IslandPath Analysis: Borrelia burgdorferi B31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.42   STD DEV: 3.85
Borrelia burgdorferi B31, complete genome - 1..910724
851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
612	 32.79	+1	638580..639872	+	430	15594957	clpX	BB0612	-	ATP-dependent protease ATP-binding subunit
613	 30.59	0	639808..642249	+	813	15594958	-	BB0613	-	ATP-dependent protease LA (lon-2)
614	 34.64	+1	642289..642441	+	50	15594959	-	BB0614	-	hypothetical protein
615	 33.02	+1	642500..643129	-	209	15594960	rpsD	BB0615	-	30S ribosomal protein S4
616	 26.92	0	643295..644650	-	451	15594961	-	BB0616	-	hypothetical protein
617	 20.87	-1	644772..645140	+	122	15594962	-	BB0617	-	hypothetical protein
618	 27.74	0	645137..645601	-	154	15594963	-	BB0618	-	cytidine deaminase (cdd)
619	 30.01	0	645689..646681	+	330	15594964	-	BB0619	-	hypothetical protein
620	 26.26	0	646659..648326	-	555	15594965	-	BB0620	-	beta-glucosidase, putative
621	 31.89	0	648553..649107	+	184	15594966	-	BB0621	-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein (thiJ)
622	 28.99	0	649170..650411	-	413	15594967	-	BB0622	-	acetate kinase (ackA)
623	 26.91	0	650413..653790	-	1125	15594968	-	BB0623	-	transcription-repair coupling factor (mfd)
624	 26.58	0	653887..654849	+	320	15594969	-	BB0624	-	hypothetical protein
625	 29.37	0	654809..656902	+	697	15594970	-	BB0625	-	N-acetylmuramoyl-L-alanine amidase, putative
626	 26.56	0	656998..657543	-	181	15594971	-	BB0626	-	hypothetical protein
627	 30.27	0	657546..658817	-	423	15594972	-	BB0627	-	putative aminopeptidase 2
628	 27.69	0	658898..659623	+	241	15594973	-	BB0628	-	hypothetical protein
629	 32.96	+1	659644..661524	-	626	15594974	-	BB0629	-	PTS system, fructose-specific IIABC component (fruA-2)
630	 31.39	0	661606..662529	+	307	15594975	-	BB0630	-	1-phosphofructokinase (fruK)
631	 30.48	0	662603..662917	-	104	15594976	-	BB0631	-	hypothetical protein
632	 24.28	-1	663179..665011	-	610	15594977	-	BB0632	-	exodeoxyribonuclease V, alpha chain (recD)
633	 23.70	-1	665008..668517	-	1169	15594978	-	BB0633	-	exodeoxyribonuclease V, beta chain (recB)
634	 23.05	-1	668848..671763	-	971	15594979	-	BB0634	-	exodeoxyribonuclease V, gamma chain (recC)
635	 28.84	0	671767..673212	-	481	15594980	-	BB0635	-	nicotinate phosphoribosyltransferase
636	 28.67	0	673342..674778	+	478	15594981	-	BB0636	-	glucose-6-phosphate 1-dehydrogenase
637	 29.85	0	675029..676378	+	449	15594982	-	BB0637	-	Na+/H+ antiporter (nhaC-1)
638	 30.96	0	676472..677860	+	462	15594983	-	BB0638	-	Na+/H+ antiporter (nhaC-2)
639	 26.93	0	677892..678938	-	348	15594984	-	BB0639	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding periplasmic protein (potD)
640	 27.40	0	678959..679750	-	263	15594985	-	BB0640	-	spermidine/putrescine ABC transporter, permease protein (potC)
641	 28.15	0	679754..680563	-	269	15594986	-	BB0641	-	spermidine/putrescine ABC transporter, permease protein (potB)
642	 31.99	0	680563..681606	-	347	15594987	-	BB0642	-	spermidine/putrescine ABC transporter, ATP-binding protein (potA)
