IslandPathversion 1.0

IslandPath Analysis: Borrelia recurrentis A1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 27.65 STD DEV: 3.61
Borrelia recurrentis A1, complete genome - 1..930981
800 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
580	 23.72	-1	662571..663839	-	422	203288051	-	BRE_622	-	hypothetical protein
581	 24.22	0	663941..664324	+	127	203288052	-	BRE_623	-	hypothetical protein
582	 28.95	0	664360..664815	-	151	203288053	cdd	BRE_624	-	cytidine deaminase
583	 30.00	0	664949..665908	+	319	203288054	-	BRE_625	-	hypothetical protein
584	 25.36	0	665898..667553	-	551	203288055	-	BRE_626	-	beta-glucosidase, putative
585	 32.97	+1	667864..668409	+	181	203288056	thiJ	BRE_628	-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein
586	 26.73	0	668503..669729	-	408	203288057	ackA	BRE_629	-	acetate kinase
587	 25.37	0	669740..673117	-	1125	203288058	mfd	BRE_630	-	transcription-repair coupling factor
588	 27.00	0	673216..674178	+	320	203288059	-	BRE_631	-	hypothetical protein
589	 27.57	0	674114..676213	+	699	203288060	-	BRE_632	-	N-acetylmuramoyl-L-alanine amidase, putative
590	 29.47	0	676903..678171	-	422	203288061	pepX	BRE_634	-	vacuolar X-prolyl dipeptidyl aminopeptidase I
591	 27.55	0	678275..679000	+	241	203288062	-	BRE_635	-	putative lipoprotein
592	 31.34	+1	679044..680903	-	619	203288063	fruA-2	BRE_636	-	PTS system, fructose-specific IIABC component
593	 30.94	0	681058..681975	+	305	203288064	fruK	BRE_637	-	1-phosphofructokinase
594	 23.04	-1	682168..683994	-	608	203288065	recD	BRE_639	-	exodeoxyribonuclease V, alpha chain
595	 23.03	-1	684003..687446	-	1147	203288066	recB	BRE_640	-	exodeoxyribonuclease V, beta chain
596	 22.19	-1	687453..690665	-	1070	203288067	recC	BRE_641	-	exodeoxyribonuclease V, gamma chain
597	 26.42	0	690670..692115	-	481	203288068	-	BRE_642	-	nicotinate phosphoribosyltransferase
598	 27.55	0	692286..693719	+	477	203288069	zwf	BRE_643	-	glucose-6-phosphate 1-dehydrogenase
599	 30.92	0	694644..695969	+	441	203288070	nhaC-2	BRE_644	-	Na+/H+ antiporter
600	 26.89	0	696001..697056	-	351	203288071	potD	BRE_645	-	spermidine/putrescine ABC transporter, binding periplasmic protein
601	 25.25	0	697068..697859	-	263	203288072	potC	BRE_646	-	spermidine/putrescine ABC transporter, permease protein
602	 25.12	0	697869..698672	-	267	203288073	potB	BRE_647	-	spermidine/putrescine ABC transporter, permease protein
603	 28.93	0	698678..699721	-	347	203288074	potA	BRE_648	-	spermidine/putrescine ABC transporter, ATP-binding protein
604	 24.54	0	699808..700683	-	291	203288075	-	BRE_649	-	conserved hypothetical GTP-binding protein
605	 33.18	+1	700835..701500	+	221	203288076	-	BRE_650	-	N-acylglucosamine-6-phosphate 2-epimerase
606	 33.78	+1	701540..703099	+	519	203288077	ptsG	BRE_651	-	PTS system, glucose-specific IIBC component
607	 29.18	0	703128..704114	-	328	203288078	-	BRE_652	-	hypothetical protein
608	 28.90	0	704127..704645	-	172	203288079	fur	BRE_653	-	ferric uptake regulation protein
609	 22.71	-1	704737..706431	-	564	203288080	-	BRE_654	-	serine/threonine kinase, putative
