IslandPathversion 1.0

IslandPath Analysis: Borrelia recurrentis A1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 27.65 STD DEV: 3.61
Borrelia recurrentis A1, complete genome - 1..930981
800 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
278	 29.34	0	320697..321623	-	308	203287749	fliH	BRE_296	-	flagellar assembly protein
279	 32.46	+1	321632..322666	-	344	203287750	fliG-2	BRE_297	-	flagellar motor switch protein
280	 31.17	0	322682..324388	-	568	203287751	fliF	BRE_298	-	flagellar M-ring protein
281	 26.97	0	324402..324731	-	109	203287752	fliE	BRE_299	-	flagellar hook-basal body complex protein
282	 35.05	+2	324747..325211	-	154	203287753	flgC	BRE_300	-	flagellar basal-body rod protein
283	 28.19	0	325234..325641	-	135	203287754	flgB	BRE_301	-	flagellar basal-body rod protein
284	 29.87	0	325674..327029	-	451	203287755	hslU	BRE_302	-	heat shock protein
285	 34.99	+2	327026..327568	-	180	203287756	hslV	BRE_303	-	heat shock protein
286	 28.12	0	328531..329220	-	229	203287757	-	BRE_305	-	putative lipoprotein
287	 35.51	+2	329221..330417	-	398	203287758	ftsZ	BRE_306	-	cell division protein
288	 34.78	+1	330438..331679	-	413	203287759	ftsA	BRE_307	-	cell division protein
289	 22.58	-1	331679..332422	-	247	203287760	divIB	BRE_308	-	cell division protein
290	 27.45	0	332454..333557	-	367	203287761	ftsW	BRE_309	-	cell division protein
291	 28.69	0	333568..334623	-	351	203287762	mraY	BRE_310	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
292	 26.32	0	334647..336044	-	465	203287763	murF	BRE_311	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase
293	 19.50	-2	336060..336341	-	93	203287764	-	BRE_312	-	hypothetical protein
294	 28.52	0	336334..337227	-	297	203287765	-	BRE_313	-	S-adenosyl-methyltransferase
295	 19.98	-2	337220..338050	-	276	203287766	-	BRE_314	-	hypothetical protein
296	 22.50	-1	338054..339142	-	362	203287767	-	BRE_315	-	hypothetical protein
297	 25.03	0	339153..339911	-	252	203287768	-	BRE_316	-	hypothetical protein
298	 22.81	-1	339943..341529	-	528	203287769	recN	BRE_317	-	ATPase involved in DNA repair
299	 26.67	0	341556..342455	-	299	203287770	-	BRE_318	-	probable inorganic polyphosphate/ATP-NAD kinase
300	 24.43	0	342388..342915	-	175	203287771	cheW-1	BRE_319	-	purine-binding chemotaxis protein
301	 27.84	0	342956..343537	-	193	203287772	ftsJ	BRE_320	-	ribosomal RNA methyltransferase
302	 25.69	0	343590..344636	+	348	203287773	ispB	BRE_321	-	octaprenyl-diphosphate synthase
303	 21.23	-1	344633..345301	+	222	203287774	-	BRE_322	-	hypothetical protein
304	 23.92	-1	345298..346104	-	268	203287775	-	BRE_323	-	hypothetical protein
305	 25.51	0	346105..347037	-	310	203287776	-	BRE_324	-	hypothetical protein
306	 25.45	0	347034..348491	-	485	203287777	mglA-1	BRE_325	-	methylgalactoside ABC transporter, ATP-binding protein
307	 27.47	0	348495..349568	-	357	203287778	tpn38b	BRE_326	-	exported protein
308	 24.36	0	349968..351059	-	363	203287779	-	BRE_327	-	hypothetical protein
309	 29.14	0	351560..352681	+	373	203287780	-	BRE_328	-	putative lipoprotein
