IslandPathversion 1.0

IslandPath Analysis: Borrelia recurrentis A1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 27.65 STD DEV: 3.61
Borrelia recurrentis A1, complete genome - 1..930981
800 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
355	 29.03	0	408252..408809	+	185	203287826	-	BRE_376	-	autoinducer-2 production protein
356	 26.62	0	408938..409369	-	143	203287827	pkcI	BRE_377	-	protein kinase C1 inhibitor
357	 29.74	0	409405..410766	-	453	203287828	mgtE	BRE_378	-	Mg2 transport protein
358	 28.00	0	410821..412245	-	474	203287829	-	BRE_379	-	hypothetical protein
359	 28.73	0	412519..413538	-	339	203287830	bmpA-1	BRE_380	-	basic membrane protein A
360	 30.81	0	413594..414664	-	356	203287831	bmpC	BRE_381	-	basic membrane protein C; lipoprotein
361	 30.32	0	414823..415851	-	342	203287832	bmpA-2	BRE_382	-	basic membrane protein A; lipoprotein
362	 31.04	0	415875..416921	-	348	203287833	bmpD	BRE_383	-	basic membrane protein D
363	 33.54	+1	416985..417458	-	157	203287834	rpsG	BRE_384	-	30S ribosomal protein S7
364	 37.60	+2	417473..417847	-	124	203287835	rpsL	BRE_385	-	30S ribosomal protein S12
365	 32.56	+1	417910..422043	-	1377	203287836	rpoC	BRE_386	-	DNA-directed RNA polymerase beta' chain
366	 33.02	+1	422058..425525	-	1155	203287837	rpoB	BRE_387	-	DNA-directed RNA polymerase beta chain
367	 38.98	+2	425611..425982	-	123	203287838	rplL	BRE_388	-	50S ribosomal protein L7/L12
368	 29.24	0	426056..426544	-	162	203287839	rplJ	BRE_389	-	50S ribosomal protein L10
369	 30.81	0	426555..427229	-	224	203287840	rplA	BRE_390	-	50S ribosomal protein L1
370	 35.63	+2	427229..427663	-	144	203287841	rplK	BRE_391	-	50S ribosomal protein L11
371	 32.25	+1	427719..428273	-	184	203287842	nusG	BRE_392	-	transcription antitermination factor
372	 25.15	0	428284..428454	-	56	203287843	secE	BRE_393	-	preprotein translocase SecE subunit
373	 32.22	+1	428567..428746	-	59	203287844	rpmG	BRE_395	-	50S ribosomal protein L33
374	 26.41	0	428944..429795	-	283	203287845	-	BRE_397	-	hypothetical protein
375	 25.54	0	429806..430870	-	354	203287846	-	BRE_398	-	hypothetical protein
376	 23.38	-1	430853..432208	+	451	203287847	-	BRE_399	-	putative lipoprotein
377	 21.31	-1	432221..432877	+	218	203287848	-	BRE_400	-	hypothetical protein
378	 23.76	-1	433027..434217	+	396	203287849	-	BRE_401	-	glutamate transporter, putative
379	 30.83	0	434244..435719	-	491	203287850	proS	BRE_402	-	prolyl-tRNA synthetase
380	 29.97	0	436493..437116	+	207	203287851	-	BRE_403	-	hypothetical protein
381	 29.82	0	437140..437964	+	274	203287852	-	BRE_404	-	hypothetical protein
382	 28.25	0	438015..439136	-	373	203287853	manA	BRE_405	-	mannose-6-phosphate isomerase
383	 34.59	+1	439249..441000	-	583	203287854	fruA-1	BRE_406	-	PTS system, fructose-specific IIABC component
384	 22.32	-1	441125..441805	+	226	203287855	-	BRE_407	-	uncharacterized conserved protein in borrelia
385	 26.10	0	441802..442686	+	294	203287856	nucA	BRE_408	-	endonuclease precursor