610	 34.50	+1	706652..708286	+	544	203288081	groEL	BRE_655	-	heat shock protein
611	 30.30	0	708347..708643	+	98	203288082	-	BRE_656	-	hypothetical protein
612	 29.01	0	708659..708982	+	107	203288083	yajC	BRE_657	-	preprotein translocase YajC subunit
613	 30.61	0	709063..710826	+	587	203288084	secD	BRE_658	-	protein-export membrane protein
614	 24.97	0	710810..711706	+	298	203288085	secF	BRE_659	-	protein-export membrane protein
615	 24.91	0	711730..712881	+	383	203288086	-	BRE_660	-	hypothetical protein
616	 24.97	0	712878..713726	-	282	203288087	dnaJ-2	BRE_661	-	heat shock protein
617	 25.88	0	713847..714986	+	379	203288088	-	BRE_662	-	HemN-related protein
618	 27.66	0	714973..715659	-	228	203288089	rpi	BRE_663	-	ribose 5-phosphate isomerase A
619	 32.80	+1	715882..716634	+	250	203288090	gpmA	BRE_664	-	phosphoglycerate mutase
620	 28.71	0	716720..718318	-	532	203288091	lysS	BRE_665	-	lysyl-tRNA synthetase
621	 24.63	0	718368..719240	-	290	203288092	era	BRE_666	-	GTP-binding protein
622	 27.87	0	719337..719684	+	115	203288093	-	BRE_667	-	hypothetical protein
623	 22.55	-1	719697..720104	+	135	203288094	-	BRE_668	-	hypothetical protein
624	 26.90	0	720101..720535	+	144	203288095	-	BRE_669	-	hypothetical protein
625	 25.45	0	720537..721196	-	219	203288096	-	BRE_670	-	hypothetical protein
626	 25.00	0	721242..722201	+	319	203288097	-	BRE_671	-	hypothetical protein
627	 27.49	0	722164..723189	+	341	203288098	-	BRE_672	-	N-acetylmuramoyl-L-alanine amidase
628	 21.68	-1	723170..723718	+	182	203288099	-	BRE_673	-	hypothetical protein
629	 32.29	+1	723795..724844	+	349	203288100	flaA	BRE_674	-	flagellar filament outer layer protein
630	 28.90	0	724915..727506	+	863	203288101	cheA-2	BRE_675	-	chemotaxis histidine kinase
631	 26.75	0	727512..728909	+	465	203288102	cheW-3	BRE_676	-	purine-binding chemotaxis protein CheW
632	 33.33	+1	728921..729406	+	161	203288103	cheX	BRE_677	-	chemotaxis protein CheX
633	 32.43	+1	729455..729895	+	146	203288104	cheY3	BRE_678	-	chemotaxis response regulator
634	 21.71	-1	729908..730423	-	171	203288105	-	BRE_679	-	hypothetical protein
635	 20.95	-1	730420..731469	-	349	203288106	-	BRE_680	-	hypothetical protein
636	 20.25	-2	731463..732326	-	287	203288107	-	BRE_681	-	hypothetical protein
637	 28.09	0	732323..733009	-	228	203288108	gph	BRE_682	-	phosphoglycolate phosphatase
638	 28.72	0	733193..734776	+	527	203288109	mglA	BRE_683	-	ribose/galactose ABC transporter, ATP-binding protein
639	 28.37	0	734780..735928	+	382	203288110	rbsC-1	BRE_684	-	ribose/galactose ABC transporter, permease protein
640	 32.79	+1	735900..736826	+	308	203288111	rbsC-2	BRE_685	-	ribose/galactose ABC transporter, permease protein
641	 31.39	+1	736994..739201	+	735	203288112	mcp-4	BRE_686	-	methyl-accepting chemotaxis protein
642	 29.61	0	739231..741138	+	635	203288113	mcp-5	BRE_687	-	methyl-accepting chemotaxis protein
643	 27.32	0	741194..742258	-	354	203288114	-	BRE_688	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
644	 30.07	0	742356..743582	+	408	203288115	-	BRE_689	-	3-hydroxy-3-methylglutaryl-CoA synthase
