IslandPath Analysis: Borrelia recurrentis A1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.65   STD DEV: 3.61
Borrelia recurrentis A1, complete genome - 1..930981
800 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
540	 29.17	0	606700..608043	+	447	203288011	-	BRE_576	-	hypothetical protein
541	 26.81	0	608142..608831	-	229	203288012	smbA	BRE_578	-	uridylate kinase
542	 25.63	0	609048..610112	+	354	203288013	lgtD	BRE_579	-	glycosyl transferase
543	 24.57	0	610174..610995	+	273	203288014	-	BRE_580	-	ABC transporter, ATP-binding protein
544	 22.11	-1	610988..611869	+	293	203288015	-	BRE_581	-	hypothetical protein
545	 31.04	0	612097..613752	+	551	203288016	pyrG	BRE_582	-	CTP synthase
546	 26.24	0	613815..614420	+	201	203288017	-	BRE_583	-	hypothetical protein
547	 27.04	0	614529..615704	+	391	203288018	mcp-1	BRE_584	-	methyl-accepting chemotaxis protein
548	 30.19	0	615828..619262	+	1144	203288019	dnaE	BRE_585	-	DNA polymerase III, subunit alpha
549	 24.96	0	619274..619846	+	190	203288020	-	BRE_586	-	hypothetical protein
550	 28.97	0	619856..621919	+	687	203288021	recG	BRE_587	-	DNA recombinase
551	 23.54	-1	621906..622763	-	285	203288022	-	BRE_588	-	carboxypeptidase, putative
552	 26.64	0	623204..624547	+	447	203288023	-	BRE_589	-	hypothetical protein
553	 26.62	0	624572..625927	+	451	203288024	murD	BRE_590	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
554	 23.62	-1	625924..626973	-	349	203288025	femA	BRE_591	-	FemA protein
555	 27.51	0	626995..629175	-	726	203288026	metG	BRE_592	-	methionyl-tRNA synthetase
556	 31.28	+1	629287..630357	+	356	203288027	pta	BRE_593	-	phosphate acetyltransferase
557	 24.24	0	630340..631164	-	274	203288028	ksgA	BRE_594	-	dimethyladenosine transferase
558	 20.82	-1	631199..632596	-	465	203288029	-	BRE_595	-	competence locus E, putative
559	 26.45	0	632595..633320	+	241	203288030	-	BRE_596	-	hypothetical protein
560	 30.12	0	633330..635261	+	643	203288031	-	BRE_597	-	long-chain-fatty-acid CoA ligase
561	 26.62	0	635293..637050	-	585	203288032	argS	BRE_598	-	arginyl-tRNA synthetase
562	 22.28	-1	637043..637621	-	192	203288033	-	BRE_599	-	hypothetical protein
563	 26.43	0	637637..639853	-	738	203288034	mcp-2	BRE_600	-	methyl-accepting chemotaxis protein
564	 25.26	0	640009..642249	+	746	203288035	mcp-3	BRE_601	-	methyl-accepting chemotaxis protein
565	 24.95	0	642251..643204	-	317	203288036	murB	BRE_602	-	UDP-N-acetylmuramate dehydrogenase
566	 27.43	0	643358..644815	+	485	203288037	cysS	BRE_603	-	cysteinyl-tRNA synthetase
567	 24.00	-1	644819..646372	+	517	203288038	-	BRE_604	-	hypothetical protein
568	 33.41	+1	646362..647615	+	417	203288039	glyA	BRE_605	-	serine hydroxymethyltransferase
569	 24.58	0	647630..648394	+	254	203288040	dnaJ	BRE_606	-	chaperone protein DnaJ
570	 30.51	0	648492..650330	-	612	203288041	-	BRE_607	-	membrane-associated protein P66
571	 30.99	0	650554..652089	-	511	203288042	lctP	BRE_608	-	L-lactate permease
572	 26.65	0	652059..653060	+	333	203288043	dacA	BRE_609	-	serine-type D-Ala-D-Ala carboxypeptidase
