	3-hydroxy-3-methylglutaryl-CoA synthase
645	 30.37	0	743551..744630	+	359	203288116	-	BRE_690	-	isopentenyl-diphosphate delta-isomerase
646	 28.62	0	744620..745870	+	416	203288117	mvaA	BRE_691	-	3-hydroxy-3-methylglutaryl-CoA reductase
647	 28.56	0	745872..746813	+	313	203288118	mvaD	BRE_692	-	mevalonate pyrophosphate decarboxylase
648	 27.39	0	746801..747742	+	313	203288119	-	BRE_693	-	phosphomevalonate kinase, putative
649	 26.73	0	747743..748636	+	297	203288120	mvaK	BRE_694	-	mevalonate kinase
650	 28.04	0	748888..749340	-	150	203288121	-	BRE_696	-	hypothetical protein
651	 25.99	0	749410..749913	+	167	203288122	napA_2	BRE_697	-	neutrophil activating protein
652	 31.11	0	750044..752068	+	674	203288123	fus-2	BRE_698	-	translation elongation factor G
653	 28.78	0	752345..753553	+	402	203288124	xylR-1	BRE_699	-	xylose operon regulatory protein
654	 32.59	+1	753613..754962	+	449	203288125	ffh	BRE_700	-	signal recognition particle protein
655	 32.54	+1	754959..755210	+	83	203288126	rpsP	BRE_701	-	30S ribosomal protein S16
656	 32.53	+1	755220..755468	+	82	203288127	-	BRE_702	-	hypothetical protein
657	 27.74	0	755472..755972	+	166	203288128	rimM	BRE_703	-	16S rRNA processing protein RimM
658	 31.95	+1	755969..756691	+	240	203288129	trmD	BRE_704	-	tRNA-(guanine-N1)-methyltransferase
659	 30.62	0	756666..757034	+	122	203288130	rplS	BRE_705	-	50S ribosomal protein L19
660	 28.52	0	757965..758525	+	186	203288131	-	BRE_706	-	hypothetical protein
661	 25.50	0	758528..759025	+	165	203288132	kdtB	BRE_707	-	pantetheine-phosphate adenylyltransferase
662	 34.97	+2	759077..759259	+	60	203288133	rpmF	BRE_708	-	50S ribosomal protein L32
663	 32.58	+1	759261..759524	+	87	203288134	-	BRE_709	-	acyl carrier protein
664	 29.37	0	759530..760261	+	243	203288135	rnc	BRE_710	-	ribonuclease III
665	 22.09	-1	760233..761531	-	432	203288136	papS	BRE_711	-	tRNA nucleotidyltransferase (CCA-adding enzyme)
666	 24.74	0	761696..763348	+	550	203288137	-	BRE_712	-	hypothetical protein
667	 22.01	-1	763355..763672	+	105	203288138	-	BRE_713	-	hypothetical protein
668	 26.86	0	764139..765173	+	344	203288139	-	BRE_716	-	hypothetical protein
669	 26.46	0	765181..766956	+	591	203288140	dnaG	BRE_717	-	DNA primase
670	 30.38	0	766949..768841	+	630	203288141	rpoD	BRE_718	-	RNA polymerase sigma-70 factor
671	 31.15	0	768838..769614	+	258	203288142	-	BRE_719	-	hypothetical protein
672	 24.84	0	770009..770974	+	321	203288143	-	BRE_720	-	hypothetical protein
673	 33.90	+1	770987..772036	+	349	203288144	mreB-1	BRE_721	-	rod shape-determining protein
674	 27.42	0	772039..772884	+	281	203288145	mreC	BRE_722	-	rod shape-determining protein
675	 20.08	-2	772881..773363	+	160	203288146	-	BRE_723	-	hypothetical protein
676	 30.28	0	773369..775168	+	599	203288147	pbp-2	BRE_724	-	penicillin-binding protein
677	 26.36	0	775172..776491	+	439	203288148	mreB-2	BRE_725	-	rod shape-determining protein
678	 31.74	+1	776649..778400	+	583	203288149	thrZ	BRE_726	-	threonyl-tRNA synthetase
679	 21.96	-1	778402..779025	+	207	203288150	-	BRE_727	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
680	 24.64	0	779006..780454	+	482	203288151	-	BRE_728	-	hypothetical protein
681	 18.01	-2	780431..780952	-	173	203288152	-	BRE_729	-	adenylyl cyclase, CyaB-type, putative
682	 29.62	0	781043..782362	+	439	203288153	ntpJ	BRE_730	-	K transport protein
683	 27.46	0	782369..783151	+	260	203288154	-	BRE_731	-	hypothetical protein
684	 28.09	0	783164..784135	+	323	203288155	ylxH-3	BRE_732	-	MinD-related ATP-binding protein
685	 32.22	+1	784172..785515	+	447	203288156	pfk	BRE_733	-	pyrophosphate--fructose 6-phosphate 1-phosphotransferase (pfk)
686	 30.11	0	785541..786872	-	443	203288157	nox	BRE_734	-	NADH oxidase, water-forming
687	 31.81	+1	786885..788267	-	460	203288158	gltP	BRE_735	-	glutamate transporter
688	 28.25	0	788311..789885	-	524	203288159	pgi	BRE_736	-	glucose-6-phosphate isomerase
689	 21.98	-1	789922..790326	-	134	203288160	-	BRE_737	-	hypothetical protein
690	 29.99	0	790333..793110	-	925	203288161	pbp-3	BRE_738	-	penicillin-binding protein
691	 26.11	0	793600..794388	+	262	203288162	-	BRE_739	-	hypothetical protein