310	 26.72	0	352775..353137	+	120	203287781	-	BRE_329	-	putative lipoprotein
311	 27.15	0	353171..354286	-	371	203287782	-	BRE_330	-	hypothetical protein
312	 27.14	0	354350..357205	-	951	203287783	-	BRE_331	-	hypothetical protein
313	 25.50	0	357220..358113	-	297	203287784	-	BRE_332	-	glycerol-3-phosphate O-acyltransferase
314	 28.67	0	360242..361915	+	557	203287785	oppA-2	BRE_334	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
315	 30.08	0	362280..363200	+	306	203287786	oppB-1	BRE_335	-	oligopeptide ABC transporter, permease protein
316	 30.02	0	363184..364269	+	361	203287787	oppC-1	BRE_336	-	oligopeptide transport system permease protein
317	 28.98	0	364280..365152	+	290	203287788	oppD	BRE_337	-	oligopeptide transport system ATP-binding protein
318	 29.17	0	365153..366136	+	327	203287789	oppF	BRE_338	-	oligopeptide transport system ATP-binding protein
319	 26.89	0	366262..367068	-	268	203287790	-	BRE_339	-	P26
320	 33.26	+1	367146..368444	+	432	203287791	eno	BRE_340	-	enolase
321	 34.06	+1	368515..368925	-	136	203287792	rpsI	BRE_341	-	30S ribosomal protein S9
322	 31.78	+1	368936..369385	-	149	203287793	rplM	BRE_342	-	50S ribosomal protein L13
323	 26.08	0	369465..370250	-	261	203287794	-	BRE_343	-	hypothetical protein
324	 30.04	0	370243..371700	-	485	203287795	gatB	BRE_344	-	Glu-tRNA(Gln) amidotransferase, subunit B
325	 29.46	0	371690..373135	-	481	203287796	gatA	BRE_345	-	glu-tRNA amidotransferase, subunit A
326	 24.28	0	373147..373422	-	91	203287797	gatC	BRE_346	-	Glu-tRNA(Gln) amidotransferase, subunit C
327	 26.51	0	373432..375528	-	698	203287798	uvrD	BRE_347	-	DNA helicase
328	 26.85	0	375525..376727	-	400	203287799	-	BRE_348	-	hypothetical protein
329	 30.97	0	376739..377416	-	225	203287800	-	BRE_349	-	hypothetical protein
330	 23.48	-1	377556..378965	+	469	203287801	-	BRE_350	-	fibronectin/fibrinogen-binding protein, putative
331	 30.68	0	379079..380512	+	477	203287802	pyk	BRE_351	-	pyruvate kinase
332	 28.32	0	381286..381564	-	92	203287803	rpmB	BRE_352	-	50S ribosomal protein L28
333	 25.33	0	381574..383172	-	532	203287804	-	BRE_353	-	hypothetical protein
334	 19.53	-2	383256..384371	+	371	203287805	-	BRE_354	-	putative lipoprotein
335	 23.53	-1	384366..386180	-	604	203287806	-	BRE_355	-	hypothetical protein
336	 22.54	-1	386186..387130	-	314	203287807	-	BRE_356	-	hypothetical protein
337	 29.90	0	387157..387651	-	164	203287808	-	BRE_357	-	transcription factor, putative
338	 22.73	-1	387696..388289	-	197	203287809	-	BRE_358	-	hypothetical protein
339	 26.61	0	388282..389010	-	242	203287810	-	BRE_359	-	uncharacterized protein conserved
340	 29.63	0	389014..390498	-	494	203287811	ctp	BRE_360	-	carboxyl-terminal protease
341	 24.31	0	390541..390972	+	143	203287812	-	BRE_361	-	hypothetical protein
342	 25.66	0	390976..392109	+	377	203287813	ylxH-2	BRE_362	-	ATP-binding protein
343	 29.45	0	392120..393073	+	317	203287814	lgt	BRE_363	-	prolipoprotein diacylglyceryl transferase
