IslandPathversion 1.0

IslandPath Analysis: Borrelia recurrentis A1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 27.65 STD DEV: 3.61
Borrelia recurrentis A1, complete genome - 1..930981
800 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
445	 28.94	0	510249..511067	+	272	203287916	-	BRE_478	-	hypothetical protein
446	 33.96	+1	511126..512406	+	426	203287917	murA	BRE_479	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
447	 28.62	0	512643..514001	+	452	203287918	-	BRE_480	-	hypothetical protein
448	 21.91	-1	514148..514471	-	107	203287919	-	BRE_481	-	hypothetical protein
449	 35.70	+2	514819..516003	+	394	203287920	tuf	BRE_482	-	translation elongation factor TU
450	 34.62	+1	516049..516360	+	103	203287921	rpsJ	BRE_483	-	30S ribosomal protein S10
451	 35.56	+2	516394..517023	+	209	203287922	rplC	BRE_484	-	50S ribosomal protein L3
452	 31.75	+1	517025..517654	+	209	203287923	rplD	BRE_485	-	50S ribosomal protein L4
453	 28.28	0	517676..517972	+	98	203287924	rplW	BRE_486	-	50S ribosomal protein L23
454	 38.13	+2	517991..518824	+	277	203287925	rplB	BRE_487	-	50S ribosomal protein L2
455	 34.41	+1	518834..519112	+	92	203287926	rpsS	BRE_488	-	30S ribosomal protein S19
456	 34.44	+1	519119..519481	+	120	203287927	rplV	BRE_489	-	50S ribosomal protein L22
457	 29.72	0	519485..520315	+	276	203287928	rpsC	BRE_490	-	30S ribosomal protein S3
458	 39.09	+2	520334..520750	+	138	203287929	rplP	BRE_491	-	50S ribosomal protein L16
459	 28.86	0	520754..520954	+	66	203287930	rpmC	BRE_492	-	50S ribosomal protein L29
460	 32.94	+1	520960..521214	+	84	203287931	rpsQ	BRE_493	-	30S ribosomal protein S17
461	 37.94	+2	521262..521630	+	122	203287932	rplN	BRE_494	-	50S ribosomal protein L14
462	 29.08	0	521641..521946	+	101	203287933	rplX	BRE_495	-	50S ribosomal protein L24
463	 31.69	+1	521950..522498	+	182	203287934	rplE	BRE_496	-	50S ribosomal protein L5
464	 35.48	+2	522513..522698	+	61	203287935	rpsN	BRE_497	-	30S ribosomal protein S14
465	 30.83	0	522708..523106	+	132	203287936	rpsH	BRE_498	-	30S ribosomal protein S8
466	 31.68	+1	523126..523668	+	180	203287937	rplF	BRE_499	-	50S ribosomal protein L6
467	 30.28	0	523686..524045	+	119	203287938	rplR	BRE_500	-	50S ribosomal protein L18
468	 34.34	+1	524057..524551	+	164	203287939	rpsE	BRE_501	-	30S ribosomal protein S5
469	 28.53	0	524555..524866	+	103	203287940	rpmD	BRE_502	-	50S ribosomal protein L30
470	 32.19	+1	524859..525296	+	145	203287941	rplO	BRE_503	-	50S ribosomal protein L15
471	 28.89	0	525309..526613	+	434	203287942	secY	BRE_504	-	preprotein translocase SecY subunit
472	 25.44	0	526623..526736	+	37	203287943	rpmJ	BRE_505	-	50S ribosomal protein L36
473	 33.60	+1	526746..527123	+	125	203287944	rpsM	BRE_506	-	30S ribosomal protein S13
474	 36.92	+2	527154..527543	+	129	203287945	rpsK	BRE_507	-	30S ribosomal protein S11
475	 29.65	0	527559..528590	+	343	203287946	rpoA	BRE_508	-	DNA-directed RNA polymerase