692	 26.15	0	794372..795484	+	370	203288163	-	BRE_740	-	TPR domain protein
693	 29.25	0	795492..796496	-	334	203288164	-	BRE_741	-	hypothetical protein
694	 31.29	+1	796596..797426	+	276	203288165	rlpA	BRE_742	-	rare lipoprotein A
695	 24.18	0	797416..799470	-	684	203288166	-	BRE_743	-	ATP-dependent helicase, DinG family
696	 26.96	0	799704..800723	+	339	203288167	-	BRE_744	-	histidine phosphokinase/phophatase, putative
697	 29.35	0	800723..803356	+	877	203288168	valS	BRE_745	-	valyl-tRNA synthetase
698	 28.67	0	804257..804535	-	92	203288169	groES	BRE_747	-	chaperonin groES
699	 30.64	0	804673..806304	+	543	203288170	-	BRE_748	-	ABC transporter, ATP-binding protein
700	 27.22	0	806327..808012	+	561	203288171	-	BRE_749	-	hypothetical protein
701	 28.76	0	808141..810390	+	749	203288172	-	BRE_750	-	antigen, p83/100
702	 26.38	0	810730..811347	+	205	203288173	nth	BRE_753	-	endonuclease III
703	 23.71	-1	811355..812206	-	283	203288174	oppC-2	BRE_754	-	oligopeptide ABC transporter, permease protein
704	 24.68	0	812206..813153	-	315	203288175	oppB-2	BRE_755	-	oligopeptide ABC transporter, permease protein
705	 22.68	-1	813189..813629	-	146	203288176	-	BRE_756	-	hypothetical protein
706	 28.44	0	813781..815352	+	523	203288177	-	BRE_757	-	uncharaterized conserved protein
707	 25.52	0	815862..816911	-	349	203288178	-	BRE_758	-	hypothetical protein
708	 25.22	0	816871..818373	-	500	203288179	-	BRE_759	-	hypothetical protein
709	 26.80	0	818381..819115	-	244	203288180	-	BRE_760	-	putative ABC-2 type transport system permease protein
710	 27.51	0	819112..820038	-	308	203288181	-	BRE_761	-	putative ABC-2 type transport system ATP-binding protein
711	 26.25	0	820060..821019	-	319	203288182	-	BRE_762	-	ribonuclease Z
712	 24.44	0	821325..822404	-	359	203288183	-	BRE_763	-	hypothetical protein
713	 31.47	+1	822555..823145	+	196	203288184	clpP-2	BRE_764	-	ATP-dependent Clp protease proteolytic component
714	 22.61	-1	823087..823851	+	254	203288185	-	BRE_765	-	putative lipoprotein
715	 24.91	0	823996..824862	-	288	203288186	-	BRE_767	-	hypothetical protein
716	 29.39	0	824897..825226	-	109	203288187	-	BRE_768	-	hypothetical protein
717	 26.80	0	825327..826214	+	295	203288188	-	BRE_769	-	hypothetical protein
718	 28.98	0	826429..827784	-	451	203288189	rrp-2	BRE_770	-	response regulatory protein
719	 22.65	-1	827777..828937	-	386	203288190	-	BRE_771	-	sensory transduction histidine kinase, putative
720	 21.74	-1	828937..829980	-	347	203288191	-	BRE_772	-	DNA polymerase III gamma and tau subunit
721	 25.25	0	829998..830492	-	164	203288192	-	BRE_773	-	colicin V production protein, putative
722	 26.85	0	830461..831570	-	369	203288193	murG	BRE_774	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
723	 25.41	0	831700..832494	-	264	203288194	pdxK	BRE_775	-	pyridoxal kinase
724	 30.68	0	832491..833507	-	338	203288195	gcp	BRE_776	-	sialoglycoprotease
725	 23.16	-1	833476..834399	-	307	203288196	-	BRE_777	-	hypothetical protein
726	 27.49	0	834445..835248	-	267	203288197	rpoS	BRE_778	-	RNA polymerase sigma factor
727	 22.22	-1	835360..835692	-	110	203288198	flgJ	BRE_779	-	flagellum-specific muramidase
728	 23.24	-1	835695..836675	-	326	203288199	flgI	BRE_780	-	flagellar P-ring protein
729	 21.44	-1	836871..837509	-	212	203288200	-	BRE_781	-	hypothetical protein
730	 35.21	+2	837506..838303	-	265	203288201	flgG	BRE_782	-	flagellar basal-body rod protein
731	 31.51	+1	838318..839193	-	291	203288202	flhO	BRE_783	-	flagellar hook-basal body complex protein
732	 30.19	0	839395..839967	+	190	203288203	-	BRE_784	-	hypothetical protein
733	 32.62	+1	839972..840532	+	186	203288204	apt	BRE_785	-	adenine phosphoribosyltransferase
734	 31.78	+1	840661..840981	+	106	203288205	rplU	BRE_786	-	50S ribosomal protein L21
735	 26.43	0	840985..841317	+	110	203288206	-	BRE_787	-	hypothetical protein
736	 30.89	0	841304..841549	+	81	203288207	rpmA	BRE_788	-	50S ribosomal protein L27
737	 32.11	+1	841599..842582	+	327	203288208	obg	BRE_789	-	GTP-binding protein Obg
738	 28.82	0	842674..843249	+	191	203288209	nadD	BRE_790	-	nicotinate-nucleotide adenylyltransferase
27.65	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.