IslandPath Analysis: Borrelia recurrentis A1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.65   STD DEV: 3.61
Borrelia recurrentis A1, complete genome - 1..930981
800 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
496	 26.54	0	557937..558731	+	264	203287967	-	BRE_529	-	pantothenate kinase
497	 24.43	0	558709..559539	-	276	203287968	-	BRE_530	-	hypothetical protein
498	 28.10	0	559520..560131	-	203	203287969	-	BRE_531	-	hypothetical protein
499	 23.02	-1	560134..561423	-	429	203287970	-	BRE_532	-	hypothetical protein
500	 28.72	0	561584..562342	+	252	203287971	phnP	BRE_533	-	phnP protein
501	 28.63	0	562354..563118	+	254	203287972	exoA	BRE_534	-	exodeoxyribonuclease III
502	 25.07	0	563142..563903	+	253	203287973	-	BRE_535	-	hypothetical protein
503	 26.65	0	563900..566725	+	941	203287974	-	BRE_536	-	zinc protease, putative; lipoprotein
504	 22.69	-1	566748..568184	-	478	203287975	-	BRE_537	-	hypothetical protein
505	 26.70	0	568609..569256	-	215	203287976	-	BRE_541	-	TPR domain protein
506	 29.06	0	569253..569603	-	116	203287977	-	BRE_542	-	hypothetical protein
507	 28.74	0	569692..570387	-	231	203287978	-	BRE_543	-	hypothetical protein
508	 32.90	+1	570400..572481	-	693	203287979	fus-1	BRE_544	-	translation elongation factor G
509	 27.57	0	573018..573260	+	80	203287980	-	BRE_545	-	hypothetical protein
510	 30.29	0	573463..574548	+	361	203287981	-	BRE_546	-	hypothetical protein
511	 25.72	0	574652..575203	+	183	203287982	-	BRE_547	-	hypothetical protein
512	 29.60	0	575258..575926	+	222	203287983	-	BRE_548	-	hypothetical protein
513	 30.38	0	576084..577304	+	406	203287984	prs	BRE_549	-	phosphoribosyl pyrophosphate synthetase
514	 24.69	0	577309..578673	+	454	203287985	xylB	BRE_550	-	xylulokinase
515	 24.96	0	578656..579360	-	234	203287986	-	BRE_551	-	hypothetical protein
516	 21.78	-1	579360..579956	-	198	203287987	coaE	BRE_552	-	dephospho-CoA kinase
517	 26.25	0	579935..582703	-	922	203287988	polA	BRE_553	-	DNA polymerase I
518	 19.75	-2	582700..583104	-	134	203287989	-	BRE_554	-	hypothetical protein
519	 25.53	0	583094..583516	-	140	203287990	flaJ	BRE_555	-	flagellar protein
520	 28.22	0	583527..583937	-	136	203287991	cheY-1	BRE_556	-	chemotaxis response regulator
521	 27.71	0	584100..586109	+	669	203287992	lig	BRE_557	-	DNA ligase
522	 22.72	-1	586112..588400	-	762	203287993	-	BRE_558	-	hypothetical protein
523	 23.54	-1	588685..590553	+	622	203287994	-	BRE_559	-	hypothetical protein
524	 27.71	0	590540..591001	+	153	203287995	-	BRE_560	-	hypothetical protein
525	 21.25	-1	590998..591858	+	286	203287996	-	BRE_561	-	hypothetical protein
526	 33.72	+1	592018..592278	+	86	203287997	ptsH-2	BRE_562	-	phosphocarrier protein HPr
527	 30.86	0	592279..594015	+	578	203287998	ptsI	BRE_563	-	phosphoenolpyruvate-protein phosphatase
528	 34.21	+1	594019..594588	+	189	203287999	crr	BRE_564	-	PTS system, glucose-specific IIA component
