IslandPathversion 1.0

IslandPath Analysis: Borrelia recurrentis A1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 27.65 STD DEV: 3.61
Borrelia recurrentis A1, complete genome - 1..930981
800 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
313	 25.50	0	357220..358113	-	297	203287784	-	BRE_332	-	glycerol-3-phosphate O-acyltransferase
314	 28.67	0	360242..361915	+	557	203287785	oppA-2	BRE_334	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
315	 30.08	0	362280..363200	+	306	203287786	oppB-1	BRE_335	-	oligopeptide ABC transporter, permease protein
316	 30.02	0	363184..364269	+	361	203287787	oppC-1	BRE_336	-	oligopeptide transport system permease protein
317	 28.98	0	364280..365152	+	290	203287788	oppD	BRE_337	-	oligopeptide transport system ATP-binding protein
318	 29.17	0	365153..366136	+	327	203287789	oppF	BRE_338	-	oligopeptide transport system ATP-binding protein
319	 26.89	0	366262..367068	-	268	203287790	-	BRE_339	-	P26
320	 33.26	+1	367146..368444	+	432	203287791	eno	BRE_340	-	enolase
321	 34.06	+1	368515..368925	-	136	203287792	rpsI	BRE_341	-	30S ribosomal protein S9
322	 31.78	+1	368936..369385	-	149	203287793	rplM	BRE_342	-	50S ribosomal protein L13
323	 26.08	0	369465..370250	-	261	203287794	-	BRE_343	-	hypothetical protein
324	 30.04	0	370243..371700	-	485	203287795	gatB	BRE_344	-	Glu-tRNA(Gln) amidotransferase, subunit B
325	 29.46	0	371690..373135	-	481	203287796	gatA	BRE_345	-	glu-tRNA amidotransferase, subunit A
326	 24.28	0	373147..373422	-	91	203287797	gatC	BRE_346	-	Glu-tRNA(Gln) amidotransferase, subunit C
327	 26.51	0	373432..375528	-	698	203287798	uvrD	BRE_347	-	DNA helicase
328	 26.85	0	375525..376727	-	400	203287799	-	BRE_348	-	hypothetical protein
329	 30.97	0	376739..377416	-	225	203287800	-	BRE_349	-	hypothetical protein
330	 23.48	-1	377556..378965	+	469	203287801	-	BRE_350	-	fibronectin/fibrinogen-binding protein, putative
331	 30.68	0	379079..380512	+	477	203287802	pyk	BRE_351	-	pyruvate kinase
332	 28.32	0	381286..381564	-	92	203287803	rpmB	BRE_352	-	50S ribosomal protein L28
333	 25.33	0	381574..383172	-	532	203287804	-	BRE_353	-	hypothetical protein
334	 19.53	-2	383256..384371	+	371	203287805	-	BRE_354	-	putative lipoprotein
335	 23.53	-1	384366..386180	-	604	203287806	-	BRE_355	-	hypothetical protein
336	 22.54	-1	386186..387130	-	314	203287807	-	BRE_356	-	hypothetical protein
337	 29.90	0	387157..387651	-	164	203287808	-	BRE_357	-	transcription factor, putative
338	 22.73	-1	387696..388289	-	197	203287809	-	BRE_358	-	hypothetical protein
339	 26.61	0	388282..389010	-	242	203287810	-	BRE_359	-	uncharacterized protein conserved
340	 29.63	0	389014..390498	-	494	203287811	ctp	BRE_360	-	carboxyl-terminal protease
341	 24.31	0	390541..390972	+	143	203287812	-	BRE_361	-	hypothetical protein
342	 25.66	0	390976..392109	+	377	203287813	ylxH-2	BRE_362	-	ATP-binding protein
343	 29.45	0	392120..393073	+	317	203287814	lgt	BRE_363	-	prolipoprotein diacylglyceryl transferase