476	 30.91	0	528609..528980	+	123	203287947	rplQ	BRE_509	-	50S ribosomal protein L17
477	 32.68	+1	529055..530596	+	513	203287948	-	BRE_510	-	hypothetical protein
478	 31.49	+1	530565..531377	+	270	203287949	-	BRE_511	-	hypothetical protein
479	 27.02	0	531358..532149	+	263	203287950	tlyA	BRE_512	-	hemolysin
480	 25.26	0	532146..532925	-	259	203287951	-	BRE_513	-	hypothetical protein
481	 26.98	0	532981..534303	+	440	203287952	-	BRE_514	-	GTP-binding protein
482	 26.87	0	534300..535553	+	417	203287953	-	BRE_515	-	hypothetical protein
483	 25.18	0	535559..536245	+	228	203287954	-	BRE_516	-	putative hydrolase
484	 25.89	0	536264..543250	+	2328	203287955	-	BRE_517	-	p-512 protein
485	 31.52	+1	543261..544808	+	515	203287956	pheS	BRE_518	-	phenylalanyl-tRNA synthetase alpha chain
486	 28.20	0	544801..546495	+	564	203287957	pheT	BRE_519	-	phenylalanyl-tRNA synthetase beta chain
487	 31.19	0	546584..547561	+	325	203287958	trxB	BRE_520	-	thioredoxin reductase
488	 25.85	0	547590..548324	-	244	203287959	yacO	BRE_521	-	rRNA methylase
489	 30.34	0	548326..549426	-	366	203287960	dnaJ-1	BRE_522	-	heat shock protein
490	 34.18	+1	549426..551324	-	632	203287961	dnaK-2	BRE_523	-	heat shock protein 70
491	 25.87	0	551368..551916	-	182	203287962	grpE	BRE_524	-	chaperone protein GrpE
492	 28.81	0	552280..553848	+	522	203287963	-	BRE_525	-	NH(3)-dependent NAD synthetase
493	 26.04	0	553835..555424	+	529	203287964	-	BRE_526	-	Response regulator receiver (CheY) modulated Serine phosphatase
494	 23.25	-1	555576..556031	-	151	203287965	-	BRE_527	-	hypothetical protein
495	 23.44	-1	556139..557947	+	602	203287966	-	BRE_528	-	hypothetical protein
496	 26.54	0	557937..558731	+	264	203287967	-	BRE_529	-	pantothenate kinase
497	 24.43	0	558709..559539	-	276	203287968	-	BRE_530	-	hypothetical protein
498	 28.10	0	559520..560131	-	203	203287969	-	BRE_531	-	hypothetical protein
499	 23.02	-1	560134..561423	-	429	203287970	-	BRE_532	-	hypothetical protein
500	 28.72	0	561584..562342	+	252	203287971	phnP	BRE_533	-	phnP protein
501	 28.63	0	562354..563118	+	254	203287972	exoA	BRE_534	-	exodeoxyribonuclease III
502	 25.07	0	563142..563903	+	253	203287973	-	BRE_535	-	hypothetical protein
503	 26.65	0	563900..566725	+	941	203287974	-	BRE_536	-	zinc protease, putative; lipoprotein
504	 22.69	-1	566748..568184	-	478	203287975	-	BRE_537	-	hypothetical protein
505	 26.70	0	568609..569256	-	215	203287976	-	BRE_541	-	TPR domain protein
506	 29.06	0	569253..569603	-	116	203287977	-	BRE_542	-	hypothetical protein
507	 28.74	0	569692..570387	-	231	203287978	-	BRE_543	-	hypothetical protein
508	 32.90	+1	570400..572481	-	693	203287979	fus-1	BRE_544	-	translation elongation factor G
509	 27.57	0	573018..573260	+	80	203287980	-	BRE_545	-	hypothetical protein
510	 30.29	0	573463..574548	+	361	203287981	-	BRE_546	-	hypothetical protein