529	 26.30	0	594625..596472	-	615	203288000	htpG	BRE_565	-	heat shock protein 90
530	 28.89	0	596587..597981	+	464	203288001	gnd	BRE_566	-	phosphogluconate dehydrogenase, decarboxylating (gnd)
531	 25.88	0	597996..598532	-	178	203288002	-	BRE_567	-	hypothetical protein
532	 25.43	0	598656..599174	-	172	203288003	-	BRE_568	-	hypothetical protein
533	 29.80	0	599389..599898	-	169	203288004	-	BRE_569	-	hypothetical protein
534	 28.84	0	600237..600770	+	177	203288005	cheW-2	BRE_570	-	purine-binding chemotaxis protein
535	 23.36	-1	600776..601096	+	106	203288006	-	BRE_571	-	hypothetical protein
536	 31.14	0	601120..603261	+	713	203288007	cheA-1	BRE_572	-	chemotaxis histidine kinase
537	 28.82	0	603323..604474	+	383	203288008	cheB-2	BRE_573	-	protein-glutamate methylesterase
538	 25.03	0	604453..606246	+	597	203288009	-	BRE_574	-	hypothetical protein
539	 35.20	+2	606283..606657	+	124	203288010	cheY-2	BRE_575	-	chemotaxis response regulator
540	 29.17	0	606700..608043	+	447	203288011	-	BRE_576	-	hypothetical protein
541	 26.81	0	608142..608831	-	229	203288012	smbA	BRE_578	-	uridylate kinase
542	 25.63	0	609048..610112	+	354	203288013	lgtD	BRE_579	-	glycosyl transferase
543	 24.57	0	610174..610995	+	273	203288014	-	BRE_580	-	ABC transporter, ATP-binding protein
544	 22.11	-1	610988..611869	+	293	203288015	-	BRE_581	-	hypothetical protein
545	 31.04	0	612097..613752	+	551	203288016	pyrG	BRE_582	-	CTP synthase
546	 26.24	0	613815..614420	+	201	203288017	-	BRE_583	-	hypothetical protein
547	 27.04	0	614529..615704	+	391	203288018	mcp-1	BRE_584	-	methyl-accepting chemotaxis protein
548	 30.19	0	615828..619262	+	1144	203288019	dnaE	BRE_585	-	DNA polymerase III, subunit alpha
549	 24.96	0	619274..619846	+	190	203288020	-	BRE_586	-	hypothetical protein
550	 28.97	0	619856..621919	+	687	203288021	recG	BRE_587	-	DNA recombinase
551	 23.54	-1	621906..622763	-	285	203288022	-	BRE_588	-	carboxypeptidase, putative
552	 26.64	0	623204..624547	+	447	203288023	-	BRE_589	-	hypothetical protein
553	 26.62	0	624572..625927	+	451	203288024	murD	BRE_590	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
554	 23.62	-1	625924..626973	-	349	203288025	femA	BRE_591	-	FemA protein
555	 27.51	0	626995..629175	-	726	203288026	metG	BRE_592	-	methionyl-tRNA synthetase
556	 31.28	+1	629287..630357	+	356	203288027	pta	BRE_593	-	phosphate acetyltransferase
557	 24.24	0	630340..631164	-	274	203288028	ksgA	BRE_594	-	dimethyladenosine transferase
558	 20.82	-1	631199..632596	-	465	203288029	-	BRE_595	-	competence locus E, putative
559	 26.45	0	632595..633320	+	241	203288030	-	BRE_596	-	hypothetical protein
560	 30.12	0	633330..635261	+	643	203288031	-	BRE_597	-	long-chain-fatty-acid CoA ligase
561	 26.62	0	635293..637050	-	585	203288032	argS	BRE_598	-	arginyl-tRNA synthetase
562	 22.28	-1	637043..637621	-	192	203288033	-	BRE_599	-	hypothetical protein
563	 26.43	0	637637..639853	-	738	203288034	mcp-2	BRE_600	-	methyl-accepting chemotaxis protein
