IslandPath Analysis: Borrelia burgdorferi B31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.42   STD DEV: 3.85
Borrelia burgdorferi B31, complete genome - 1..910724
851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
652	 32.94	+1	690885..692645	+	586	15594997	secD	BB0652	-	preprotein translocase subunit SecD
653	 25.22	0	692629..693528	+	299	15594998	secF	BB0653	-	preprotein translocase subunit SecF
654	 23.97	-1	693554..694696	+	380	15594999	-	BB0654	-	hypothetical protein
655	 27.80	0	694693..695523	-	276	15595000	-	BB0655	-	heat shock protein (dnaJ-2)
656	 28.22	0	695631..696764	+	377	15595001	-	BB0656	-	oxygen-independent coproporphyrinogen III oxidase, putative
657	 29.40	0	696751..697437	-	228	15595002	-	BB0657	-	ribose 5-phosphate isomerase (rpi)
658	 34.38	+1	697571..698332	+	253	15595003	-	BB0658	-	phosphoglycerate mutase (gpmA)
659	 31.67	0	698400..699965	-	521	15595004	lysK	BB0659	-	lysyl-tRNA synthetase
660	 26.35	0	700052..700924	-	290	15595005	era	BB0660	-	GTP-binding protein Era
661	 33.87	+1	701014..701385	+	123	15595006	-	BB0661	-	hypothetical protein
662	 25.06	0	701395..701805	+	136	15595007	-	BB0662	-	hypothetical protein
663	 29.11	0	701825..702274	+	149	15595008	-	BB0663	-	hypothetical protein
664	 26.17	0	702283..702966	-	227	15595009	-	BB0664	-	hypothetical protein
665	 27.81	0	703009..703968	+	319	15595010	-	BB0665	-	hypothetical protein
666	 27.11	0	703931..704959	+	342	15595011	-	BB0666	-	hypothetical protein
667	 23.91	-1	704949..705500	+	183	15595012	-	BB0667	-	hypothetical protein
668	 33.53	+1	705571..706605	+	344	15595013	-	BB0668	-	flagellar filament outer layer protein (flaA)
669	 28.90	0	706673..709267	+	864	15595014	-	BB0669	-	chemotaxis histidine kinase (cheA-2)
670	 27.34	0	709274..710674	+	466	15595015	-	BB0670	-	purine-binding chemotaxis protein (cheW-3)
671	 34.16	+1	710686..711171	+	161	15595016	-	BB0671	-	chemotaxis operon protein (cheX)
672	 31.07	0	711211..711651	+	146	15595017	-	BB0672	-	chemotaxis response regulator (cheY-3)
673	 21.51	-1	711692..712207	-	171	15595018	-	BB0673	-	hypothetical protein
674	 23.50	-1	712204..713250	-	348	15595019	-	BB0674	-	hypothetical protein
675	 26.16	0	713244..714107	-	287	15595020	-	BB0675	-	hypothetical protein
676	 30.47	0	714104..714766	-	220	15595021	-	BB0676	-	phosphoglycolate phosphatase (gph)
677	 30.11	0	715009..716619	+	536	15595022	-	BB0677	-	ribose/galactose ABC transporter, ATP-binding protein (mglA)
678	 28.30	0	716620..717771	+	383	15595023	-	BB0678	-	ribose/galactose ABC transporter, permease protein (rbsC-1)
679	 31.73	0	717734..718669	+	311	15595024	-	BB0679	-	ribose/galactose ABC transporter, permease protein (rbsC-2)
680	 32.67	+1	718827..721088	+	753	15595025	-	BB0680	-	methyl-accepting chemotaxis protein (mcp-4)
681	 32.13	0	721110..723020	+	636	15595026	-	BB0681	-	methyl-accepting chemotaxis protein (mcp-5)
682	 28.93	0	723063..724130	-	355	15595027	trmU	BB0682	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