344	 23.42	-1	393131..395128	+	665	203287815	-	BRE_364	-	periplasmic protein
345	 32.53	+1	395261..396634	+	457	203287816	yscI	BRE_365	-	aminopeptidase I
346	 24.21	0	396585..396902	+	105	203287817	-	BRE_366	-	hypothetical protein
347	 28.96	0	396923..397975	-	350	203287818	gpsA	BRE_367	-	glycerol-3-phosphate dehydrogenase, NAD(P)
348	 29.89	0	400301..401521	-	406	203287819	tyrS	BRE_369	-	tyrosyl-tRNA synthetase
349	 32.36	+1	401526..402863	-	445	203287820	glyS	BRE_370	-	glycyl-tRNA synthetase
350	 30.37	0	402878..404398	-	506	203287821	gltX	BRE_371	-	glutamyl-tRNA synthetase
351	 19.67	-2	404367..405149	-	260	203287822	-	BRE_372	-	hypothetical protein
352	 25.92	0	405281..406426	+	381	203287823	-	BRE_373	-	hypothetical protein
353	 28.85	0	406440..407153	+	237	203287824	pfs-1	BRE_374	-	5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine
354	 30.43	0	407170..408339	+	389	203287825	metK	BRE_375	-	S-adenosylmethionine synthetase
355	 29.03	0	408252..408809	+	185	203287826	-	BRE_376	-	autoinducer-2 production protein
356	 26.62	0	408938..409369	-	143	203287827	pkcI	BRE_377	-	protein kinase C1 inhibitor
357	 29.74	0	409405..410766	-	453	203287828	mgtE	BRE_378	-	Mg2 transport protein
358	 28.00	0	410821..412245	-	474	203287829	-	BRE_379	-	hypothetical protein
359	 28.73	0	412519..413538	-	339	203287830	bmpA-1	BRE_380	-	basic membrane protein A
360	 30.81	0	413594..414664	-	356	203287831	bmpC	BRE_381	-	basic membrane protein C; lipoprotein
361	 30.32	0	414823..415851	-	342	203287832	bmpA-2	BRE_382	-	basic membrane protein A; lipoprotein
362	 31.04	0	415875..416921	-	348	203287833	bmpD	BRE_383	-	basic membrane protein D
363	 33.54	+1	416985..417458	-	157	203287834	rpsG	BRE_384	-	30S ribosomal protein S7
364	 37.60	+2	417473..417847	-	124	203287835	rpsL	BRE_385	-	30S ribosomal protein S12
365	 32.56	+1	417910..422043	-	1377	203287836	rpoC	BRE_386	-	DNA-directed RNA polymerase beta' chain
366	 33.02	+1	422058..425525	-	1155	203287837	rpoB	BRE_387	-	DNA-directed RNA polymerase beta chain
367	 38.98	+2	425611..425982	-	123	203287838	rplL	BRE_388	-	50S ribosomal protein L7/L12
368	 29.24	0	426056..426544	-	162	203287839	rplJ	BRE_389	-	50S ribosomal protein L10
369	 30.81	0	426555..427229	-	224	203287840	rplA	BRE_390	-	50S ribosomal protein L1
370	 35.63	+2	427229..427663	-	144	203287841	rplK	BRE_391	-	50S ribosomal protein L11
371	 32.25	+1	427719..428273	-	184	203287842	nusG	BRE_392	-	transcription antitermination factor
372	 25.15	0	428284..428454	-	56	203287843	secE	BRE_393	-	preprotein translocase SecE subunit
373	 32.22	+1	428567..428746	-	59	203287844	rpmG	BRE_395	-	50S ribosomal protein L33
374	 26.41	0	428944..429795	-	283	203287845	-	BRE_397	-	hypothetical protein
375	 25.54	0	429806..430870	-	354	203287846	-	BRE_398	-	hypothetical protein
376	 23.38	-1	430853..432208	+	451	203287847	-	BRE_399	-	putative lipoprotein
377	 21.31	-1	432221..432877	+	218	203287848	-	BRE_400	-	hypothetical protein
27.65	MEAN

3.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.