511	 25.72	0	574652..575203	+	183	203287982	-	BRE_547	-	hypothetical protein
512	 29.60	0	575258..575926	+	222	203287983	-	BRE_548	-	hypothetical protein
513	 30.38	0	576084..577304	+	406	203287984	prs	BRE_549	-	phosphoribosyl pyrophosphate synthetase
514	 24.69	0	577309..578673	+	454	203287985	xylB	BRE_550	-	xylulokinase
515	 24.96	0	578656..579360	-	234	203287986	-	BRE_551	-	hypothetical protein
516	 21.78	-1	579360..579956	-	198	203287987	coaE	BRE_552	-	dephospho-CoA kinase
517	 26.25	0	579935..582703	-	922	203287988	polA	BRE_553	-	DNA polymerase I
518	 19.75	-2	582700..583104	-	134	203287989	-	BRE_554	-	hypothetical protein
519	 25.53	0	583094..583516	-	140	203287990	flaJ	BRE_555	-	flagellar protein
520	 28.22	0	583527..583937	-	136	203287991	cheY-1	BRE_556	-	chemotaxis response regulator
521	 27.71	0	584100..586109	+	669	203287992	lig	BRE_557	-	DNA ligase
522	 22.72	-1	586112..588400	-	762	203287993	-	BRE_558	-	hypothetical protein
523	 23.54	-1	588685..590553	+	622	203287994	-	BRE_559	-	hypothetical protein
524	 27.71	0	590540..591001	+	153	203287995	-	BRE_560	-	hypothetical protein
525	 21.25	-1	590998..591858	+	286	203287996	-	BRE_561	-	hypothetical protein
526	 33.72	+1	592018..592278	+	86	203287997	ptsH-2	BRE_562	-	phosphocarrier protein HPr
527	 30.86	0	592279..594015	+	578	203287998	ptsI	BRE_563	-	phosphoenolpyruvate-protein phosphatase
528	 34.21	+1	594019..594588	+	189	203287999	crr	BRE_564	-	PTS system, glucose-specific IIA component
529	 26.30	0	594625..596472	-	615	203288000	htpG	BRE_565	-	heat shock protein 90
530	 28.89	0	596587..597981	+	464	203288001	gnd	BRE_566	-	phosphogluconate dehydrogenase, decarboxylating (gnd)
531	 25.88	0	597996..598532	-	178	203288002	-	BRE_567	-	hypothetical protein
532	 25.43	0	598656..599174	-	172	203288003	-	BRE_568	-	hypothetical protein
533	 29.80	0	599389..599898	-	169	203288004	-	BRE_569	-	hypothetical protein
534	 28.84	0	600237..600770	+	177	203288005	cheW-2	BRE_570	-	purine-binding chemotaxis protein
535	 23.36	-1	600776..601096	+	106	203288006	-	BRE_571	-	hypothetical protein
536	 31.14	0	601120..603261	+	713	203288007	cheA-1	BRE_572	-	chemotaxis histidine kinase
537	 28.82	0	603323..604474	+	383	203288008	cheB-2	BRE_573	-	protein-glutamate methylesterase
538	 25.03	0	604453..606246	+	597	203288009	-	BRE_574	-	hypothetical protein
539	 35.20	+2	606283..606657	+	124	203288010	cheY-2	BRE_575	-	chemotaxis response regulator
540	 29.17	0	606700..608043	+	447	203288011	-	BRE_576	-	hypothetical protein
541	 26.81	0	608142..608831	-	229	203288012	smbA	BRE_578	-	uridylate kinase
542	 25.63	0	609048..610112	+	354	203288013	lgtD	BRE_579	-	glycosyl transferase
543	 24.57	0	610174..610995	+	273	203288014	-	BRE_580	-	ABC transporter, ATP-binding protein
544	 22.11	-1	610988..611869	+	293	203288015	-	BRE_581	-	hypothetical protein
27.65	MEAN

3.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.