573	 32.14	+1	653314..653817	+	167	203288044	-	BRE_610	-	chemotaxis protein CheD
574	 30.24	0	653996..655417	+	473	203288045	pepD	BRE_611	-	aminoacyl-histidine dipeptidase
575	 27.77	0	655947..657293	+	448	203288046	tig	BRE_616	-	trigger factor
576	 33.67	+1	657293..657892	+	199	203288047	clpP-1	BRE_617	-	ATP-dependent Clp protease proteolytic component
577	 32.64	+1	657915..659204	+	429	203288048	clpX	BRE_618	-	ATP-dependent Clp protease, subunit X
578	 29.23	0	659149..661587	+	812	203288049	lon-2	BRE_619	-	ATP-dependent protease LA
579	 32.54	+1	661797..662423	-	208	203288050	rpsD	BRE_620	-	30S ribosomal protein S4
580	 23.72	-1	662571..663839	-	422	203288051	-	BRE_622	-	hypothetical protein
581	 24.22	0	663941..664324	+	127	203288052	-	BRE_623	-	hypothetical protein
582	 28.95	0	664360..664815	-	151	203288053	cdd	BRE_624	-	cytidine deaminase
583	 30.00	0	664949..665908	+	319	203288054	-	BRE_625	-	hypothetical protein
584	 25.36	0	665898..667553	-	551	203288055	-	BRE_626	-	beta-glucosidase, putative
585	 32.97	+1	667864..668409	+	181	203288056	thiJ	BRE_628	-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein
586	 26.73	0	668503..669729	-	408	203288057	ackA	BRE_629	-	acetate kinase
587	 25.37	0	669740..673117	-	1125	203288058	mfd	BRE_630	-	transcription-repair coupling factor
588	 27.00	0	673216..674178	+	320	203288059	-	BRE_631	-	hypothetical protein
589	 27.57	0	674114..676213	+	699	203288060	-	BRE_632	-	N-acetylmuramoyl-L-alanine amidase, putative
590	 29.47	0	676903..678171	-	422	203288061	pepX	BRE_634	-	vacuolar X-prolyl dipeptidyl aminopeptidase I
591	 27.55	0	678275..679000	+	241	203288062	-	BRE_635	-	putative lipoprotein
592	 31.34	+1	679044..680903	-	619	203288063	fruA-2	BRE_636	-	PTS system, fructose-specific IIABC component
593	 30.94	0	681058..681975	+	305	203288064	fruK	BRE_637	-	1-phosphofructokinase
594	 23.04	-1	682168..683994	-	608	203288065	recD	BRE_639	-	exodeoxyribonuclease V, alpha chain
595	 23.03	-1	684003..687446	-	1147	203288066	recB	BRE_640	-	exodeoxyribonuclease V, beta chain
596	 22.19	-1	687453..690665	-	1070	203288067	recC	BRE_641	-	exodeoxyribonuclease V, gamma chain
597	 26.42	0	690670..692115	-	481	203288068	-	BRE_642	-	nicotinate phosphoribosyltransferase
598	 27.55	0	692286..693719	+	477	203288069	zwf	BRE_643	-	glucose-6-phosphate 1-dehydrogenase
599	 30.92	0	694644..695969	+	441	203288070	nhaC-2	BRE_644	-	Na+/H+ antiporter
600	 26.89	0	696001..697056	-	351	203288071	potD	BRE_645	-	spermidine/putrescine ABC transporter, binding periplasmic protein
601	 25.25	0	697068..697859	-	263	203288072	potC	BRE_646	-	spermidine/putrescine ABC transporter, permease protein
602	 25.12	0	697869..698672	-	267	203288073	potB	BRE_647	-	spermidine/putrescine ABC transporter, permease protein
603	 28.93	0	698678..699721	-	347	203288074	potA	BRE_648	-	spermidine/putrescine ABC transporter, ATP-binding protein
604	 24.54	0	699808..700683	-	291	203288075	-	BRE_649	-	conserved hypothetical GTP-binding protein
605	 33.18	+1	700835..701500	+	221	203288076	-	BRE_650	-	N-acylglucosamine-6-phosphate 2-epimerase