683	 31.21	0	724224..725447	+	407	15595028	-	BB0683	-	3-hydroxy-3-methylglutaryl-CoA synthase
684	 32.13	0	725413..726495	+	360	15595029	-	BB0684	-	isopentenyl pyrophosphate isomerase
685	 29.24	0	726458..727753	+	431	15595030	-	BB0685	-	3-hydroxy-3-methylglutaryl-CoA reductase (mvaA)
686	 29.50	0	727737..728675	+	312	15595031	-	BB0686	-	mevalonate pyrophosphate decarboxylase
687	 32.39	+1	728666..729619	+	317	15595032	-	BB0687	-	phosphomevalonate kinase, putative
688	 29.31	0	729613..730506	+	297	15595033	-	BB0688	-	mevalonate kinase
689	 28.42	0	730632..731099	-	155	15595034	-	BB0689	-	hypothetical protein
690	 27.54	0	731151..731720	+	189	15595035	-	BB0690	-	neutrophil activating protein (napA)
691	 30.65	0	731794..733803	+	669	15595036	-	BB0691	-	elongation factor G
692	 21.05	-1	733809..733922	+	37	15595037	-	BB0692	-	hypothetical protein
693	 29.03	0	734081..735289	+	402	15595038	-	BB0693	-	xylose operon regulatory protein (xylR-1)
694	 31.55	0	735343..736686	+	447	15595039	-	BB0694	-	signal recognition particle protein (ffh)
695	 31.80	0	736699..736959	+	86	15595040	rpsP	BB0695	-	30S ribosomal protein S16
696	 36.55	+2	736960..737208	+	82	15595041	-	BB0696	-	hypothetical protein
697	 28.74	0	737212..737712	+	166	15595042	-	BB0697	-	hypothetical protein
698	 31.81	0	737709..738428	+	239	15595043	trmD	BB0698	-	tRNA (guanine-N(1)-)-methyltransferase
699	 31.97	0	738406..738771	+	121	15595044	rplS	BB0699	-	50S ribosomal protein L19
700	 24.56	-1	738851..738964	+	37	15595045	-	BB0700	-	hypothetical protein
701	 25.00	0	739144..739683	+	179	15595046	-	BB0701	-	hypothetical protein
702	 26.63	0	739685..740176	+	163	15595047	-	BB0702	-	lipopolysaccharide biosynthesis-related protein (kdtB)
703	 31.15	0	740240..740422	+	60	15595048	rpmF	BB0703	-	50S ribosomal protein L32
704	 32.10	0	740446..740688	+	80	15595049	-	BB0704	-	acyl carrier protein
705	 31.04	0	740685..741425	+	246	15595050	-	BB0705	-	ribonuclease III (rnc)
706	 22.38	-1	741396..742628	-	410	15595051	-	BB0706	-	polynucleotide adenylyltransferase (papS)
707	 26.05	0	742690..744516	+	608	15595052	-	BB0707	-	hypothetical protein
708	 19.44	-2	744522..744845	+	107	15595053	-	BB0708	-	hypothetical protein
709	 27.81	0	745302..746333	+	343	15595054	-	BB0709	-	hypothetical protein
710	 27.23	0	746339..747910	+	523	15595055	-	BB0710	-	DNA primase (dnaG)
711	 30.26	0	747925..748119	+	64	15595056	-	BB0711	-	hypothetical protein
712	 31.91	0	748123..750018	+	631	15595057	-	BB0712	-	RNA polymerase sigma factor RpoD
713	 29.66	0	750028..750789	+	253	15595058	-	BB0713	-	hypothetical protein
714	 25.39	0	751191..752159	+	322	15595059	-	BB0714	-	hypothetical protein
715	 35.64	+1	752134..753219	+	361	15595060	-	BB0715	-	rod shape-determining protein (mreB-1)
716	 28.37	0	753223..754068	+	281	15595061	-	BB0716	-	rod shape-determining protein (mreC)
717	 20.29	-2	754068..754550	+	160	15595062	-	BB0717	-	hypothetical protein
