IslandPathversion 1.0

IslandPath Analysis: Borrelia recurrentis A1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 27.65 STD DEV: 3.61
Borrelia recurrentis A1, complete genome - 1..930981
800 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
114	 28.86	0	130194..130886	-	230	203287585	uppS	BRE_122	-	undecaprenyl diphosphate synthase
115	 31.17	0	130891..131445	-	184	203287586	frr	BRE_123	-	ribosome releasing factor
116	 30.59	0	131483..132319	-	278	203287587	tsf	BRE_124	-	translation elongation factor EF-TS
117	 30.33	0	132341..133105	-	254	203287588	rpsB	BRE_125	-	30S ribosomal protein S2
118	 25.83	0	133141..133740	-	199	203287589	maf	BRE_126	-	maf protein
119	 19.00	-2	133730..134008	-	92	203287590	-	BRE_127	-	hypothetical protein
120	 27.70	0	134022..134696	-	224	203287591	-	BRE_128	-	hypothetical protein
121	 24.54	0	134816..135418	-	200	203287592	-	BRE_129	-	hypothetical protein
122	 30.04	0	135411..137078	-	555	203287593	rpsA	BRE_130	-	30S ribosomal protein S1
123	 26.64	0	137086..137742	-	218	203287594	cmk	BRE_131	-	cytidylate kinase
124	 28.92	0	137739..138485	-	248	203287595	-	BRE_132	-	pseudouridylate synthase
125	 23.00	-1	138457..139230	-	257	203287596	-	BRE_133	-	hypothetical protein
126	 26.71	0	140341..143043	-	900	203287597	greA	BRE_135	-	transcription elongation factor EF
127	 28.47	0	143079..144023	-	314	203287598	-	BRE_136	-	hypothetical protein
128	 22.08	-1	144210..145355	+	381	203287599	-	BRE_137	-	hypothetical protein
129	 28.15	0	145395..146765	-	456	203287600	hisS	BRE_138	-	histidyl-tRNA synthetase
130	 26.37	0	146905..148785	+	626	203287601	pbp-1	BRE_139	-	penicillin-binding protein
131	 28.20	0	148787..150676	-	629	203287602	-	BRE_140	-	long-chain-fatty-acid CoA ligase
132	 25.17	0	150892..151185	-	97	203287603	-	BRE_141	-	hypothetical protein
133	 28.61	0	151198..154437	-	1079	203287604	acrB	BRE_142	-	acriflavine resistance protein
134	 32.34	+1	154441..155247	-	268	203287605	mtrC	BRE_143	-	membrane fusion protein
135	 25.29	0	155427..156794	-	455	203287606	-	BRE_144	-	hypothetical protein
136	 22.11	-1	156784..157086	+	100	203287607	hlyA	BRE_145	-	alpha-hemolysin
137	 31.88	+1	157075..157971	-	298	203287608	proX	BRE_146	-	glycine betaine/L-proline transport system substrate-binding protein; lipoprotein
138	 29.00	0	158008..158907	-	299	203287609	proW	BRE_147	-	glycine betaine/L-proline transport system permease protein
139	 27.61	0	158914..160032	-	372	203287610	proV	BRE_148	-	glycine betaine/L-proline transport system ATP-binding protein
140	 37.00	+2	160157..161164	-	335	203287611	flaB	BRE_149	-	flagellar filament 41 kDa core protein
141	 28.74	0	161292..163292	-	666	203287612	fliD	BRE_150	-	flagellar hook-associated protein 2
142	 31.34	+1	163467..164672	+	401	203287613	nagA	BRE_151	-	N-acetylglucosamine-6-phosphate deacetylase
143	 29.87	0	164672..165508	+	278	203287614	nagB	BRE_152	-	glucosamine-6-phosphate isomerase
144	 28.10	0	165664..166275	-	203	203287615	sodA	BRE_153	-	superoxide dismutase