606	 33.78	+1	701540..703099	+	519	203288077	ptsG	BRE_651	-	PTS system, glucose-specific IIBC component
607	 29.18	0	703128..704114	-	328	203288078	-	BRE_652	-	hypothetical protein
608	 28.90	0	704127..704645	-	172	203288079	fur	BRE_653	-	ferric uptake regulation protein
609	 22.71	-1	704737..706431	-	564	203288080	-	BRE_654	-	serine/threonine kinase, putative
610	 34.50	+1	706652..708286	+	544	203288081	groEL	BRE_655	-	heat shock protein
611	 30.30	0	708347..708643	+	98	203288082	-	BRE_656	-	hypothetical protein
612	 29.01	0	708659..708982	+	107	203288083	yajC	BRE_657	-	preprotein translocase YajC subunit
613	 30.61	0	709063..710826	+	587	203288084	secD	BRE_658	-	protein-export membrane protein
614	 24.97	0	710810..711706	+	298	203288085	secF	BRE_659	-	protein-export membrane protein
615	 24.91	0	711730..712881	+	383	203288086	-	BRE_660	-	hypothetical protein
616	 24.97	0	712878..713726	-	282	203288087	dnaJ-2	BRE_661	-	heat shock protein
617	 25.88	0	713847..714986	+	379	203288088	-	BRE_662	-	HemN-related protein
618	 27.66	0	714973..715659	-	228	203288089	rpi	BRE_663	-	ribose 5-phosphate isomerase A
619	 32.80	+1	715882..716634	+	250	203288090	gpmA	BRE_664	-	phosphoglycerate mutase
620	 28.71	0	716720..718318	-	532	203288091	lysS	BRE_665	-	lysyl-tRNA synthetase
621	 24.63	0	718368..719240	-	290	203288092	era	BRE_666	-	GTP-binding protein
622	 27.87	0	719337..719684	+	115	203288093	-	BRE_667	-	hypothetical protein
623	 22.55	-1	719697..720104	+	135	203288094	-	BRE_668	-	hypothetical protein
624	 26.90	0	720101..720535	+	144	203288095	-	BRE_669	-	hypothetical protein
625	 25.45	0	720537..721196	-	219	203288096	-	BRE_670	-	hypothetical protein
626	 25.00	0	721242..722201	+	319	203288097	-	BRE_671	-	hypothetical protein
627	 27.49	0	722164..723189	+	341	203288098	-	BRE_672	-	N-acetylmuramoyl-L-alanine amidase
628	 21.68	-1	723170..723718	+	182	203288099	-	BRE_673	-	hypothetical protein
629	 32.29	+1	723795..724844	+	349	203288100	flaA	BRE_674	-	flagellar filament outer layer protein
630	 28.90	0	724915..727506	+	863	203288101	cheA-2	BRE_675	-	chemotaxis histidine kinase
631	 26.75	0	727512..728909	+	465	203288102	cheW-3	BRE_676	-	purine-binding chemotaxis protein CheW
632	 33.33	+1	728921..729406	+	161	203288103	cheX	BRE_677	-	chemotaxis protein CheX
633	 32.43	+1	729455..729895	+	146	203288104	cheY3	BRE_678	-	chemotaxis response regulator
634	 21.71	-1	729908..730423	-	171	203288105	-	BRE_679	-	hypothetical protein
635	 20.95	-1	730420..731469	-	349	203288106	-	BRE_680	-	hypothetical protein
636	 20.25	-2	731463..732326	-	287	203288107	-	BRE_681	-	hypothetical protein
637	 28.09	0	732323..733009	-	228	203288108	gph	BRE_682	-	phosphoglycolate phosphatase
638	 28.72	0	733193..734776	+	527	203288109	mglA	BRE_683	-	ribose/galactose ABC transporter, ATP-binding protein
639	 28.37	0	734780..735928	+	382	203288110	rbsC-1	BRE_684	-	ribose/galactose ABC transporter, permease protein
27.65	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.