643	 24.88	0	681685..682524	-	279	15594988	rbgA	BB0643	-	ribosomal biogenesis GTPase
644	 31.33	0	682679..683377	+	232	15594989	-	BB0644	-	N-acetylmannosamine-6-phosphate 2-epimerase
645	 35.28	+1	683423..684967	+	514	15594990	-	BB0645	-	PTS system, glucose-specific IIBC component (ptsG)
646	 30.39	0	684997..685980	-	327	15594991	-	BB0646	-	hypothetical protein
647	 29.76	0	685977..686507	-	176	15594992	-	BB0647	-	ferric uptake regulation protein (fur)
648	 23.45	-1	686607..688295	-	562	15594993	-	BB0648	-	serine/threonine kinase, putative
649	 36.39	+2	688490..690127	+	545	15594994	groEL	BB0649	-	chaperonin GroEL
650	 28.32	0	690151..690489	+	112	15594995	-	BB0650	-	hypothetical protein
651	 28.93	0	690482..690799	+	105	15594996	-	BB0651	-	hypothetical protein
652	 32.94	+1	690885..692645	+	586	15594997	secD	BB0652	-	preprotein translocase subunit SecD
653	 25.22	0	692629..693528	+	299	15594998	secF	BB0653	-	preprotein translocase subunit SecF
654	 23.97	-1	693554..694696	+	380	15594999	-	BB0654	-	hypothetical protein
655	 27.80	0	694693..695523	-	276	15595000	-	BB0655	-	heat shock protein (dnaJ-2)
656	 28.22	0	695631..696764	+	377	15595001	-	BB0656	-	oxygen-independent coproporphyrinogen III oxidase, putative
657	 29.40	0	696751..697437	-	228	15595002	-	BB0657	-	ribose 5-phosphate isomerase (rpi)
658	 34.38	+1	697571..698332	+	253	15595003	-	BB0658	-	phosphoglycerate mutase (gpmA)
659	 31.67	0	698400..699965	-	521	15595004	lysK	BB0659	-	lysyl-tRNA synthetase
660	 26.35	0	700052..700924	-	290	15595005	era	BB0660	-	GTP-binding protein Era
661	 33.87	+1	701014..701385	+	123	15595006	-	BB0661	-	hypothetical protein
662	 25.06	0	701395..701805	+	136	15595007	-	BB0662	-	hypothetical protein
663	 29.11	0	701825..702274	+	149	15595008	-	BB0663	-	hypothetical protein
664	 26.17	0	702283..702966	-	227	15595009	-	BB0664	-	hypothetical protein
665	 27.81	0	703009..703968	+	319	15595010	-	BB0665	-	hypothetical protein
666	 27.11	0	703931..704959	+	342	15595011	-	BB0666	-	hypothetical protein
667	 23.91	-1	704949..705500	+	183	15595012	-	BB0667	-	hypothetical protein
668	 33.53	+1	705571..706605	+	344	15595013	-	BB0668	-	flagellar filament outer layer protein (flaA)
669	 28.90	0	706673..709267	+	864	15595014	-	BB0669	-	chemotaxis histidine kinase (cheA-2)
670	 27.34	0	709274..710674	+	466	15595015	-	BB0670	-	purine-binding chemotaxis protein (cheW-3)
671	 34.16	+1	710686..711171	+	161	15595016	-	BB0671	-	chemotaxis operon protein (cheX)
672	 31.07	0	711211..711651	+	146	15595017	-	BB0672	-	chemotaxis response regulator (cheY-3)
673	 21.51	-1	711692..712207	-	171	15595018	-	BB0673	-	hypothetical protein
674	 23.50	-1	712204..713250	-	348	15595019	-	BB0674	-	hypothetical protein
675	 26.16	0	713244..714107	-	287	15595020	-	BB0675	-	hypothetical protein
676	 30.47	0	714104..714766	-	220	15595021	-	BB0676	-	phosphoglycolate phosphatase (gph)
677	 30.11	0	715009..716619	+	536	15595022	-	BB0677	-	ribose/galactose ABC transporter, ATP-binding protein (mglA)