344	 23.42	-1	393131..395128	+	665	203287815	-	BRE_364	-	periplasmic protein
345	 32.53	+1	395261..396634	+	457	203287816	yscI	BRE_365	-	aminopeptidase I
346	 24.21	0	396585..396902	+	105	203287817	-	BRE_366	-	hypothetical protein
347	 28.96	0	396923..397975	-	350	203287818	gpsA	BRE_367	-	glycerol-3-phosphate dehydrogenase, NAD(P)
348	 29.89	0	400301..401521	-	406	203287819	tyrS	BRE_369	-	tyrosyl-tRNA synthetase
349	 32.36	+1	401526..402863	-	445	203287820	glyS	BRE_370	-	glycyl-tRNA synthetase
350	 30.37	0	402878..404398	-	506	203287821	gltX	BRE_371	-	glutamyl-tRNA synthetase
351	 19.67	-2	404367..405149	-	260	203287822	-	BRE_372	-	hypothetical protein
352	 25.92	0	405281..406426	+	381	203287823	-	BRE_373	-	hypothetical protein
353	 28.85	0	406440..407153	+	237	203287824	pfs-1	BRE_374	-	5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine
354	 30.43	0	407170..408339	+	389	203287825	metK	BRE_375	-	S-adenosylmethionine synthetase
355	 29.03	0	408252..408809	+	185	203287826	-	BRE_376	-	autoinducer-2 production protein
356	 26.62	0	408938..409369	-	143	203287827	pkcI	BRE_377	-	protein kinase C1 inhibitor
357	 29.74	0	409405..410766	-	453	203287828	mgtE	BRE_378	-	Mg2 transport protein
358	 28.00	0	410821..412245	-	474	203287829	-	BRE_379	-	hypothetical protein
359	 28.73	0	412519..413538	-	339	203287830	bmpA-1	BRE_380	-	basic membrane protein A
360	 30.81	0	413594..414664	-	356	203287831	bmpC	BRE_381	-	basic membrane protein C; lipoprotein
361	 30.32	0	414823..415851	-	342	203287832	bmpA-2	BRE_382	-	basic membrane protein A; lipoprotein
362	 31.04	0	415875..416921	-	348	203287833	bmpD	BRE_383	-	basic membrane protein D
363	 33.54	+1	416985..417458	-	157	203287834	rpsG	BRE_384	-	30S ribosomal protein S7
364	 37.60	+2	417473..417847	-	124	203287835	rpsL	BRE_385	-	30S ribosomal protein S12
365	 32.56	+1	417910..422043	-	1377	203287836	rpoC	BRE_386	-	DNA-directed RNA polymerase beta' chain
366	 33.02	+1	422058..425525	-	1155	203287837	rpoB	BRE_387	-	DNA-directed RNA polymerase beta chain
367	 38.98	+2	425611..425982	-	123	203287838	rplL	BRE_388	-	50S ribosomal protein L7/L12
368	 29.24	0	426056..426544	-	162	203287839	rplJ	BRE_389	-	50S ribosomal protein L10
369	 30.81	0	426555..427229	-	224	203287840	rplA	BRE_390	-	50S ribosomal protein L1
370	 35.63	+2	427229..427663	-	144	203287841	rplK	BRE_391	-	50S ribosomal protein L11
371	 32.25	+1	427719..428273	-	184	203287842	nusG	BRE_392	-	transcription antitermination factor
372	 25.15	0	428284..428454	-	56	203287843	secE	BRE_393	-	preprotein translocase SecE subunit
373	 32.22	+1	428567..428746	-	59	203287844	rpmG	BRE_395	-	50S ribosomal protein L33
374	 26.41	0	428944..429795	-	283	203287845	-	BRE_397	-	hypothetical protein
375	 25.54	0	429806..430870	-	354	203287846	-	BRE_398	-	hypothetical protein
376	 23.38	-1	430853..432208	+	451	203287847	-	BRE_399	-	putative lipoprotein
377	 21.31	-1	432221..432877	+	218	203287848	-	BRE_400	-	hypothetical protein
378	 23.76	-1	433027..434217	+	396	203287849	-	BRE_401	-	glutamate transporter, putative