718	 31.56	0	754550..756349	+	599	15595063	-	BB0718	-	penicillin-binding protein (pbp-2)
719	 27.46	0	756291..757670	+	459	15595064	-	BB0719	-	rod shape-determining protein (mreB-2)
720	 31.84	0	757836..759581	+	581	15595065	-	BB0720	-	threonyl-tRNA synthetase (thrZ)
721	 22.22	-1	759586..760215	+	209	15595066	-	BB0721	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
722	 24.83	0	760202..761647	+	481	15595067	-	BB0722	-	hypothetical protein
723	 20.22	-2	761621..762154	-	177	15595068	-	BB0723	-	hypothetical protein
724	 30.41	0	762242..763573	+	443	15595069	-	BB0724	-	K+ transport protein (ntpJ)
725	 27.65	0	763570..764361	+	263	15595070	-	BB0725	-	hypothetical protein
726	 29.94	0	764371..765342	+	323	15595071	-	BB0726	-	ATP-binding protein (ylxH-3)
727	 34.00	+1	765370..766716	+	448	15595072	-	BB0727	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
728	 31.61	0	766733..768067	-	444	15595073	-	BB0728	-	coenzyme A disulfide reductase
729	 32.69	+1	768079..769470	-	463	15595074	-	BB0729	-	glutamate transporter (gltP)
730	 29.02	0	769547..771145	-	532	15595075	pgi	BB0730	-	glucose-6-phosphate isomerase
731	 22.39	-1	771162..771563	-	133	15595076	-	BB0731	-	hypothetical protein
732	 31.62	0	771570..774368	-	932	15595077	-	BB0732	-	penicillin-binding protein (pbp-3)
733	 29.72	0	774632..775462	+	276	15595078	-	BB0733	-	hypothetical protein
734	 29.68	0	775666..776679	-	337	15595079	-	BB0734	-	hypothetical protein
735	 31.04	0	776746..777573	+	275	15595080	-	BB0735	-	rare lipoprotein A (rlpA)
736	 20.83	-1	777625..777768	+	47	15595081	-	BB0736	-	hypothetical protein
737	 28.27	0	777747..778754	+	335	15595082	-	BB0737	-	histidine phosphokinase/phophatase, putative
738	 30.21	0	778758..781385	+	875	15595083	valS	BB0738	-	valyl-tRNA synthetase
739	 25.68	0	781486..782073	-	195	15595084	-	BB0739	-	hypothetical protein
740	 24.04	-1	782152..782829	-	225	15595085	-	BB0740	-	hypothetical protein
741	 30.50	0	782976..783257	-	93	15595086	groES	BB0741	-	co-chaperonin GroES
742	 30.92	0	783324..785021	+	565	15595087	-	BB0742	-	ABC transporter, ATP-binding protein
743	 28.15	0	785057..786754	+	565	15595088	-	BB0743	-	hypothetical protein
744	 29.86	0	786860..788962	+	700	15595089	-	BB0744	-	antigen, p83/100
745	 25.26	0	789270..789938	+	222	15595090	-	BB0745	-	endonuclease III (nth)
746	 26.95	0	789947..790807	-	286	15595091	-	BB0746	-	oligopeptide ABC transporter, permease protein (oppC-2)
747	 25.38	0	790807..791787	-	326	15595092	-	BB0747	-	oligopeptide ABC transporter, permease protein (oppB-2)
748	 26.14	0	791794..792252	-	152	15595093	-	BB0748	-	hypothetical protein
749	 29.85	0	792333..793625	+	430	15595094	-	BB0749	-	hypothetical protein
750	 17.36	-2	793693..793836	+	47	15595095	-	BB0750	-	hypothetical protein
751	 25.42	0	793842..794915	-	357	15595096	-	BB0751	-	hypothetical protein
28.42	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.