145	 31.52	+1	166291..168999	-	902	203287616	secA	BRE_154	-	preprotein translocase SecA subunit
146	 24.96	0	169051..170184	+	377	203287617	-	BRE_155	-	putative lipoprotein
147	 20.19	-2	170206..170631	+	141	203287618	-	BRE_156	-	hypothetical protein
148	 25.18	0	170635..171051	+	138	203287619	-	BRE_157	-	hypothetical protein
149	 24.26	0	171145..172257	+	370	203287620	alr	BRE_158	-	alanine racemase
150	 23.72	-1	172249..173934	-	561	203287621	-	BRE_159	-	hypothetical protein
151	 29.17	0	173918..174085	+	55	203287622	-	BRE_160	-	hypothetical protein
152	 25.48	0	174090..175847	-	585	203287623	-	BRE_161	-	hypothetical protein
153	 22.90	-1	175923..176900	-	325	203287624	-	BRE_162	-	Na+/Ca+ exchange protein
154	 26.53	0	176925..178790	-	621	203287625	-	BRE_163	-	hypothetical protein
155	 25.13	0	180493..181650	+	385	203287626	tpn50	BRE_165	-	outer membrane protein
156	 26.30	0	181654..182037	-	127	203287627	-	BRE_166	-	DnaK suppressor
157	 29.28	0	182206..182427	+	73	203287628	infA	BRE_167	-	translation initiation factor IF-1
158	 24.67	0	182472..184514	-	680	203287629	-	BRE_168	-	hypothetical protein
159	 28.57	0	184463..185050	-	195	203287630	-	BRE_169	-	hypothetical protein
160	 25.96	0	185032..186021	-	329	203287631	-	BRE_170	-	hypothetical protein
161	 26.90	0	186018..187043	-	341	203287632	-	BRE_171	-	hypothetical protein
162	 24.31	0	187006..187914	-	302	203287633	-	BRE_172	-	hypothetical protein
163	 26.58	0	187911..188798	-	295	203287634	-	BRE_173	-	hypothetical protein
164	 34.44	+1	188806..189798	-	330	203287635	moxR	BRE_174	-	methanol dehydrogenase regulator
165	 27.01	0	189868..190500	-	210	203287636	gidB	BRE_175	-	glucose inhibited division protein B
166	 32.00	+1	190497..192377	-	626	203287637	gidA	BRE_176	-	glucose inhibited division protein A
167	 30.82	0	192362..193756	-	464	203287638	thdF	BRE_177	-	thiophene and furan oxidation protein
168	 24.65	0	193895..194389	+	164	203287639	-	BRE_178	-	putative flagellar protein
169	 29.19	0	194408..196291	+	627	203287640	flgK	BRE_179	-	flagellar hook-associated protein
170	 30.51	0	196295..197569	+	424	203287641	flgL	BRE_180	-	flagellar hook-associated protein 3
171	 25.45	0	197571..197963	+	130	203287642	-	BRE_181	-	hypothetical protein
172	 19.83	-2	197966..198202	+	78	203287643	csrA	BRE_182	-	carbon storage regulator
173	 26.52	0	198187..198876	-	229	203287644	-	BRE_183	-	hypothetical protein
174	 27.04	0	198830..199258	-	142	203287645	-	BRE_184	-	hypothetical protein
175	 28.67	0	199255..199554	-	99	203287646	-	BRE_185	-	hypothetical protein
176	 28.16	0	199720..200067	-	115	203287647	rplT	BRE_186	-	50S ribosomal protein L20
177	 28.28	0	200088..200285	-	65	203287648	rpmI	BRE_187	-	50S ribosomal protein L35
178	 32.62	+1	200308..200868	-	186	203287649	infC	BRE_188	-	translation initiation factor IF-3
179	 23.23	-1	201046..201708	+	220	203287650	-	BRE_189	-	hypothetical protein
180	 20.75	-1	201708..202454	+	248	203287651	-	BRE_190	-	hypothetical protein