645	 30.37	0	743551..744630	+	359	203288116	-	BRE_690	-	isopentenyl-diphosphate delta-isomerase
646	 28.62	0	744620..745870	+	416	203288117	mvaA	BRE_691	-	3-hydroxy-3-methylglutaryl-CoA reductase
647	 28.56	0	745872..746813	+	313	203288118	mvaD	BRE_692	-	mevalonate pyrophosphate decarboxylase
648	 27.39	0	746801..747742	+	313	203288119	-	BRE_693	-	phosphomevalonate kinase, putative
649	 26.73	0	747743..748636	+	297	203288120	mvaK	BRE_694	-	mevalonate kinase
650	 28.04	0	748888..749340	-	150	203288121	-	BRE_696	-	hypothetical protein
651	 25.99	0	749410..749913	+	167	203288122	napA_2	BRE_697	-	neutrophil activating protein
652	 31.11	0	750044..752068	+	674	203288123	fus-2	BRE_698	-	translation elongation factor G
653	 28.78	0	752345..753553	+	402	203288124	xylR-1	BRE_699	-	xylose operon regulatory protein
654	 32.59	+1	753613..754962	+	449	203288125	ffh	BRE_700	-	signal recognition particle protein
655	 32.54	+1	754959..755210	+	83	203288126	rpsP	BRE_701	-	30S ribosomal protein S16
656	 32.53	+1	755220..755468	+	82	203288127	-	BRE_702	-	hypothetical protein
657	 27.74	0	755472..755972	+	166	203288128	rimM	BRE_703	-	16S rRNA processing protein RimM
658	 31.95	+1	755969..756691	+	240	203288129	trmD	BRE_704	-	tRNA-(guanine-N1)-methyltransferase
659	 30.62	0	756666..757034	+	122	203288130	rplS	BRE_705	-	50S ribosomal protein L19
660	 28.52	0	757965..758525	+	186	203288131	-	BRE_706	-	hypothetical protein
661	 25.50	0	758528..759025	+	165	203288132	kdtB	BRE_707	-	pantetheine-phosphate adenylyltransferase
662	 34.97	+2	759077..759259	+	60	203288133	rpmF	BRE_708	-	50S ribosomal protein L32
663	 32.58	+1	759261..759524	+	87	203288134	-	BRE_709	-	acyl carrier protein
664	 29.37	0	759530..760261	+	243	203288135	rnc	BRE_710	-	ribonuclease III
665	 22.09	-1	760233..761531	-	432	203288136	papS	BRE_711	-	tRNA nucleotidyltransferase (CCA-adding enzyme)
666	 24.74	0	761696..763348	+	550	203288137	-	BRE_712	-	hypothetical protein
667	 22.01	-1	763355..763672	+	105	203288138	-	BRE_713	-	hypothetical protein
668	 26.86	0	764139..765173	+	344	203288139	-	BRE_716	-	hypothetical protein
669	 26.46	0	765181..766956	+	591	203288140	dnaG	BRE_717	-	DNA primase
670	 30.38	0	766949..768841	+	630	203288141	rpoD	BRE_718	-	RNA polymerase sigma-70 factor
671	 31.15	0	768838..769614	+	258	203288142	-	BRE_719	-	hypothetical protein
672	 24.84	0	770009..770974	+	321	203288143	-	BRE_720	-	hypothetical protein
673	 33.90	+1	770987..772036	+	349	203288144	mreB-1	BRE_721	-	rod shape-determining protein
674	 27.42	0	772039..772884	+	281	203288145	mreC	BRE_722	-	rod shape-determining protein
675	 20.08	-2	772881..773363	+	160	203288146	-	BRE_723	-	hypothetical protein
676	 30.28	0	773369..775168	+	599	203288147	pbp-2	BRE_724	-	penicillin-binding protein
677	 26.36	0	775172..776491	+	439	203288148	mreB-2	BRE_725	-	rod shape-determining protein
678	 31.74	+1	776649..778400	+	583	203288149	thrZ	BRE_726	-	threonyl-tRNA synthetase
679	 21.96	-1	778402..779025	+	207	203288150	-	BRE_727	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
27.65	MEAN

3.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.