386	 22.22	-1	442683..443447	+	254	203287857	-	BRE_409	-	hypothetical protein
387	 25.96	0	443467..444063	-	198	203287858	-	BRE_410	-	hypothetical protein
388	 29.80	0	444063..445082	-	339	203287859	-	BRE_411	-	peptidyl-prolyl cis-trans isomerase
389	 25.69	0	445230..446093	+	287	203287860	cheR-2	BRE_412	-	chemotaxis protein methyltransferase
390	 26.96	0	446129..447289	+	386	203287861	cheB-1	BRE_413	-	protein-glutamate methylesterase
391	 29.03	0	447313..448521	+	402	203287862	traB	BRE_414	-	pheromone shutdown protein
392	 27.47	0	448561..449208	+	215	203287863	adk	BRE_415	-	adenylate kinase
393	 30.27	0	449303..450379	+	358	203287864	-	BRE_416	-	hypothetical protein
394	 27.97	0	450395..451327	-	310	203287865	rrp-1	BRE_417	-	response regulatory protein
395	 25.39	0	451324..455769	-	1481	203287866	-	BRE_418	-	sensory transduction histidine kinase
396	 27.03	0	459041..459928	-	295	203287867	-	BRE_421	-	hydrolase
397	 26.10	0	460014..460538	+	174	203287868	hpt	BRE_422	-	hypoxanthine phosphoribosyltransferase
398	 28.58	0	460548..461831	+	427	203287869	purA	BRE_423	-	adenylosuccinate synthase
399	 28.32	0	461816..463210	+	464	203287870	purB	BRE_424	-	adenylosuccinate lyase
400	 27.07	0	463216..463806	-	196	203287871	mag	BRE_425	-	3-methyladenine DNA glycosylase
401	 29.48	0	466526..467200	-	224	203287872	-	BRE_429	-	hypothetical protein
402	 27.04	0	467457..467774	+	105	203287873	-	BRE_430	-	hypothetical protein
403	 28.46	0	467781..468170	-	129	203287874	-	BRE_431	-	hypothetical protein
404	 23.66	-1	468284..468862	+	192	203287875	pepQ	BRE_432	-	proline dipeptidase (PepQ)
405	 26.18	0	469469..470251	-	260	203287876	spo0J	BRE_434	-	stage 0 sporulation protein J
406	 31.78	+1	470388..472835	-	815	203287877	gyrA	BRE_435	-	DNA gyrase, subunit A
407	 31.67	+1	472832..474751	-	639	203287878	gyrB	BRE_436	-	DNA gyrase, subunit B
408	 26.32	0	474985..476439	+	484	203287879	dnaA	BRE_437	-	chromosomal replication initiator protein
409	 28.51	0	476703..477863	+	386	203287880	dnaN	BRE_438	-	DNA polymerase III, subunit beta
410	 25.94	0	477884..478951	+	355	203287881	recF	BRE_439	-	DNA replication and repair protein RecF
411	 23.33	-1	478932..479231	+	99	203287882	-	BRE_440	-	hypothetical protein
412	 32.05	+1	479326..479481	+	51	203287883	rpmH	BRE_441	-	50S ribosomal protein L34
413	 26.09	0	479462..479806	+	114	203287884	rnpA	BRE_442	-	ribonuclease P protein component
414	 26.43	0	479803..481440	+	545	203287885	-	BRE_443	-	60 kDa inner-membrane protein
415	 27.94	0	481437..482159	+	240	203287886	jag	BRE_444	-	spoIIIJ-associated protein
416	 28.71	0	482216..483274	+	352	203287887	-	BRE_445	-	nucleotide sugar epimerase
417	 32.69	+1	483413..484492	+	359	203287888	fba	BRE_446	-	fructose-bisphosphate aldolase
418	 25.93	0	484724..485155	+	143	203287889	-	BRE_447	-	heat shock protein, HSP20 family
419	 27.17	0	485200..486951	-	583	203287890	aspS	BRE_448	-	aspartyl-tRNA synthetase
420	 27.11	0	486955..489075	-	706	203287891	napA_1	BRE_449	-	Na+ /H+ antiporter
