IslandPath Analysis: Borrelia recurrentis A1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.65   STD DEV: 3.61
Borrelia recurrentis A1, complete genome - 1..930981
800 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
162	 24.31	0	187006..187914	-	302	203287633	-	BRE_172	-	hypothetical protein
163	 26.58	0	187911..188798	-	295	203287634	-	BRE_173	-	hypothetical protein
164	 34.44	+1	188806..189798	-	330	203287635	moxR	BRE_174	-	methanol dehydrogenase regulator
165	 27.01	0	189868..190500	-	210	203287636	gidB	BRE_175	-	glucose inhibited division protein B
166	 32.00	+1	190497..192377	-	626	203287637	gidA	BRE_176	-	glucose inhibited division protein A
167	 30.82	0	192362..193756	-	464	203287638	thdF	BRE_177	-	thiophene and furan oxidation protein
168	 24.65	0	193895..194389	+	164	203287639	-	BRE_178	-	putative flagellar protein
169	 29.19	0	194408..196291	+	627	203287640	flgK	BRE_179	-	flagellar hook-associated protein
170	 30.51	0	196295..197569	+	424	203287641	flgL	BRE_180	-	flagellar hook-associated protein 3
171	 25.45	0	197571..197963	+	130	203287642	-	BRE_181	-	hypothetical protein
172	 19.83	-2	197966..198202	+	78	203287643	csrA	BRE_182	-	carbon storage regulator
173	 26.52	0	198187..198876	-	229	203287644	-	BRE_183	-	hypothetical protein
174	 27.04	0	198830..199258	-	142	203287645	-	BRE_184	-	hypothetical protein
175	 28.67	0	199255..199554	-	99	203287646	-	BRE_185	-	hypothetical protein
176	 28.16	0	199720..200067	-	115	203287647	rplT	BRE_186	-	50S ribosomal protein L20
177	 28.28	0	200088..200285	-	65	203287648	rpmI	BRE_187	-	50S ribosomal protein L35
178	 32.62	+1	200308..200868	-	186	203287649	infC	BRE_188	-	translation initiation factor IF-3
179	 23.23	-1	201046..201708	+	220	203287650	-	BRE_189	-	hypothetical protein
180	 20.75	-1	201708..202454	+	248	203287651	-	BRE_190	-	hypothetical protein
181	 24.94	0	202547..203344	-	265	203287652	-	BRE_191	-	Tatd, Mg-dependent DNase
182	 28.61	0	203341..204483	-	380	203287653	-	BRE_192	-	hypothetical protein
183	 28.24	0	204782..205861	+	359	203287654	prfA	BRE_193	-	peptide chain release factor A
184	 25.54	0	205872..206705	+	277	203287655	-	BRE_194	-	HemK family methylase
185	 26.40	0	206689..208692	+	667	203287656	spoT	BRE_195	-	guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
186	 20.86	-1	208682..210925	+	747	203287657	-	BRE_196	-	hypothetical protein
187	 27.67	0	210922..212016	-	364	203287658	ddlA	BRE_197	-	D-alanine--D-alanine ligase
188	 29.80	0	212021..213547	-	508	203287659	murE	BRE_198	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
189	 26.09	0	213853..215094	+	413	203287660	-	BRE_200	-	hemolysin
190	 26.69	0	215219..216151	+	310	203287661	hflK	BRE_201	-	Lambda CII stability-governing protein
191	 27.98	0	216152..217123	+	323	203287662	hflC	BRE_202	-	Lambda CII stability-governing protein
192	 23.85	-1	217821..219359	+	512	203287663	-	BRE_204	-	hypothetical protein
193	 25.80	0	219364..219960	-	198	203287664	-	BRE_205	-	N6-adenine-specific methylase, putative