379	 30.83	0	434244..435719	-	491	203287850	proS	BRE_402	-	prolyl-tRNA synthetase
380	 29.97	0	436493..437116	+	207	203287851	-	BRE_403	-	hypothetical protein
381	 29.82	0	437140..437964	+	274	203287852	-	BRE_404	-	hypothetical protein
382	 28.25	0	438015..439136	-	373	203287853	manA	BRE_405	-	mannose-6-phosphate isomerase
383	 34.59	+1	439249..441000	-	583	203287854	fruA-1	BRE_406	-	PTS system, fructose-specific IIABC component
384	 22.32	-1	441125..441805	+	226	203287855	-	BRE_407	-	uncharacterized conserved protein in borrelia
385	 26.10	0	441802..442686	+	294	203287856	nucA	BRE_408	-	endonuclease precursor
386	 22.22	-1	442683..443447	+	254	203287857	-	BRE_409	-	hypothetical protein
387	 25.96	0	443467..444063	-	198	203287858	-	BRE_410	-	hypothetical protein
388	 29.80	0	444063..445082	-	339	203287859	-	BRE_411	-	peptidyl-prolyl cis-trans isomerase
389	 25.69	0	445230..446093	+	287	203287860	cheR-2	BRE_412	-	chemotaxis protein methyltransferase
390	 26.96	0	446129..447289	+	386	203287861	cheB-1	BRE_413	-	protein-glutamate methylesterase
391	 29.03	0	447313..448521	+	402	203287862	traB	BRE_414	-	pheromone shutdown protein
392	 27.47	0	448561..449208	+	215	203287863	adk	BRE_415	-	adenylate kinase
393	 30.27	0	449303..450379	+	358	203287864	-	BRE_416	-	hypothetical protein
394	 27.97	0	450395..451327	-	310	203287865	rrp-1	BRE_417	-	response regulatory protein
395	 25.39	0	451324..455769	-	1481	203287866	-	BRE_418	-	sensory transduction histidine kinase
396	 27.03	0	459041..459928	-	295	203287867	-	BRE_421	-	hydrolase
397	 26.10	0	460014..460538	+	174	203287868	hpt	BRE_422	-	hypoxanthine phosphoribosyltransferase
398	 28.58	0	460548..461831	+	427	203287869	purA	BRE_423	-	adenylosuccinate synthase
399	 28.32	0	461816..463210	+	464	203287870	purB	BRE_424	-	adenylosuccinate lyase
400	 27.07	0	463216..463806	-	196	203287871	mag	BRE_425	-	3-methyladenine DNA glycosylase
401	 29.48	0	466526..467200	-	224	203287872	-	BRE_429	-	hypothetical protein
402	 27.04	0	467457..467774	+	105	203287873	-	BRE_430	-	hypothetical protein
403	 28.46	0	467781..468170	-	129	203287874	-	BRE_431	-	hypothetical protein
404	 23.66	-1	468284..468862	+	192	203287875	pepQ	BRE_432	-	proline dipeptidase (PepQ)
405	 26.18	0	469469..470251	-	260	203287876	spo0J	BRE_434	-	stage 0 sporulation protein J
406	 31.78	+1	470388..472835	-	815	203287877	gyrA	BRE_435	-	DNA gyrase, subunit A
407	 31.67	+1	472832..474751	-	639	203287878	gyrB	BRE_436	-	DNA gyrase, subunit B
408	 26.32	0	474985..476439	+	484	203287879	dnaA	BRE_437	-	chromosomal replication initiator protein
409	 28.51	0	476703..477863	+	386	203287880	dnaN	BRE_438	-	DNA polymerase III, subunit beta
410	 25.94	0	477884..478951	+	355	203287881	recF	BRE_439	-	DNA replication and repair protein RecF
411	 23.33	-1	478932..479231	+	99	203287882	-	BRE_440	-	hypothetical protein
412	 32.05	+1	479326..479481	+	51	203287883	rpmH	BRE_441	-	50S ribosomal protein L34
27.65	MEAN

3.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.