564	 25.26	0	640009..642249	+	746	203288035	mcp-3	BRE_601	-	methyl-accepting chemotaxis protein
565	 24.95	0	642251..643204	-	317	203288036	murB	BRE_602	-	UDP-N-acetylmuramate dehydrogenase
566	 27.43	0	643358..644815	+	485	203288037	cysS	BRE_603	-	cysteinyl-tRNA synthetase
567	 24.00	-1	644819..646372	+	517	203288038	-	BRE_604	-	hypothetical protein
568	 33.41	+1	646362..647615	+	417	203288039	glyA	BRE_605	-	serine hydroxymethyltransferase
569	 24.58	0	647630..648394	+	254	203288040	dnaJ	BRE_606	-	chaperone protein DnaJ
570	 30.51	0	648492..650330	-	612	203288041	-	BRE_607	-	membrane-associated protein P66
571	 30.99	0	650554..652089	-	511	203288042	lctP	BRE_608	-	L-lactate permease
572	 26.65	0	652059..653060	+	333	203288043	dacA	BRE_609	-	serine-type D-Ala-D-Ala carboxypeptidase
573	 32.14	+1	653314..653817	+	167	203288044	-	BRE_610	-	chemotaxis protein CheD
574	 30.24	0	653996..655417	+	473	203288045	pepD	BRE_611	-	aminoacyl-histidine dipeptidase
575	 27.77	0	655947..657293	+	448	203288046	tig	BRE_616	-	trigger factor
576	 33.67	+1	657293..657892	+	199	203288047	clpP-1	BRE_617	-	ATP-dependent Clp protease proteolytic component
577	 32.64	+1	657915..659204	+	429	203288048	clpX	BRE_618	-	ATP-dependent Clp protease, subunit X
578	 29.23	0	659149..661587	+	812	203288049	lon-2	BRE_619	-	ATP-dependent protease LA
579	 32.54	+1	661797..662423	-	208	203288050	rpsD	BRE_620	-	30S ribosomal protein S4
580	 23.72	-1	662571..663839	-	422	203288051	-	BRE_622	-	hypothetical protein
581	 24.22	0	663941..664324	+	127	203288052	-	BRE_623	-	hypothetical protein
582	 28.95	0	664360..664815	-	151	203288053	cdd	BRE_624	-	cytidine deaminase
583	 30.00	0	664949..665908	+	319	203288054	-	BRE_625	-	hypothetical protein
584	 25.36	0	665898..667553	-	551	203288055	-	BRE_626	-	beta-glucosidase, putative
585	 32.97	+1	667864..668409	+	181	203288056	thiJ	BRE_628	-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein
586	 26.73	0	668503..669729	-	408	203288057	ackA	BRE_629	-	acetate kinase
587	 25.37	0	669740..673117	-	1125	203288058	mfd	BRE_630	-	transcription-repair coupling factor
588	 27.00	0	673216..674178	+	320	203288059	-	BRE_631	-	hypothetical protein
589	 27.57	0	674114..676213	+	699	203288060	-	BRE_632	-	N-acetylmuramoyl-L-alanine amidase, putative
590	 29.47	0	676903..678171	-	422	203288061	pepX	BRE_634	-	vacuolar X-prolyl dipeptidyl aminopeptidase I
591	 27.55	0	678275..679000	+	241	203288062	-	BRE_635	-	putative lipoprotein
592	 31.34	+1	679044..680903	-	619	203288063	fruA-2	BRE_636	-	PTS system, fructose-specific IIABC component
593	 30.94	0	681058..681975	+	305	203288064	fruK	BRE_637	-	1-phosphofructokinase
594	 23.04	-1	682168..683994	-	608	203288065	recD	BRE_639	-	exodeoxyribonuclease V, alpha chain
595	 23.03	-1	684003..687446	-	1147	203288066	recB	BRE_640	-	exodeoxyribonuclease V, beta chain
27.65	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.