194	 26.71	0	219995..220825	+	276	203287665	gtaB	BRE_206	-	UTP--glucose-1-phosphate uridylyltransferase
195	 20.16	-2	220826..222541	+	571	203287666	-	BRE_207	-	hypothetical protein
196	 27.80	0	222591..224867	+	758	203287667	-	BRE_208	-	hypothetical protein
197	 24.89	0	224860..227205	+	781	203287668	lmp1	BRE_209	-	surface-located membrane protein 1
198	 25.82	0	227202..229037	+	611	203287669	mutL	BRE_210	-	DNA mismatch repair protein
199	 21.23	-1	229058..230098	+	346	203287670	-	BRE_211	-	hypothetical protein
200	 22.94	-1	230230..230883	-	217	203287671	-	BRE_213	-	putative lipoprotein
201	 30.22	0	230861..231439	-	192	203287672	efp	BRE_214	-	elongation factor EF-P
202	 28.24	0	231505..232407	+	300	203287673	pstS	BRE_215	-	phosphate ABC transporter, periplasmic phosphate-binding
203	 28.49	0	232495..233403	+	302	203287674	pstC	BRE_216	-	phosphate ABC transporter, permease protein
204	 27.16	0	233400..234938	+	512	203287675	pstA	BRE_217	-	phosphate ABC transporter, permease protein
205	 29.80	0	234942..235706	+	254	203287676	pstB	BRE_218	-	phosphate transport system ATP-binding protein
206	 34.79	+1	235708..236529	-	273	203287677	gufA	BRE_219	-	GufA protein
207	 30.69	0	236557..238335	-	592	203287678	alaS	BRE_220	-	alanyl-tRNA synthetase
208	 27.16	0	238335..239582	-	415	203287679	fliG-1	BRE_221	-	flagellar motor switch protein
209	 27.09	0	239557..240261	-	234	203287680	pgl	BRE_222	-	6-phosphogluconolactonase
210	 28.72	0	240278..240970	-	230	203287681	-	BRE_223	-	hypothetical protein
211	 28.47	0	241040..242047	+	335	203287682	-	BRE_224	-	tRNA-dihydrouridine synthase A
212	 31.84	+1	242037..243311	-	424	203287683	serS	BRE_225	-	seryl-tRNA synthetase
213	 24.49	0	243439..244173	+	244	203287684	-	BRE_226	-	putative lipoprotein
214	 25.83	0	244186..247104	+	972	203287685	-	BRE_227	-	Zn-dependent peptidase, insulinase-like protein
215	 27.64	0	247132..247377	-	81	203287686	rpmE	BRE_228	-	50S ribosomal protein L31
216	 29.97	0	247435..248979	-	514	203287687	rho	BRE_229	-	transcription termination factor
217	 26.72	0	249066..249473	-	135	203287688	-	BRE_230	-	hypothetical protein
218	 30.28	0	249477..249803	-	108	203287689	-	BRE_231	-	HbbU protein
219	 28.75	0	249815..250141	-	108	203287690	rpsT	BRE_232	-	30S ribosomal protein S20
220	 19.59	-2	250145..250966	-	273	203287691	-	BRE_233	-	hypothetical protein
221	 30.71	0	250977..252083	-	368	203287692	-	BRE_234	-	conserved hypothetical GTP-binding protein
222	 28.15	0	252108..254171	-	687	203287693	-	BRE_235	-	hypothetical protein
223	 26.45	0	254271..255824	+	517	203287694	-	BRE_236	-	apolipoprotein N-acyltransferase, putative
224	 27.80	0	255788..256564	-	258	203287695	-	BRE_237	-	hypothetical protein
225	 25.28	0	256624..257244	-	206	203287696	dck	BRE_238	-	deoxyguanosine/deoxyadenosine kinase(I) subunit 2
226	 33.20	+1	257950..258711	+	253	203287697	glpF	BRE_239	-	glycerol uptake facilitator
227	 31.49	+1	260390..261745	+	451	203287698	glpT	BRE_241	-	glycerol-3-phosphate transporter