181	 24.94	0	202547..203344	-	265	203287652	-	BRE_191	-	Tatd, Mg-dependent DNase
182	 28.61	0	203341..204483	-	380	203287653	-	BRE_192	-	hypothetical protein
183	 28.24	0	204782..205861	+	359	203287654	prfA	BRE_193	-	peptide chain release factor A
184	 25.54	0	205872..206705	+	277	203287655	-	BRE_194	-	HemK family methylase
185	 26.40	0	206689..208692	+	667	203287656	spoT	BRE_195	-	guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
186	 20.86	-1	208682..210925	+	747	203287657	-	BRE_196	-	hypothetical protein
187	 27.67	0	210922..212016	-	364	203287658	ddlA	BRE_197	-	D-alanine--D-alanine ligase
188	 29.80	0	212021..213547	-	508	203287659	murE	BRE_198	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
189	 26.09	0	213853..215094	+	413	203287660	-	BRE_200	-	hemolysin
190	 26.69	0	215219..216151	+	310	203287661	hflK	BRE_201	-	Lambda CII stability-governing protein
191	 27.98	0	216152..217123	+	323	203287662	hflC	BRE_202	-	Lambda CII stability-governing protein
192	 23.85	-1	217821..219359	+	512	203287663	-	BRE_204	-	hypothetical protein
193	 25.80	0	219364..219960	-	198	203287664	-	BRE_205	-	N6-adenine-specific methylase, putative
194	 26.71	0	219995..220825	+	276	203287665	gtaB	BRE_206	-	UTP--glucose-1-phosphate uridylyltransferase
195	 20.16	-2	220826..222541	+	571	203287666	-	BRE_207	-	hypothetical protein
196	 27.80	0	222591..224867	+	758	203287667	-	BRE_208	-	hypothetical protein
197	 24.89	0	224860..227205	+	781	203287668	lmp1	BRE_209	-	surface-located membrane protein 1
198	 25.82	0	227202..229037	+	611	203287669	mutL	BRE_210	-	DNA mismatch repair protein
199	 21.23	-1	229058..230098	+	346	203287670	-	BRE_211	-	hypothetical protein
200	 22.94	-1	230230..230883	-	217	203287671	-	BRE_213	-	putative lipoprotein
201	 30.22	0	230861..231439	-	192	203287672	efp	BRE_214	-	elongation factor EF-P
202	 28.24	0	231505..232407	+	300	203287673	pstS	BRE_215	-	phosphate ABC transporter, periplasmic phosphate-binding
203	 28.49	0	232495..233403	+	302	203287674	pstC	BRE_216	-	phosphate ABC transporter, permease protein
204	 27.16	0	233400..234938	+	512	203287675	pstA	BRE_217	-	phosphate ABC transporter, permease protein
205	 29.80	0	234942..235706	+	254	203287676	pstB	BRE_218	-	phosphate transport system ATP-binding protein
206	 34.79	+1	235708..236529	-	273	203287677	gufA	BRE_219	-	GufA protein
207	 30.69	0	236557..238335	-	592	203287678	alaS	BRE_220	-	alanyl-tRNA synthetase
208	 27.16	0	238335..239582	-	415	203287679	fliG-1	BRE_221	-	flagellar motor switch protein
209	 27.09	0	239557..240261	-	234	203287680	pgl	BRE_222	-	6-phosphogluconolactonase
210	 28.72	0	240278..240970	-	230	203287681	-	BRE_223	-	hypothetical protein
211	 28.47	0	241040..242047	+	335	203287682	-	BRE_224	-	tRNA-dihydrouridine synthase A
212	 31.84	+1	242037..243311	-	424	203287683	serS	BRE_225	-	seryl-tRNA synthetase
213	 24.49	0	243439..244173	+	244	203287684	-	BRE_226	-	putative lipoprotein
27.65	MEAN

3.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.