678	 28.30	0	716620..717771	+	383	15595023	-	BB0678	-	ribose/galactose ABC transporter, permease protein (rbsC-1)
679	 31.73	0	717734..718669	+	311	15595024	-	BB0679	-	ribose/galactose ABC transporter, permease protein (rbsC-2)
680	 32.67	+1	718827..721088	+	753	15595025	-	BB0680	-	methyl-accepting chemotaxis protein (mcp-4)
681	 32.13	0	721110..723020	+	636	15595026	-	BB0681	-	methyl-accepting chemotaxis protein (mcp-5)
682	 28.93	0	723063..724130	-	355	15595027	trmU	BB0682	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
683	 31.21	0	724224..725447	+	407	15595028	-	BB0683	-	3-hydroxy-3-methylglutaryl-CoA synthase
684	 32.13	0	725413..726495	+	360	15595029	-	BB0684	-	isopentenyl pyrophosphate isomerase
685	 29.24	0	726458..727753	+	431	15595030	-	BB0685	-	3-hydroxy-3-methylglutaryl-CoA reductase (mvaA)
686	 29.50	0	727737..728675	+	312	15595031	-	BB0686	-	mevalonate pyrophosphate decarboxylase
687	 32.39	+1	728666..729619	+	317	15595032	-	BB0687	-	phosphomevalonate kinase, putative
688	 29.31	0	729613..730506	+	297	15595033	-	BB0688	-	mevalonate kinase
689	 28.42	0	730632..731099	-	155	15595034	-	BB0689	-	hypothetical protein
690	 27.54	0	731151..731720	+	189	15595035	-	BB0690	-	neutrophil activating protein (napA)
691	 30.65	0	731794..733803	+	669	15595036	-	BB0691	-	elongation factor G
692	 21.05	-1	733809..733922	+	37	15595037	-	BB0692	-	hypothetical protein
693	 29.03	0	734081..735289	+	402	15595038	-	BB0693	-	xylose operon regulatory protein (xylR-1)
694	 31.55	0	735343..736686	+	447	15595039	-	BB0694	-	signal recognition particle protein (ffh)
695	 31.80	0	736699..736959	+	86	15595040	rpsP	BB0695	-	30S ribosomal protein S16
696	 36.55	+2	736960..737208	+	82	15595041	-	BB0696	-	hypothetical protein
697	 28.74	0	737212..737712	+	166	15595042	-	BB0697	-	hypothetical protein
698	 31.81	0	737709..738428	+	239	15595043	trmD	BB0698	-	tRNA (guanine-N(1)-)-methyltransferase
699	 31.97	0	738406..738771	+	121	15595044	rplS	BB0699	-	50S ribosomal protein L19
700	 24.56	-1	738851..738964	+	37	15595045	-	BB0700	-	hypothetical protein
701	 25.00	0	739144..739683	+	179	15595046	-	BB0701	-	hypothetical protein
702	 26.63	0	739685..740176	+	163	15595047	-	BB0702	-	lipopolysaccharide biosynthesis-related protein (kdtB)
703	 31.15	0	740240..740422	+	60	15595048	rpmF	BB0703	-	50S ribosomal protein L32
704	 32.10	0	740446..740688	+	80	15595049	-	BB0704	-	acyl carrier protein
705	 31.04	0	740685..741425	+	246	15595050	-	BB0705	-	ribonuclease III (rnc)
706	 22.38	-1	741396..742628	-	410	15595051	-	BB0706	-	polynucleotide adenylyltransferase (papS)
707	 26.05	0	742690..744516	+	608	15595052	-	BB0707	-	hypothetical protein
708	 19.44	-2	744522..744845	+	107	15595053	-	BB0708	-	hypothetical protein
709	 27.81	0	745302..746333	+	343	15595054	-	BB0709	-	hypothetical protein
710	 27.23	0	746339..747910	+	523	15595055	-	BB0710	-	DNA primase (dnaG)
711	 30.26	0	747925..748119	+	64	15595056	-	BB0711	-	hypothetical protein
28.42	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.