228	 31.14	0	261831..262832	+	333	203287699	glpQ	BRE_242	-	glycerophosphoryl diester phosphodiesterase, periplasmic precursor (glycerophosphodiester phosphodiesterase); lipoprotein
229	 25.45	0	264527..265021	-	164	203287700	-	BRE_244	-	hypothetical protein
230	 30.80	0	265011..265562	-	183	203287701	-	BRE_245	-	hypothetical protein
231	 29.73	0	265563..266588	-	341	203287702	-	BRE_246	-	hypothetical protein
232	 22.83	-1	266793..267392	+	199	203287703	-	BRE_247	-	rdgB/HAM1 protein
233	 26.10	0	267518..269287	+	589	203287704	pepF	BRE_248	-	oligoendopeptidase F
234	 23.55	-1	269302..270006	+	234	203287705	-	BRE_249	-	Phosphatidylserine synthase
235	 24.72	0	270017..270631	+	204	203287706	dedA	BRE_250	-	DedA protein
236	 29.58	0	270831..273359	+	842	203287707	leuS	BRE_252	-	leucyl-tRNA synthetase
237	 26.59	0	273370..275637	+	755	203287708	-	BRE_253	-	hypothetical protein
238	 30.27	0	275700..278150	-	816	203287709	lon-1	BRE_254	-	ATP-dependent protease LA
239	 22.42	-1	278219..278905	+	228	203287710	-	BRE_255	-	hypothetical protein
240	 23.94	-1	278886..281045	+	719	203287711	recJ1	BRE_256	-	single-stranded-DNA-specific exonuclease
241	 27.06	0	281045..282001	+	318	203287712	-	BRE_257	-	hypothetical protein
242	 27.14	0	282020..282229	+	69	203287713	rpsU_1	BRE_258	-	30S ribosomal protein S21
243	 28.91	0	282279..284630	-	783	203287714	ftsK1	BRE_259	-	FtsK/SpoIIIE family protein
244	 27.06	0	287819..288775	+	318	203287715	-	BRE_262	-	hypothetical protein
245	 27.14	0	288794..289003	+	69	203287716	rpsU_2	BRE_263	-	30S ribosomal protein S21
246	 29.12	0	289053..291404	-	783	203287717	ftsK2	BRE_264	-	DNA segregation ATPase FtsK/SpoIIIE
247	 23.47	-1	291417..292217	-	266	203287718	bacA	BRE_265	-	undecaprenyl-diphosphatase
248	 25.48	0	292231..294381	-	716	203287719	-	BRE_266	-	hypothetical protein
249	 26.20	0	294362..295567	-	401	203287720	-	BRE_267	-	hypothetical protein
250	 26.85	0	295727..297130	+	467	203287721	-	BRE_268	-	hypothetical protein
251	 27.11	0	297132..298400	-	422	203287722	-	BRE_269	-	hypothetical protein
252	 24.40	0	298470..298973	+	167	203287723	lepB-3	BRE_270	-	signal peptidase I
253	 29.03	0	299006..300514	-	502	203287724	dnaK-1	BRE_271	-	heat shock protein 70
254	 22.29	-1	300511..301008	-	165	203287725	-	BRE_272	-	hypothetical protein
255	 26.28	0	301029..301340	-	103	203287726	-	BRE_273	-	hypothetical protein
256	 31.70	+1	301364..303262	-	632	203287727	-	BRE_274	-	hypothetical protein
257	 25.15	0	303265..303753	-	162	203287728	-	BRE_275	-	hypothetical protein
258	 29.74	0	303760..304650	-	296	203287729	ylxH-1	BRE_276	-	ATP-binding protein
259	 27.92	0	304660..305841	-	393	203287730	flhF	BRE_277	-	flagellar-associated GTP-binding protein
260	 31.32	+1	305831..307918	-	695	203287731	flhA	BRE_278	-	flagellar biosynthesis protein
261	 29.41	0	307931..309052	-	373	203287732	flhB	BRE_279	-	flagellar biosynthesis protein
27.65	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.