421	 28.32	0	489072..489350	-	92	203287892	ptsH-1	BRE_450	-	phosphocarrier protein HPr
422	 25.32	0	489365..489676	-	103	203287893	-	BRE_451	-	hypothetical protein
423	 24.18	0	489651..490907	-	418	203287894	ntrA	BRE_452	-	RNA polymerase sigma-54 factor
424	 26.40	0	490910..491443	-	177	203287895	-	BRE_453	-	chromate transport protein, putative
425	 22.44	-1	491409..492023	-	204	203287896	-	BRE_454	-	Chromate transport protein, putative
426	 26.65	0	492147..493088	+	313	203287897	-	BRE_455	-	hypothetical protein
427	 25.79	0	493072..494238	-	388	203287898	-	BRE_456	-	lipopolysaccharide biosynthesis-related protein
428	 24.29	0	494306..495289	+	327	203287899	-	BRE_457	-	DNA polymerase III delta subunit
429	 24.71	0	495293..497101	-	602	203287900	uvrC	BRE_458	-	excinuclease ABC, subunit C
430	 28.19	0	497212..498729	+	505	203287901	-	BRE_459	-	hypothetical protein
431	 25.42	0	498665..500029	+	454	203287902	-	BRE_460	-	hypothetical protein
432	 25.00	0	500352..501083	-	243	203287903	-	BRE_463	-	putative lipoprotein
433	 29.44	0	501628..503295	+	555	203287904	dnaX	BRE_466	-	DNA polymerase III, gamma and tau subunits
434	 25.00	0	503298..503597	+	99	203287905	-	BRE_467	-	hypothetical protein
435	 29.40	0	503601..504185	+	194	203287906	recR	BRE_468	-	recombination protein RecR
436	 31.10	0	504437..505018	+	193	203287907	ndk	BRE_469	-	nucleoside-diphosphate kinase
437	 23.88	-1	505022..505846	+	274	203287908	-	BRE_470	-	putative adenine-specific DNA methyltransferase
438	 27.19	0	506060..506596	+	178	203287909	-	BRE_471	-	hypothetical protein
439	 28.88	0	506593..507288	+	231	203287910	-	BRE_472	-	hypothetical protein
440	 32.73	+1	507224..508057	+	277	203287911	-	BRE_473	-	ABC transporter, ATP-binding protein
441	 24.49	0	508054..508743	+	229	203287912	-	BRE_474	-	hypothetical protein
442	 28.38	0	508745..509491	+	248	203287913	-	BRE_475	-	hypothetical protein
443	 25.73	0	509501..510013	+	170	203287914	lsp	BRE_476	-	signal peptidase II
444	 17.78	-2	510010..510234	+	74	203287915	-	BRE_477	-	hypothetical protein
445	 28.94	0	510249..511067	+	272	203287916	-	BRE_478	-	hypothetical protein
446	 33.96	+1	511126..512406	+	426	203287917	murA	BRE_479	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
447	 28.62	0	512643..514001	+	452	203287918	-	BRE_480	-	hypothetical protein
448	 21.91	-1	514148..514471	-	107	203287919	-	BRE_481	-	hypothetical protein
449	 35.70	+2	514819..516003	+	394	203287920	tuf	BRE_482	-	translation elongation factor TU
450	 34.62	+1	516049..516360	+	103	203287921	rpsJ	BRE_483	-	30S ribosomal protein S10
451	 35.56	+2	516394..517023	+	209	203287922	rplC	BRE_484	-	50S ribosomal protein L3
452	 31.75	+1	517025..517654	+	209	203287923	rplD	BRE_485	-	50S ribosomal protein L4
453	 28.28	0	517676..517972	+	98	203287924	rplW	BRE_486	-	50S ribosomal protein L23
454	 38.13	+2	517991..518824	+	277	203287925	rplB	BRE_487	-	50S ribosomal protein L2
27.65	MEAN

3.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.